mRNA_H-elongata_contig52599.12564.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52599.12564.1
Unique NamemRNA_H-elongata_contig52599.12564.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: A0A6H5KZU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZU7_9PHAE)

HSP 1 Score: 432 bits (1110), Expect = 2.180e-138
Identity = 215/313 (68.69%), Postives = 252/313 (80.51%), Query Frame = 1
Query:    1 RYTAEWSRTLRTRGRAMATPDGWWNRALRLWRVGALANRDGKALMGTGGADDPLVVDVWGADTKATRGSH-ASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKDGEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYGSH 936
            RY++EW+RTLRTRGRAMA+ DGWWNR++R W   A   R  + ++GTG A  PLVV+    D     G   ASEEKELQEKVD EPVP TIAALKNHH YVLGK LLK E LRP AKAAGLVKG KV+LK+DV  L+GASRWK D L+VK SEL KP K+ TKKGEK+GEGT KLYG+WQTEPW P+ AVDGKVPKNEYGN+EFF+CSPA LP GT H++G+QI R+A++LGVDYAPAL GFETK GR+VPVLDGIIVCKEQ QMLRDAH  W+Q  LE++ K R +R++RRWRTLF GV+ GA++L+EYGSH
Sbjct:  727 RYSSEWARTLRTRGRAMASADGWWNRSMRKWGASA-DRRSRRKVIGTGAASSPLVVEGQRDDEANEDGDQGASEEKELQEKVDKEPVPNTIAALKNHHKYVLGKKLLKFEALRPGAKAAGLVKGSKVYLKTDVATLRGASRWKKDALQVKKSELDKPVKLATKKGEKEGEGTSKLYGDWQTEPWAPEAAVDGKVPKNEYGNLEFFDCSPAFLPTGTAHLRGEQIGRLAAKLGVDYAPALTGFETKVGRQVPVLDGIIVCKEQSQMLRDAHMTWQQMQLEKQVKVRGERVLRRWRTLFKGVLLGAQLLEEYGSH 1038          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: D8LJY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJY2_ECTSI)

HSP 1 Score: 422 bits (1084), Expect = 5.170e-135
Identity = 214/315 (67.94%), Postives = 251/315 (79.68%), Query Frame = 1
Query:    1 RYTAEWSRTLRTRGRAMATPDGWWNRALRLWRVGALANRDGKALMGTGGADD-PLVVDVWGAD-TKATRGSHASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKDGEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYGSHN 939
            RY++EW+RTLRTRGRAMA+ DGWWNR+LR W  GA A+R              PLVV+  G D         A EEKELQEKVD+EP+P TIAALKNHH YVLGK LLK E LRP AKAAGLVKG KV+LK+DV  L+GASRWK D L+VK SEL KP K+ TKKGEK+G+GT KLYG+WQTEPW P+ AVDGKVPKN+YGNVEFF+CSPA LP GT H++G+QI R+A++LGVDYAPAL GFETK GR+VPVLDGIIVCKEQ QMLRDAH  W+QT LE++ KAR QR++RRWRTLF GV+ GA++L+EYGSH+
Sbjct:  679 RYSSEWARTLRTRGRAMASADGWWNRSLRKW--GASAHRXXXXXXXXXXXXXXPLVVEGHGDDEANEDDDQGAIEEKELQEKVDNEPIPNTIAALKNHHKYVLGKKLLKFEALRPGAKAAGLVKGSKVYLKTDVATLRGASRWKKDALQVKKSELEKPVKLTTKKGEKEGDGTSKLYGDWQTEPWAPEAAVDGKVPKNDYGNVEFFDCSPAFLPTGTAHLRGEQIGRLAAKLGVDYAPALTGFETKVGRQVPVLDGIIVCKEQSQMLRDAHMTWQQTQLEKQVKARRQRVLRRWRTLFKGVLLGAQLLEEYGSHD 991          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: A0A7R9I670_9NEOP (Hypothetical protein n=1 Tax=Timema bartmani TaxID=61472 RepID=A0A7R9I670_9NEOP)

HSP 1 Score: 159 bits (403), Expect = 1.760e-41
Identity = 97/280 (34.64%), Postives = 151/280 (53.93%), Query Frame = 1
Query:  160 LVVDVWGADTKATRGSHASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRP-EAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKDGEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQ---RLVRRWRTLFLGVMEGARILQEYGSHN**YYSRAKILERERIN 987
            +  D W    +  RGS    +KE +E ++ +     + + KNH +YVL K LLK E + P +A   G ++G +VF +  V  L     W  +   V+  E  KP K++  + + D     +++GEWQ E ++P PAVDGKVP+N YGNVE F+  P +LP GT H+Q + ++RVA +L +D APA+VGF+   G   P  DG +VC+E   +L DA   W Q L E + + +++   R+   WR L  G++   R+   Y        S+ K+    +I+
Sbjct:   39 VAADWWEHSLRPWRGSWTPMDKEEEEDLEQQLHDRPLPSYKNHPLYVLRKDLLKFEAIYPPDAPTLGFIRGQEVFARECVKNLHSRETWVKEAKVVRLGE--KPYKIVKARPKYD-----RVFGEWQVEDYIPPPAVDGKVPRNAYGNVELFK--PCMLPKGTVHLQINGLNRVAKKLNIDCAPAVVGFDFHCGGSHPTYDGFVVCEEFVDILLDA---WNQELEESEKRRQDKHDKRVYGNWRRLIKGLLIRERLQARYSFERQEDSSKGKLKGLNKIS 306          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: W2QJ20_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2QJ20_PHYPN)

HSP 1 Score: 165 bits (417), Expect = 4.300e-41
Identity = 110/321 (34.27%), Postives = 172/321 (53.58%), Query Frame = 1
Query:    1 RYTAEWSRTLRTRGRAMATPDGWWNRALRLWRVGALANRDGKALMGTGGADDPLVVDVWGADTKATRGSHASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKD-------GEGTGKL--YGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLV-RRWRTLFLGVMEGARILQEYGS 933
            RYTA+WS++L  R       D W  + +  +    +  R       +G  +  +V                 E+K+L+    +E +P ++   + HH+Y+L + L + E L P  KA GL KG  VFL+  V  L+ A +W+  G +VK SE  KPAK  +K  + D       G+ +G L  +G WQT  + P P ++G +PKN+YGN+E +  SPA +P G  H++  +I  +A  LG+D+APA+VGFE + GR +P + GI+V +   +ML DAH   +Q  +E KA A  Q+LV +RW  L   ++   R+  +YG+
Sbjct:  357 RYTAQWSKSLELR-----LADSWLTQVIEQFNEDTMDQRPVDKTSRSGNVEKSIV----------------EEKKKLETLKLAEGMPTSLEGFRKHHLYILERYLGQFECLHPR-KAIGLFKGQPVFLREHVQPLESAFKWRRLGREVKESERQKPAKWQSKGNDNDDSDASEEGKPSGSLALFGLWQTTEFEPLPMINGHIPKNKYGNIEIW--SPAHIPRGAVHLRLPRIDSIAESLGIDFAPAVVGFEVRNGRPMPKMSGIVVAQSHEEMLLDAHAERQQQTIE-KAIAHNQKLVLKRWENLTKRLLLRQRLEDDYGA 652          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: UPI0018D989F2 (DNA repair protein complementing XP-C cells homolog n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D989F2)

HSP 1 Score: 165 bits (417), Expect = 9.820e-41
Identity = 97/234 (41.45%), Postives = 144/234 (61.54%), Query Frame = 1
Query:  217 EEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPE-AKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKDG--EGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVR---RWRTLFLGVM 900
            E++ LQ+++  +P+P +I+  KNHH+YVL + LLK E L PE A   G  +G  V+ ++ V  L     WK  GL ++  E  KP K++  +  K+   E    LYG+WQTE ++P  AVDGKVP+NEYGNVE F+  P++LP GT H+Q   + RVA ++GVD APA+VG++   G   PV DG +VCKE   +L D    WE+   E++ K  +++ +R    W+TL  G++
Sbjct:  495 EDEHLQKQLQEKPMPTSISEFKNHHLYVLKRHLLKFEALYPESATILGYCRGEAVYSRNCVHTLHTKETWKKQGLAIQHGE--KPYKMVKARPRKNKSHEPLLPLYGQWQTELYIPPAAVDGKVPRNEYGNVELFQ--PSMLPMGTVHLQIPGLHRVAQKIGVDCAPAMVGWDYHGGFCHPVFDGFVVCKEFTDILLDN---WEKDNAEREHKLNQKKRIRAEKNWKTLVTGLL 721          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: A0A024GVV3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GVV3_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.280e-40
Identity = 93/245 (37.96%), Postives = 138/245 (56.33%), Query Frame = 1
Query:  217 EEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVI-----TKKGEKDGEGTG-KLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYGS 933
            E+KELQE  D+E +P +I   + HH Y L + L + E L P  +  G+ KG +V+L+  + +L+ A  W   G  +K  E  +P K +     T+ G  D +     LYG WQTE + P   +DG +PKNE+GN+E +  S   LP G  H++   I+  AS++G+DYAPALVGFETK G   P  DGIIV     Q+L DAH   EQ  +E   +  +  + +RW+ L   ++  +R+ ++YG 
Sbjct:   23 EKKELQELADAERMPTSIEGFRRHHRYCLERHLGRLEVLYPR-QVIGIFKGQRVYLRCHIQKLQSARHWLRQGRVIKEDEKLQPYKKLNRNKDTRNGCDDRQSRDIALYGGWQTEDFAPSIVMDGILPKNEHGNIELW--SDKHLPVGAAHLRMPHITAAASKVGIDYAPALVGFETKNGISYPKFDGIIVALSHKQLLIDAHAHLEQRKIEHAIEQNQNLIHKRWKRLVQRMLIRSRLEKDYGK 264          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: A0A2B4SLG3_STYPI (DNA repair protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SLG3_STYPI)

HSP 1 Score: 165 bits (418), Expect = 1.510e-40
Identity = 97/248 (39.11%), Postives = 148/248 (59.68%), Query Frame = 1
Query:  217 EEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAA-GLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKD------GEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYGSHN 939
            E+  L++++  +P+P +I   KNH +YVL + LLK EGL PE  A  G  +G  V+ +  V  L    +W  + L VK  E  KP K++  + +++         T  L+G WQTE + P PA DGKVP+NEYGNVE F+  P +LP GT+H+Q + I RVA +LG+D A A++GF+   G   PV+DG++VC+E  Q L DA    EQ   ++KA+ RE+R++  W+ L   ++   R+ + Y + +
Sbjct:  771 EDSHLEDQLLDKPLPTSITEYKNHPLYVLKRHLLKFEGLYPETAAILGYCRGEAVYSRECVHLLHTREKWLNEALVVKQGE--KPYKIVKGRPKRNQPIHERDSVTIDLFGRWQTEKYKPPPAKDGKVPRNEYGNVELFQ--PCMLPPGTKHIQINGIQRVAKKLGIDCAQAVIGFDFHCGFSHPVIDGVVVCEEYEQTLLDAWHEEEQQAEKKKAEKREKRMLANWKLLTRSLLIRERLKKRYDTED 1014          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: UPI001BB19790 (DNA repair protein complementing XP-C cells homolog isoform X1 n=2 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB19790)

HSP 1 Score: 165 bits (418), Expect = 1.780e-40
Identity = 100/274 (36.50%), Postives = 157/274 (57.30%), Query Frame = 1
Query:  166 VDVWGADT----KATRGSHASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAA-GLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVIT-----KKGE---KDGEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVR---RWRTLFLGVMEGARILQEYGSHN 939
            VD W  +T    ++ +     E+ ++Q  + S+P+P ++A  KNH +Y L + LLK E L PE+ A  G  KG  V+ +  V  L     W  +G  ++ +E  KP K++      KKG    K  E T  ++GEWQ E ++P PAVDGKVP+NEYGNVE F+  P +LPAGT H++   +++VA +L +D APA++G++   G   PV+DG +VC+E  ++L     AWE+   EQ+ K +E+R  R    W+     ++   R+ + YG ++
Sbjct: 1349 VDEWWEETLKPYQSNKDRDRKEDLDVQSNLTSKPLPTSVAEYKNHPLYALKRHLLKFEALYPESAAVIGYCKGEAVYSRECVHTLHTRETWMKEGKAIRINE--KPYKMVKPRPKWKKGIGMIKTEESTLGIFGEWQVEDYIPPPAVDGKVPRNEYGNVELFK--PTMLPAGTVHLKIPGLNKVARKLDIDCAPAMMGWDFHSGFNHPVMDGFVVCEEHAEVLV---AAWEEDRAEQEKKEKEKREARAMNHWKLFIKSLLIRERLKERYGKND 1615          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: A0A329RR13_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RR13_9STRA)

HSP 1 Score: 161 bits (408), Expect = 7.960e-40
Identity = 113/329 (34.35%), Postives = 172/329 (52.28%), Query Frame = 1
Query:    1 RYTAEWSRTLRTRGRAMATPDGWWNRALRLWRVGALANRD----GKALMGTGGADDPLVVDVWGADTKATRGSHASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGE-----------KDGEGTGKL--YGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLV-RRWRTLFLGVMEGARILQEYGS 933
            RYT +WS++L  R       D W  R++  +       R        L+  G  ++ LV                 E+K+L+    +E +P ++   + HH+Y+L + L + E L P  K  GL KG  VFL+  V  L+ A +W+  G +VK SE  KPAK  +K  +           ++G+ +G L  +G WQT  + P P VDG+VPKN+YGN+E +  SPA +P G  H+   +I  +A  LG+D+APA+VGFE + GR +P + GI+V +   +ML DAH   +Q  +E KA A  Q+LV +RW      V+   R+  +YG+
Sbjct:  357 RYTVQWSKSLELR-----LADSWLKRSIERFNEDTTDQRPVTEAAARLVRPGDVENALV----------------QEKKKLETLKLAEGMPTSLEGFRKHHLYILERHLGQFECLHPR-KVIGLFKGQPVFLREHVQPLRSAFKWRRLGREVKESERQKPAKWQSKGSDPGGGDDSDEALQEGKPSGSLAFFGLWQTTEFEPPPMVDGRVPKNKYGNIEVW--SPAHVPRGAVHLHLPRIDAIAESLGIDFAPAVVGFEVRNGRPMPKMSGIVVAQSHEEMLLDAHAERQQQAIE-KAIAHNQKLVLKRWEKFTKRVLLRQRLEDDYGA 660          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: UPI00077A79C6 (DNA repair protein complementing XP-C cells homolog n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A79C6)

HSP 1 Score: 159 bits (401), Expect = 8.030e-40
Identity = 95/246 (38.62%), Postives = 145/246 (58.94%), Query Frame = 1
Query:  217 EEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAA-GLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKD------GEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYGS 933
            E+ +L++K+  +P+P +I   KNH +YVL + LLK E + PE  A  G  +G  ++ +  V  L    +W  + L VK  E  K  KV+  + +++         T  L+G WQTE + P PA DGKVP+NEYGNVE F   P +LP GT+H+Q + I RVA +LG+D A A+VGF+   G   PV+DG++VC+E  Q+L DA    E+    +KA+ RE+R++  W+ L   ++   R+ + Y +
Sbjct:  169 EDSQLEDKLLEKPLPTSITEFKNHPLYVLKRHLLKFEAIYPETAAILGYCRGEAIYSRDCVHLLHTREKWLNEALVVKQGE--KAYKVVKGRPKRNQPIHERDSVTIDLFGRWQTERYKPPPAKDGKVPRNEYGNVELF--LPCMLPPGTKHIQINGIQRVAKKLGIDCAQAVVGFDFHCGFSHPVIDGVVVCQEFEQVLLDAWREEEELAERRKAEKREKRMLANWKLLTRSLLIRERLKKRYDT 410          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZU7_9PHAE2.180e-13868.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJY2_ECTSI5.170e-13567.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9I670_9NEOP1.760e-4134.64Hypothetical protein n=1 Tax=Timema bartmani TaxID... [more]
W2QJ20_PHYPN4.300e-4134.27Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
UPI0018D989F29.820e-4141.45DNA repair protein complementing XP-C cells homolo... [more]
A0A024GVV3_9STRA1.280e-4037.96Uncharacterized protein (Fragment) n=1 Tax=Albugo ... [more]
A0A2B4SLG3_STYPI1.510e-4039.11DNA repair protein n=1 Tax=Stylophora pistillata T... [more]
UPI001BB197901.780e-4036.50DNA repair protein complementing XP-C cells homolo... [more]
A0A329RR13_9STRA7.960e-4034.35Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
UPI00077A79C68.030e-4038.62DNA repair protein complementing XP-C cells homolo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52599contigH-elongata_contig52599:151..3998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score399.1
Seed ortholog evalue1.9e-108
Seed eggNOG ortholog2880.D8LJY2
Preferred nameRAD4
KEGG koko:K10838
KEGG Pathwayko03420,map03420
GOsGO:0000109,GO:0000111,GO:0000217,GO:0000404,GO:0000405,GO:0000715,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003697,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006294,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007346,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009507,GO:0009536,GO:0009628,GO:0009987,GO:0010564,GO:0016020,GO:0016043,GO:0022607,GO:0030983,GO:0031974,GO:0031981,GO:0032135,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034644,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051716,GO:0051726,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070911,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071824,GO:0071840,GO:0071942,GO:0071944,GO:0090304,GO:0097159,GO:0104004,GO:1901360,GO:1901363,GO:1901987,GO:1901990,GO:1990391
EggNOG free text desc.mismatch repair
EggNOG OGsCOG5535@1,KOG2179@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRad4 beta-hairpin domain 2
Ec32 orthologEc-06_007410.1
Exons6
Model size1355
Cds size894
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52599.12564.1prot_H-elongata_contig52599.12564.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52599 199..3585 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930859.0187535-UTR-H-elongata_contig52599:150..1981622930859.0187535-UTR-H-elongata_contig52599:150..198Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52599 151..198 +
1691679600.726183-UTR-H-elongata_contig52599:150..1981691679600.726183-UTR-H-elongata_contig52599:150..198Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52599 151..198 +
1622930859.1383736-UTR-H-elongata_contig52599:3585..39981622930859.1383736-UTR-H-elongata_contig52599:3585..3998Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52599 3586..3998 +
1691679600.809109-UTR-H-elongata_contig52599:3585..39981691679600.809109-UTR-H-elongata_contig52599:3585..3998Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52599 3586..3998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930859.0388558-CDS-H-elongata_contig52599:198..2821622930859.0388558-CDS-H-elongata_contig52599:198..282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52599 199..282 +
1691679600.7382307-CDS-H-elongata_contig52599:198..2821691679600.7382307-CDS-H-elongata_contig52599:198..282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52599 199..282 +
1622930859.0605843-CDS-H-elongata_contig52599:1129..12491622930859.0605843-CDS-H-elongata_contig52599:1129..1249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52599 1130..1249 +
1691679600.750482-CDS-H-elongata_contig52599:1129..12491691679600.750482-CDS-H-elongata_contig52599:1129..1249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52599 1130..1249 +
1622930859.0783548-CDS-H-elongata_contig52599:1589..17781622930859.0783548-CDS-H-elongata_contig52599:1589..1778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52599 1590..1778 +
1691679600.7607555-CDS-H-elongata_contig52599:1589..17781691679600.7607555-CDS-H-elongata_contig52599:1589..1778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52599 1590..1778 +
1622930859.0932214-CDS-H-elongata_contig52599:2258..23931622930859.0932214-CDS-H-elongata_contig52599:2258..2393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52599 2259..2393 +
1691679600.770834-CDS-H-elongata_contig52599:2258..23931691679600.770834-CDS-H-elongata_contig52599:2258..2393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52599 2259..2393 +
1622930859.10625-CDS-H-elongata_contig52599:2641..28541622930859.10625-CDS-H-elongata_contig52599:2641..2854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52599 2642..2854 +
1691679600.7811806-CDS-H-elongata_contig52599:2641..28541691679600.7811806-CDS-H-elongata_contig52599:2641..2854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52599 2642..2854 +
1622930859.1224635-CDS-H-elongata_contig52599:3432..35851622930859.1224635-CDS-H-elongata_contig52599:3432..3585Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52599 3433..3585 +
1691679600.7928448-CDS-H-elongata_contig52599:3432..35851691679600.7928448-CDS-H-elongata_contig52599:3432..3585Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52599 3433..3585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52599.12564.1

>prot_H-elongata_contig52599.12564.1 ID=prot_H-elongata_contig52599.12564.1|Name=mRNA_H-elongata_contig52599.12564.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=298bp
MATPDGWWNRALRLWRVGALANRDGKALMGTGGADDPLVVDVWGADTKAT
RGSHASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAK
AAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEK
DGEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTE
HVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLR
DAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYGSHN*
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mRNA from alignment at H-elongata_contig52599:151..3998+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52599.12564.1 ID=mRNA_H-elongata_contig52599.12564.1|Name=mRNA_H-elongata_contig52599.12564.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3848bp|location=Sequence derived from alignment at H-elongata_contig52599:151..3998+ (Himanthalia elongata Himel1 dioecious)
AGGTACACGGCGGAGTGGTCGCGAACGCTTCGCACGAGGGGACGCGCCAT GGCGACTCCGGACGGATGGTGGAACAGAGCGCTGCGGCTGTGGAGGGTGG GGGCATTGGCGAACAGAGACGGTAAAGCCTTGGTGAGACGCCGATCCGGG CGGTGGGTGACGGGTGGGCTCTCTCTTCGTCCACTTTTGCGCGGGTCCCG CCGAGCCAACGAGAGGAACGACACGGCAGCATTTAACGACGGCATCTTTG CACAGTATATGTATGGTCATCACATACAGAGTGATAAGTGGCAGTAACAG TTTCATACCATGTTGGATTGTTCCGGATCGATTTGAGTCGAGCCTTTGTC ATACACTCTCCGCATTTGAACTACCGTTGATAATATATATATACATATTC CGCTTCCGTGCGATTCCCACGCGACGGGTATATTAATCTCGATCAGTTTT CTCTCTATTACCAGCATGAAATGCGGTCTTTGAGGGCTTGGGTGTGGTTT AGCCTTGTGGAAGTTTCCATGGATTTTCGCTGAAAGACAGGAGGGGGGCG TAGCCAGTGATTTGTAAGCTTTCGCCTGTTAACTCCCTTGGTGTACCGTT GAGGCCTCCAGTCCCCCGTTGCCTGGCACGAAGGGGATGCGGGAGCGGGG AAGAGATAGAGTATCACGTGTTCTCTCGCAAACGCTGCTAATTGTGACGA GACATAACACAATGAGGACGCGGCGTTAATCGTCTCTCTAGAGGACGGGG GCGGGGGCACAATCACGATTGCGTTACATCTACACCATATAATATTTTCA GTACTGTACTCGCGAGACCAAATTCTCAGGCTCGAACGGGGACAGGAGAA AAATATTTTCCCTGTTCAGCTGACCACGAGTAGAAGGCAAGCCAAACACG GTTGACCTTTTGCTAAATGTGTGACCAACAACAACAACTGTAATAATACT ATTTTTGCCCCTGCTATCGCAACGTGCAGATGGGCACCGGTGGGGCGGAC GACCCGTTGGTAGTGGACGTGTGGGGCGCGGACACGAAGGCCACGAGAGG TAGCCACGCCAGCGAGGAAAAGGAGCTGCAGGAGAAGGTCGACAGCGAGG TGAGGCACCGGTGAGACGAAAAACGAGTCGTACCCCCAGTTGACAAGAAC AGAGCCGTCTTGTGGCTTCTTGGGCACGATTCCGAAACGGTTCGACTGAT GATCGTATTAACAGTAGCCGCCATCGACTCCATCCACACACCTAGAGTGG TGTTATGTAATCCATCGAGAGCGTCCGCACCCGCGTGAAGGGTAATGATT TTAAGAGCAAGCTGTAAGCTCTTACGCCACATTCTCTCTCCCCATCCCTT AACCTCTTCCCCTGGCGGCGCTGCTGTCGCGCGCGCGCGCGCCCGTCATG CCGTGCCGTGCCTCCTTCTCCAATCCTTCCCCTCCGTAGCCTGTTCCCGG TACCATCGCGGCCCTTAAGAACCACCATATGTACGTTCTCGGCAAGAGCC TGCTCAAGCACGAGGGGCTAAGACCGGAGGCGAAGGCCGCTGGCTTGGTG AAGGGCTGCAAGGTGTTTTTGAAGAGCGACGTCGGCCGCCTCAAGGGTGC CAGCCGGTGGAAGCTGGACGGGCTGAAGGTTTGTCGGGGCAGGCTATAGT TCTGTGACCCTCTATTCTTGTGGATGACGATGATGATTGTGGATATTTTT CGTCAGCACGTGGACAAACAAGGATGGGAAATCAATCCTAGGGAGTGGGA AGGTGGTGAGATTTAAAAAAAACAAAAGATTAAGGGATAGCGCACGAGGT TCTCCCATGGGGCTTGGCGGAGTCTCATTCCCCATTTTAGTCGAATAACA GCGTCTGAGTTTCATGTGCGTAATGTTGCGACGAACGAAAATGTGTCGGG TAGAACGACCTAATTTCCCAGCCAATGCCTTGCCCTGGGCGTACGGAGAA GCCATCACCGCCTTTGCAAACCCTGGAAATATTTCTTGGGCGCCCGCTGA CCGCCGGGCACGAAGCAGCTCACCTCCTCGCCGTTTCCTTTCAATTACAC CGTATATCGTTCGTTCGATCGATCCTCTCCGCCCCCCCCCTCTCTACCCC CTCTGAAGGTGAAATGCTCTGAGCTGGGAAAGCCTGCCAAGGTTATTACC AAGAAGGGCGAAAAGGACGGCGAGGGCACCGGAAAGCTTTACGGCGAGTG GCAGACCGAGCCCTGGGTGCCCAAGCCAGCCGTCGACGGCAAGGTCGGAA GCGCGCCTTCGCTTGCATTCAGTGGTTACGCGCGGCATGGCATCGCATAG ACGGCACAAAAGCGATAGCCGCCATAGCAGCGATATCGATAGCCATCGCG ATCGTGGGTTATATGGACAAGTATATTCCCGTAAAGAGTATGCACCTGGC ATGGAGAATGTGATTTATTCCCCGTCGTTGCGTCGCGCGTCGCACGTCAC GGTTCCTCGTGGAATCAATACCGACTGGTTTTCTATCGCAGGTGCCCAAA AACGAGTACGGCAATGTGGAGTTCTTCGAGTGCAGTCCGGCGCTGTTGCC GGCGGGGACGGAGCACGTTCAGGGCGACCAGATATCGCGGGTGGCCTCGA GGCTCGGGGTGGACTACGCCCCGGCTCTGGTCGGGTTCGAGACGAAGCAG GGCCGTCGGGTGCCCGTTCTGGACGGTATTATTGTGTGCAAGGAGCAATG CCAGGTGACCTGCCGCGTACGCTAAACTGCTCCTTGAAGTACAGTTACTT GCGCGCGCTCGAATTTGTTGGAAATTTTTGTGCGGCCTAGGGGATCGAAC CCTTCAGCGCTCTTCCCAACGGACAACGGACACGCCGTGGATTTGCTTGC GTGGTCGATAGGAGATGACGGCTCGGTAAATGAAGGGCTCCGAGATTTAT TTGATCGATTAGTACGCTTCGCCCGTTCGCCGTCCCCAAATGCGATAAGG CAAGCGGCGAAACTTGGGGGAATTGGTTACGATCGTGATTTTGCAGTCGT AAAGCCGGAGGGTAGATAAAATATGCTTGGGGGGTTAGACTGCGTCGACG TTGACGGTTGAGGATGACACCGCGCGGCGCGACAACGGTACTGTATGGTT TGTTGGTCCCCGATCCCTGTGCGTAGAGATGGAGCAGTCAAGCTTATGTC ACTGTCGCGTGGACTCTTCCGTCTTCTGTCGCAAGAGAGCAACGCTTGAA AGGTATGATAATCTCCGCGGGCTCTTTGCTGCAACTCATCGCGGTATGGT ATCGCTTGGTCGTGCGCGCACACGGCGTCCAGATGCTTCGAGACGCGCAC ACGGCGTGGGAACAGACGCTCCTGGAGCAGAAAGCCAAGGCCCGCGAGCA GAGATTGGTGAGGAGATGGCGCACGCTCTTCCTGGGGGTGATGGAGGGAG CAAGAATACTCCAAGAATACGGGAGTCACAACTAATAATATTACAGTAGA GCGAAAATTTTGGAGCGCGAACGTATCAATTTTGTTTTGCTTTGTCTTTT TCTTTTTTTTTACAAGTACGTACGTACGTACGCGCCGCCGAATTACTTGG CTGGCGGTGGAGAGCCGGACGGTGGGGCGGTGCCGAGAGGCGAAATTTCG AAAAAAAGAGGGGTCACGTGTTTTGCGGAGGATGTTCTGGTATATGACAA GTTTCAAGGGCCGCGAAGATATTTCGAGGGTCGGTAAGGGATGATCCGGC GAAGAAGGTAGCAATTTGCAATCCCACCAAGCGGTTCTCGCCCCCGAGGT GACGGATGACAGCACCGGCCCTGCCACTCGTACTGCTAATACTAATATTA CTCTATGCTAGTACAGTATATTTTACCAACGAGGAGATCGACAGGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig52599:151..3998+

>mRNA_H-elongata_contig52599.12564.1 ID=mRNA_H-elongata_contig52599.12564.1|Name=mRNA_H-elongata_contig52599.12564.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1788bp|location=Sequence derived from alignment at H-elongata_contig52599:151..3998+ (Himanthalia elongata Himel1 dioecious)
ATGGCGACTCCGGACGGATGGTGGAACAGAGCGCTGCGGCTGTGGAGGGT
GGGGGCATTGGCGAACAGAGACGGTAAAGCCTTGATGGCGACTCCGGACG
GATGGTGGAACAGAGCGCTGCGGCTGTGGAGGGTGGGGGCATTGGCGAAC
AGAGACGGTAAAGCCTTGATGGGCACCGGTGGGGCGGACGACCCGTTGGT
AGTGGACGTGTGGGGCGCGGACACGAAGGCCACGAGAGGTAGCCACGCCA
GCGAGGAAAAGGAGCTGCAGGAGAAGGTCGACAGCGAGATGGGCACCGGT
GGGGCGGACGACCCGTTGGTAGTGGACGTGTGGGGCGCGGACACGAAGGC
CACGAGAGGTAGCCACGCCAGCGAGGAAAAGGAGCTGCAGGAGAAGGTCG
ACAGCGAGCCTGTTCCCGGTACCATCGCGGCCCTTAAGAACCACCATATG
TACGTTCTCGGCAAGAGCCTGCTCAAGCACGAGGGGCTAAGACCGGAGGC
GAAGGCCGCTGGCTTGGTGAAGGGCTGCAAGGTGTTTTTGAAGAGCGACG
TCGGCCGCCTCAAGGGTGCCAGCCGGTGGAAGCTGGACGGGCTGAAGCCT
GTTCCCGGTACCATCGCGGCCCTTAAGAACCACCATATGTACGTTCTCGG
CAAGAGCCTGCTCAAGCACGAGGGGCTAAGACCGGAGGCGAAGGCCGCTG
GCTTGGTGAAGGGCTGCAAGGTGTTTTTGAAGAGCGACGTCGGCCGCCTC
AAGGGTGCCAGCCGGTGGAAGCTGGACGGGCTGAAGGTGAAATGCTCTGA
GCTGGGAAAGCCTGCCAAGGTTATTACCAAGAAGGGCGAAAAGGACGGCG
AGGGCACCGGAAAGCTTTACGGCGAGTGGCAGACCGAGCCCTGGGTGCCC
AAGCCAGCCGTCGACGGCAAGGTGAAATGCTCTGAGCTGGGAAAGCCTGC
CAAGGTTATTACCAAGAAGGGCGAAAAGGACGGCGAGGGCACCGGAAAGC
TTTACGGCGAGTGGCAGACCGAGCCCTGGGTGCCCAAGCCAGCCGTCGAC
GGCAAGGTGCCCAAAAACGAGTACGGCAATGTGGAGTTCTTCGAGTGCAG
TCCGGCGCTGTTGCCGGCGGGGACGGAGCACGTTCAGGGCGACCAGATAT
CGCGGGTGGCCTCGAGGCTCGGGGTGGACTACGCCCCGGCTCTGGTCGGG
TTCGAGACGAAGCAGGGCCGTCGGGTGCCCGTTCTGGACGGTATTATTGT
GTGCAAGGAGCAATGCCAGGTGCCCAAAAACGAGTACGGCAATGTGGAGT
TCTTCGAGTGCAGTCCGGCGCTGTTGCCGGCGGGGACGGAGCACGTTCAG
GGCGACCAGATATCGCGGGTGGCCTCGAGGCTCGGGGTGGACTACGCCCC
GGCTCTGGTCGGGTTCGAGACGAAGCAGGGCCGTCGGGTGCCCGTTCTGG
ACGGTATTATTGTGTGCAAGGAGCAATGCCAGATGCTTCGAGACGCGCAC
ACGGCGTGGGAACAGACGCTCCTGGAGCAGAAAGCCAAGGCCCGCGAGCA
GAGATTGGTGAGGAGATGGCGCACGCTCTTCCTGGGGGTGATGGAGGGAG
CAAGAATACTCCAAGAATACGGGAGTCACAACTAAATGCTTCGAGACGCG
CACACGGCGTGGGAACAGACGCTCCTGGAGCAGAAAGCCAAGGCCCGCGA
GCAGAGATTGGTGAGGAGATGGCGCACGCTCTTCCTGGGGGTGATGGAGG
GAGCAAGAATACTCCAAGAATACGGGAGTCACAACTAA
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