mRNA_H-elongata_contig52599.12564.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: A0A6H5KZU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZU7_9PHAE) HSP 1 Score: 432 bits (1110), Expect = 2.180e-138 Identity = 215/313 (68.69%), Postives = 252/313 (80.51%), Query Frame = 1
Query: 1 RYTAEWSRTLRTRGRAMATPDGWWNRALRLWRVGALANRDGKALMGTGGADDPLVVDVWGADTKATRGSH-ASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKDGEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYGSH 936
RY++EW+RTLRTRGRAMA+ DGWWNR++R W A R + ++GTG A PLVV+ D G ASEEKELQEKVD EPVP TIAALKNHH YVLGK LLK E LRP AKAAGLVKG KV+LK+DV L+GASRWK D L+VK SEL KP K+ TKKGEK+GEGT KLYG+WQTEPW P+ AVDGKVPKNEYGN+EFF+CSPA LP GT H++G+QI R+A++LGVDYAPAL GFETK GR+VPVLDGIIVCKEQ QMLRDAH W+Q LE++ K R +R++RRWRTLF GV+ GA++L+EYGSH
Sbjct: 727 RYSSEWARTLRTRGRAMASADGWWNRSMRKWGASA-DRRSRRKVIGTGAASSPLVVEGQRDDEANEDGDQGASEEKELQEKVDKEPVPNTIAALKNHHKYVLGKKLLKFEALRPGAKAAGLVKGSKVYLKTDVATLRGASRWKKDALQVKKSELDKPVKLATKKGEKEGEGTSKLYGDWQTEPWAPEAAVDGKVPKNEYGNLEFFDCSPAFLPTGTAHLRGEQIGRLAAKLGVDYAPALTGFETKVGRQVPVLDGIIVCKEQSQMLRDAHMTWQQMQLEKQVKVRGERVLRRWRTLFKGVLLGAQLLEEYGSH 1038
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: D8LJY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJY2_ECTSI) HSP 1 Score: 422 bits (1084), Expect = 5.170e-135 Identity = 214/315 (67.94%), Postives = 251/315 (79.68%), Query Frame = 1
Query: 1 RYTAEWSRTLRTRGRAMATPDGWWNRALRLWRVGALANRDGKALMGTGGADD-PLVVDVWGAD-TKATRGSHASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKDGEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYGSHN 939
RY++EW+RTLRTRGRAMA+ DGWWNR+LR W GA A+R PLVV+ G D A EEKELQEKVD+EP+P TIAALKNHH YVLGK LLK E LRP AKAAGLVKG KV+LK+DV L+GASRWK D L+VK SEL KP K+ TKKGEK+G+GT KLYG+WQTEPW P+ AVDGKVPKN+YGNVEFF+CSPA LP GT H++G+QI R+A++LGVDYAPAL GFETK GR+VPVLDGIIVCKEQ QMLRDAH W+QT LE++ KAR QR++RRWRTLF GV+ GA++L+EYGSH+
Sbjct: 679 RYSSEWARTLRTRGRAMASADGWWNRSLRKW--GASAHRXXXXXXXXXXXXXXPLVVEGHGDDEANEDDDQGAIEEKELQEKVDNEPIPNTIAALKNHHKYVLGKKLLKFEALRPGAKAAGLVKGSKVYLKTDVATLRGASRWKKDALQVKKSELEKPVKLTTKKGEKEGDGTSKLYGDWQTEPWAPEAAVDGKVPKNDYGNVEFFDCSPAFLPTGTAHLRGEQIGRLAAKLGVDYAPALTGFETKVGRQVPVLDGIIVCKEQSQMLRDAHMTWQQTQLEKQVKARRQRVLRRWRTLFKGVLLGAQLLEEYGSHD 991
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: A0A7R9I670_9NEOP (Hypothetical protein n=1 Tax=Timema bartmani TaxID=61472 RepID=A0A7R9I670_9NEOP) HSP 1 Score: 159 bits (403), Expect = 1.760e-41 Identity = 97/280 (34.64%), Postives = 151/280 (53.93%), Query Frame = 1
Query: 160 LVVDVWGADTKATRGSHASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRP-EAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKDGEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQ---RLVRRWRTLFLGVMEGARILQEYGSHN**YYSRAKILERERIN 987
+ D W + RGS +KE +E ++ + + + KNH +YVL K LLK E + P +A G ++G +VF + V L W + V+ E KP K++ + + D +++GEWQ E ++P PAVDGKVP+N YGNVE F+ P +LP GT H+Q + ++RVA +L +D APA+VGF+ G P DG +VC+E +L DA W Q L E + + +++ R+ WR L G++ R+ Y S+ K+ +I+
Sbjct: 39 VAADWWEHSLRPWRGSWTPMDKEEEEDLEQQLHDRPLPSYKNHPLYVLRKDLLKFEAIYPPDAPTLGFIRGQEVFARECVKNLHSRETWVKEAKVVRLGE--KPYKIVKARPKYD-----RVFGEWQVEDYIPPPAVDGKVPRNAYGNVELFK--PCMLPKGTVHLQINGLNRVAKKLNIDCAPAVVGFDFHCGGSHPTYDGFVVCEEFVDILLDA---WNQELEESEKRRQDKHDKRVYGNWRRLIKGLLIRERLQARYSFERQEDSSKGKLKGLNKIS 306
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: W2QJ20_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2QJ20_PHYPN) HSP 1 Score: 165 bits (417), Expect = 4.300e-41 Identity = 110/321 (34.27%), Postives = 172/321 (53.58%), Query Frame = 1
Query: 1 RYTAEWSRTLRTRGRAMATPDGWWNRALRLWRVGALANRDGKALMGTGGADDPLVVDVWGADTKATRGSHASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKD-------GEGTGKL--YGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLV-RRWRTLFLGVMEGARILQEYGS 933
RYTA+WS++L R D W + + + + R +G + +V E+K+L+ +E +P ++ + HH+Y+L + L + E L P KA GL KG VFL+ V L+ A +W+ G +VK SE KPAK +K + D G+ +G L +G WQT + P P ++G +PKN+YGN+E + SPA +P G H++ +I +A LG+D+APA+VGFE + GR +P + GI+V + +ML DAH +Q +E KA A Q+LV +RW L ++ R+ +YG+
Sbjct: 357 RYTAQWSKSLELR-----LADSWLTQVIEQFNEDTMDQRPVDKTSRSGNVEKSIV----------------EEKKKLETLKLAEGMPTSLEGFRKHHLYILERYLGQFECLHPR-KAIGLFKGQPVFLREHVQPLESAFKWRRLGREVKESERQKPAKWQSKGNDNDDSDASEEGKPSGSLALFGLWQTTEFEPLPMINGHIPKNKYGNIEIW--SPAHIPRGAVHLRLPRIDSIAESLGIDFAPAVVGFEVRNGRPMPKMSGIVVAQSHEEMLLDAHAERQQQTIE-KAIAHNQKLVLKRWENLTKRLLLRQRLEDDYGA 652
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: UPI0018D989F2 (DNA repair protein complementing XP-C cells homolog n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D989F2) HSP 1 Score: 165 bits (417), Expect = 9.820e-41 Identity = 97/234 (41.45%), Postives = 144/234 (61.54%), Query Frame = 1
Query: 217 EEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPE-AKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKDG--EGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVR---RWRTLFLGVM 900
E++ LQ+++ +P+P +I+ KNHH+YVL + LLK E L PE A G +G V+ ++ V L WK GL ++ E KP K++ + K+ E LYG+WQTE ++P AVDGKVP+NEYGNVE F+ P++LP GT H+Q + RVA ++GVD APA+VG++ G PV DG +VCKE +L D WE+ E++ K +++ +R W+TL G++
Sbjct: 495 EDEHLQKQLQEKPMPTSISEFKNHHLYVLKRHLLKFEALYPESATILGYCRGEAVYSRNCVHTLHTKETWKKQGLAIQHGE--KPYKMVKARPRKNKSHEPLLPLYGQWQTELYIPPAAVDGKVPRNEYGNVELFQ--PSMLPMGTVHLQIPGLHRVAQKIGVDCAPAMVGWDYHGGFCHPVFDGFVVCKEFTDILLDN---WEKDNAEREHKLNQKKRIRAEKNWKTLVTGLL 721
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: A0A024GVV3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GVV3_9STRA) HSP 1 Score: 155 bits (392), Expect = 1.280e-40 Identity = 93/245 (37.96%), Postives = 138/245 (56.33%), Query Frame = 1
Query: 217 EEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVI-----TKKGEKDGEGTG-KLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYGS 933
E+KELQE D+E +P +I + HH Y L + L + E L P + G+ KG +V+L+ + +L+ A W G +K E +P K + T+ G D + LYG WQTE + P +DG +PKNE+GN+E + S LP G H++ I+ AS++G+DYAPALVGFETK G P DGIIV Q+L DAH EQ +E + + + +RW+ L ++ +R+ ++YG
Sbjct: 23 EKKELQELADAERMPTSIEGFRRHHRYCLERHLGRLEVLYPR-QVIGIFKGQRVYLRCHIQKLQSARHWLRQGRVIKEDEKLQPYKKLNRNKDTRNGCDDRQSRDIALYGGWQTEDFAPSIVMDGILPKNEHGNIELW--SDKHLPVGAAHLRMPHITAAASKVGIDYAPALVGFETKNGISYPKFDGIIVALSHKQLLIDAHAHLEQRKIEHAIEQNQNLIHKRWKRLVQRMLIRSRLEKDYGK 264
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: A0A2B4SLG3_STYPI (DNA repair protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SLG3_STYPI) HSP 1 Score: 165 bits (418), Expect = 1.510e-40 Identity = 97/248 (39.11%), Postives = 148/248 (59.68%), Query Frame = 1
Query: 217 EEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAA-GLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKD------GEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYGSHN 939
E+ L++++ +P+P +I KNH +YVL + LLK EGL PE A G +G V+ + V L +W + L VK E KP K++ + +++ T L+G WQTE + P PA DGKVP+NEYGNVE F+ P +LP GT+H+Q + I RVA +LG+D A A++GF+ G PV+DG++VC+E Q L DA EQ ++KA+ RE+R++ W+ L ++ R+ + Y + +
Sbjct: 771 EDSHLEDQLLDKPLPTSITEYKNHPLYVLKRHLLKFEGLYPETAAILGYCRGEAVYSRECVHLLHTREKWLNEALVVKQGE--KPYKIVKGRPKRNQPIHERDSVTIDLFGRWQTEKYKPPPAKDGKVPRNEYGNVELFQ--PCMLPPGTKHIQINGIQRVAKKLGIDCAQAVIGFDFHCGFSHPVIDGVVVCEEYEQTLLDAWHEEEQQAEKKKAEKREKRMLANWKLLTRSLLIRERLKKRYDTED 1014
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: UPI001BB19790 (DNA repair protein complementing XP-C cells homolog isoform X1 n=2 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB19790) HSP 1 Score: 165 bits (418), Expect = 1.780e-40 Identity = 100/274 (36.50%), Postives = 157/274 (57.30%), Query Frame = 1
Query: 166 VDVWGADT----KATRGSHASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAA-GLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVIT-----KKGE---KDGEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVR---RWRTLFLGVMEGARILQEYGSHN 939
VD W +T ++ + E+ ++Q + S+P+P ++A KNH +Y L + LLK E L PE+ A G KG V+ + V L W +G ++ +E KP K++ KKG K E T ++GEWQ E ++P PAVDGKVP+NEYGNVE F+ P +LPAGT H++ +++VA +L +D APA++G++ G PV+DG +VC+E ++L AWE+ EQ+ K +E+R R W+ ++ R+ + YG ++
Sbjct: 1349 VDEWWEETLKPYQSNKDRDRKEDLDVQSNLTSKPLPTSVAEYKNHPLYALKRHLLKFEALYPESAAVIGYCKGEAVYSRECVHTLHTRETWMKEGKAIRINE--KPYKMVKPRPKWKKGIGMIKTEESTLGIFGEWQVEDYIPPPAVDGKVPRNEYGNVELFK--PTMLPAGTVHLKIPGLNKVARKLDIDCAPAMMGWDFHSGFNHPVMDGFVVCEEHAEVLV---AAWEEDRAEQEKKEKEKREARAMNHWKLFIKSLLIRERLKERYGKND 1615
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: A0A329RR13_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RR13_9STRA) HSP 1 Score: 161 bits (408), Expect = 7.960e-40 Identity = 113/329 (34.35%), Postives = 172/329 (52.28%), Query Frame = 1
Query: 1 RYTAEWSRTLRTRGRAMATPDGWWNRALRLWRVGALANRD----GKALMGTGGADDPLVVDVWGADTKATRGSHASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGE-----------KDGEGTGKL--YGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLV-RRWRTLFLGVMEGARILQEYGS 933
RYT +WS++L R D W R++ + R L+ G ++ LV E+K+L+ +E +P ++ + HH+Y+L + L + E L P K GL KG VFL+ V L+ A +W+ G +VK SE KPAK +K + ++G+ +G L +G WQT + P P VDG+VPKN+YGN+E + SPA +P G H+ +I +A LG+D+APA+VGFE + GR +P + GI+V + +ML DAH +Q +E KA A Q+LV +RW V+ R+ +YG+
Sbjct: 357 RYTVQWSKSLELR-----LADSWLKRSIERFNEDTTDQRPVTEAAARLVRPGDVENALV----------------QEKKKLETLKLAEGMPTSLEGFRKHHLYILERHLGQFECLHPR-KVIGLFKGQPVFLREHVQPLRSAFKWRRLGREVKESERQKPAKWQSKGSDPGGGDDSDEALQEGKPSGSLAFFGLWQTTEFEPPPMVDGRVPKNKYGNIEVW--SPAHVPRGAVHLHLPRIDAIAESLGIDFAPAVVGFEVRNGRPMPKMSGIVVAQSHEEMLLDAHAERQQQAIE-KAIAHNQKLVLKRWEKFTKRVLLRQRLEDDYGA 660
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: UPI00077A79C6 (DNA repair protein complementing XP-C cells homolog n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A79C6) HSP 1 Score: 159 bits (401), Expect = 8.030e-40 Identity = 95/246 (38.62%), Postives = 145/246 (58.94%), Query Frame = 1
Query: 217 EEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAA-GLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKD------GEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYGS 933
E+ +L++K+ +P+P +I KNH +YVL + LLK E + PE A G +G ++ + V L +W + L VK E K KV+ + +++ T L+G WQTE + P PA DGKVP+NEYGNVE F P +LP GT+H+Q + I RVA +LG+D A A+VGF+ G PV+DG++VC+E Q+L DA E+ +KA+ RE+R++ W+ L ++ R+ + Y +
Sbjct: 169 EDSQLEDKLLEKPLPTSITEFKNHPLYVLKRHLLKFEAIYPETAAILGYCRGEAIYSRDCVHLLHTREKWLNEALVVKQGE--KAYKVVKGRPKRNQPIHERDSVTIDLFGRWQTERYKPPPAKDGKVPRNEYGNVELF--LPCMLPPGTKHIQINGIQRVAKKLGIDCAQAVVGFDFHCGFSHPVIDGVVVCQEFEQVLLDAWREEEELAERRKAEKREKRMLANWKLLTRSLLIRERLKKRYDT 410 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52599.12564.1 >prot_H-elongata_contig52599.12564.1 ID=prot_H-elongata_contig52599.12564.1|Name=mRNA_H-elongata_contig52599.12564.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=298bp MATPDGWWNRALRLWRVGALANRDGKALMGTGGADDPLVVDVWGADTKATback to top mRNA from alignment at H-elongata_contig52599:151..3998+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52599.12564.1 ID=mRNA_H-elongata_contig52599.12564.1|Name=mRNA_H-elongata_contig52599.12564.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3848bp|location=Sequence derived from alignment at H-elongata_contig52599:151..3998+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52599:151..3998+ >mRNA_H-elongata_contig52599.12564.1 ID=mRNA_H-elongata_contig52599.12564.1|Name=mRNA_H-elongata_contig52599.12564.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1788bp|location=Sequence derived from alignment at H-elongata_contig52599:151..3998+ (Himanthalia elongata Himel1 dioecious)back to top |