mRNA_H-elongata_contig52692.12582.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 154 bits (389), Expect = 7.060e-42 Identity = 92/234 (39.32%), Postives = 129/234 (55.13%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPEGLQ--IGVIRMDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGAVGYLRRSKPEHKLAPHGASCIILG 672
C CS S+ R + + T+ R+D+ GRVF +L G S+GG + ++ DDFTR + FL++KSDA +A R + A G+ + ++R D GG++ G F S ++L IK+E TP Y+PQYNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N S+ SPYE+WYG P PF Y R +P KL P G SC +G
Sbjct: 67 CSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVG 297
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 160 bits (406), Expect = 1.050e-41 Identity = 94/234 (40.17%), Postives = 132/234 (56.41%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPEGLQ--IGVIRMDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGAVGYLRRSKPEHKLAPHGASCIILG 672
C CS ++ + + + T++R+D+ GRVF++L G S+GG + M+ DDFTR + FLKHKSDA A R + A +G+ + ++R D GGE+ G +F S ++L IK+E TP Y+PQYNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N S+ SPYE+WYG P PF Y R +P KL P G SC +G
Sbjct: 699 CTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVG 929
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 160 bits (406), Expect = 1.060e-41 Identity = 94/234 (40.17%), Postives = 132/234 (56.41%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPEGLQ--IGVIRMDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGAVGYLRRSKPEHKLAPHGASCIILG 672
C CS ++ + + + T++R+D+ GRVF++L G S+GG + M+ DDFTR + FLKHKSDA A R + A +G+ + ++R D GGE+ G +F S ++L IK+E TP Y+PQYNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N S+ SPYE+WYG P PF Y R +P KL P G SC +G
Sbjct: 406 CTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVG 636
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 155 bits (393), Expect = 8.200e-41 Identity = 95/235 (40.43%), Postives = 130/235 (55.32%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLA---PEGLQIGVIRMDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGAVGYLRRSKPEHKLAPHGASCIILG 672
C CS S+ R + + T+ R+D+ GRVF++L G S+GG + M+ DDFTR + FLK++SDA A R + A P ++I +R D GGE+ G +F S ++L IK+E TP Y+PQYNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N S+ SPYE+WYG P PF Y R +P KL P G SC +G
Sbjct: 287 CSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 517
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 156 bits (394), Expect = 3.760e-40 Identity = 93/234 (39.74%), Postives = 130/234 (55.56%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPEGLQ--IGVIRMDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGAVGYLRRSKPEHKLAPHGASCIILG 672
C CS S+ R + + T+ R+D+ GRVF++L G S+GG + M+ DDFTR + FL++KSDA +A R + A G+ + ++R D GGE+ G +F S ++L IK+E TP Y+PQYNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N S+ PYE+WYG P PF Y R +P KL P G SC +G
Sbjct: 165 CSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 395
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 155 bits (393), Expect = 5.760e-40 Identity = 94/234 (40.17%), Postives = 130/234 (55.56%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPEGLQ--IGVIRMDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGAVGYLRRSKPEHKLAPHGASCIILG 672
C CS S+ R + T+ R+D+ GRVF++L G S+GG + M+ DDFTR + FL++KSDA +A R + A G+ + ++R D GGE+ G +F S ++L IK+E TP Y+PQYNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N S+ SPYE+WYG P PF Y R +P KL P G SC +G
Sbjct: 220 CSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 450
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 154 bits (388), Expect = 2.720e-39 Identity = 94/235 (40.00%), Postives = 131/235 (55.74%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPEGLQ--IGVIRMDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGR-RPTFDNIPPFGAVGYLRRSKPEHKLAPHGASCIILG 672
C CS + R A+ T N +D+ GRVF+NL G S+GG + M+ DDFTR + FL+ KSDA +A R + + A +G+ I ++R D GGE+ G +F S ++L IK+E TP ++P++NGV ER LGL+ + +A L V K+DRLWAEAM +AC+ N S+ SPYE+WYG RP PF Y + +P KL P G SC +G
Sbjct: 426 CSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRA-DGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLLPKGESCFYVG 656
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 153 bits (387), Expect = 3.310e-39 Identity = 92/234 (39.32%), Postives = 129/234 (55.13%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPEGLQ--IGVIRMDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGAVGYLRRSKPEHKLAPHGASCIILG 672
C CS S+ + + T+ R+D+ GRVF++L G S+GG + M+ DDFTR + FLK KSDA +A R + A +G+ + ++R D GGE+ G +F S ++L IK+E TP Y+PQYNGV ER LGL+ +A L V K+DRLWAEAM +AC+ N S+ SPYE+W+G + PF Y R +P KL P G +C +G
Sbjct: 605 CTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEA-SHARPYPFLKPAYCRWQRPS-KLLPKGEACFYVG 835
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 146 bits (369), Expect = 2.160e-38 Identity = 88/205 (42.93%), Postives = 117/205 (57.07%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPE-GLQIGVIRMDGGGEWHGQFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVALLRGVMEGKSDR-----LWAEAMAYACDMGNRCTSSSLDSG-TSPYELWYGRRPTFDNIPPF 594
C+ CS S+ + + KST+ RA R+F+NL G S+GGN + ++ DD TR+ V FLKHKSDA A + DY A ++ V R DGGGE+ GQF + GIK+E TPP TP+YNGV ERALGLL D +A E D LWAEA++ AC N CT+++ + G SP EL++G P + PF
Sbjct: 169 CLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMN-CTATTGNPGHKSPEELFHGTPPPVGSTHPF 372
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE) HSP 1 Score: 140 bits (354), Expect = 9.470e-35 Identity = 87/237 (36.71%), Postives = 123/237 (51.90%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPEG-LQIGVIRMDGGGEW-HGQFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGAVGYLR----RSKPEHKLAPHGASCIILG 672
C+ CS ++ +P T RA + R F+ LSG SLGG + ++ DD+TR+ V FLKHKSDA A + + A + V+R D GGE+ G+F K IK+E TP ++P+YNGV ERALGL+ D +A L G +S LWAEA+A++C+ N +++S SPYE+W+G P PP +L+ + K HK P C LG
Sbjct: 341 CLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPTAQKCFYLG 570 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52692.12582.1 >prot_H-elongata_contig52692.12582.1 ID=prot_H-elongata_contig52692.12582.1|Name=mRNA_H-elongata_contig52692.12582.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=224bp CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLback to top mRNA from alignment at H-elongata_contig52692:2361..3032+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52692.12582.1 ID=mRNA_H-elongata_contig52692.12582.1|Name=mRNA_H-elongata_contig52692.12582.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=672bp|location=Sequence derived from alignment at H-elongata_contig52692:2361..3032+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52692:2361..3032+ >mRNA_H-elongata_contig52692.12582.1 ID=mRNA_H-elongata_contig52692.12582.1|Name=mRNA_H-elongata_contig52692.12582.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1344bp|location=Sequence derived from alignment at H-elongata_contig52692:2361..3032+ (Himanthalia elongata Himel1 dioecious)back to top |