prot_H-elongata_contig52692.12582.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52692.12582.1
Unique Nameprot_H-elongata_contig52692.12582.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length224
Homology
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 7.060e-42
Identity = 92/234 (39.32%), Postives = 129/234 (55.13%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPEGLQ--IGVIRMDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGAVGYLRRSKPEHKLAPHGASCIILG 224
            C  CS S+  R  + + T+ R+D+  GRVF +L G     S+GG  + ++  DDFTR   + FL++KSDA +A R  +    A  G+   + ++R D GG++ G  F S  ++L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P G SC  +G
Sbjct:   67 CSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVG 297          
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.050e-41
Identity = 94/234 (40.17%), Postives = 132/234 (56.41%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPEGLQ--IGVIRMDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGAVGYLRRSKPEHKLAPHGASCIILG 224
            C  CS ++  +  + + T++R+D+  GRVF++L G     S+GG  + M+  DDFTR   + FLKHKSDA  A R  +    A +G+   + ++R D GGE+ G +F S  ++L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P G SC  +G
Sbjct:  699 CTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVG 929          
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.060e-41
Identity = 94/234 (40.17%), Postives = 132/234 (56.41%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPEGLQ--IGVIRMDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGAVGYLRRSKPEHKLAPHGASCIILG 224
            C  CS ++  +  + + T++R+D+  GRVF++L G     S+GG  + M+  DDFTR   + FLKHKSDA  A R  +    A +G+   + ++R D GGE+ G +F S  ++L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P G SC  +G
Sbjct:  406 CTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVG 636          
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 8.200e-41
Identity = 95/235 (40.43%), Postives = 130/235 (55.32%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLA---PEGLQIGVIRMDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGAVGYLRRSKPEHKLAPHGASCIILG 224
            C  CS S+  R  + + T+ R+D+  GRVF++L G     S+GG  + M+  DDFTR   + FLK++SDA  A R  +    A   P  ++I  +R D GGE+ G +F S  ++L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P G SC  +G
Sbjct:  287 CSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 517          
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 3.760e-40
Identity = 93/234 (39.74%), Postives = 130/234 (55.56%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPEGLQ--IGVIRMDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGAVGYLRRSKPEHKLAPHGASCIILG 224
            C  CS S+  R  + + T+ R+D+  GRVF++L G     S+GG  + M+  DDFTR   + FL++KSDA +A R  +    A  G+   + ++R D GGE+ G +F S  ++L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N    S+      PYE+WYG  P      PF    Y R  +P  KL P G SC  +G
Sbjct:  165 CSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 395          
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 5.760e-40
Identity = 94/234 (40.17%), Postives = 130/234 (55.56%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPEGLQ--IGVIRMDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGAVGYLRRSKPEHKLAPHGASCIILG 224
            C  CS S+  R  +   T+ R+D+  GRVF++L G     S+GG  + M+  DDFTR   + FL++KSDA +A R  +    A  G+   + ++R D GGE+ G +F S  ++L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P G SC  +G
Sbjct:  220 CSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 450          
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 2.720e-39
Identity = 94/235 (40.00%), Postives = 131/235 (55.74%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPEGLQ--IGVIRMDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGR-RPTFDNIPPFGAVGYLRRSKPEHKLAPHGASCIILG 224
            C  CS  +  R A+   T N +D+  GRVF+NL G     S+GG  + M+  DDFTR   + FL+ KSDA +A R  + +  A +G+   I ++R D GGE+ G +F S  ++L IK+E TP ++P++NGV ER LGL+ +  +A       L   V   K+DRLWAEAM +AC+  N    S+     SPYE+WYG  RP      PF    Y +  +P  KL P G SC  +G
Sbjct:  426 CSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRA-DGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLLPKGESCFYVG 656          
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 3.310e-39
Identity = 92/234 (39.32%), Postives = 129/234 (55.13%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPEGLQ--IGVIRMDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGAVGYLRRSKPEHKLAPHGASCIILG 224
            C  CS S+  +  +   T+ R+D+  GRVF++L G     S+GG  + M+  DDFTR   + FLK KSDA +A R  +    A +G+   + ++R D GGE+ G +F S  ++L IK+E TP Y+PQYNGV ER LGL+    +A       L   V   K+DRLWAEAM +AC+  N    S+     SPYE+W+G   +     PF    Y R  +P  KL P G +C  +G
Sbjct:  605 CTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEA-SHARPYPFLKPAYCRWQRPS-KLLPKGEACFYVG 835          
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.160e-38
Identity = 88/205 (42.93%), Postives = 117/205 (57.07%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPE-GLQIGVIRMDGGGEWHGQFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVALLRGVMEGKSDR-----LWAEAMAYACDMGNRCTSSSLDSG-TSPYELWYGRRPTFDNIPPF 198
            C+ CS S+ +   + KST+ RA     R+F+NL G     S+GGN + ++  DD TR+  V FLKHKSDA  A    + DY A     ++ V R DGGGE+ GQF     + GIK+E TPP TP+YNGV ERALGLL D  +A      E   D      LWAEA++ AC   N CT+++ + G  SP EL++G  P   +  PF
Sbjct:  169 CLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMN-CTATTGNPGHKSPEELFHGTPPPVGSTHPF 372          
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 9.470e-35
Identity = 87/237 (36.71%), Postives = 123/237 (51.90%), Query Frame = 0
Query:    1 CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPEG-LQIGVIRMDGGGEW-HGQFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVA-------LLRGVMEGKSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGAVGYLR----RSKPEHKLAPHGASCIILG 224
            C+ CS ++     +P  T  RA +   R F+ LSG     SLGG  + ++  DD+TR+  V FLKHKSDA  A    + +  A      + V+R D GGE+  G+F     K  IK+E TP ++P+YNGV ERALGL+ D  +A       L  G    +S  LWAEA+A++C+  N  +++S     SPYE+W+G  P     PP     +L+    + K  HK  P    C  LG
Sbjct:  341 CLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPTAQKCFYLG 570          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52692.12582.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVR5_9PHAE7.060e-4239.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBA7_9PHAE1.050e-4140.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE1.060e-4140.17Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE8.200e-4140.43Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L3Y0_9PHAE3.760e-4039.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRL9_9PHAE5.760e-4040.17Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JH25_9PHAE2.720e-3940.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M6_9PHAE3.310e-3939.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LL52_9PHAE2.160e-3842.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1N9_9PHAE9.470e-3536.71Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 15..201
e-value: 4.7E-27
score: 96.5
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 42..139
e-value: 1.1E-12
score: 48.2
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 21..189
score: 18.807
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 4..204
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 4..204
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 23..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52692contigH-elongata_contig52692:2361..3032 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52692.12582.1mRNA_H-elongata_contig52692.12582.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52692 2361..3032 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52692.12582.1 ID=prot_H-elongata_contig52692.12582.1|Name=mRNA_H-elongata_contig52692.12582.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=224bp
CVHCSESRVRRYAVPKSTENRADRPAGRVFINLSGPFHETSLGGNRFVML
CIDDFTRFKMVRFLKHKSDATNALRDIINDYLAPEGLQIGVIRMDGGGEW
HGQFLSFLSKLGIKRESTPPYTPQYNGVVERALGLLGDKTVALLRGVMEG
KSDRLWAEAMAYACDMGNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGA
VGYLRRSKPEHKLAPHGASCIILG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf