mRNA_H-elongata_contig52291.12536.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52291.12536.1
Unique NamemRNA_H-elongata_contig52291.12536.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 2.250e-91
Identity = 161/363 (44.35%), Postives = 217/363 (59.78%), Query Frame = 1
Query:    7 KSTSQRLLNWRTFMSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRSIAVVAPTDADYSFPSMGEIRDRQD----SYTDGKAGLDSPLGSVVRGGNGLYRVDYGGCPA------ERFLQVRLV-CAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLG-----------DSDGYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILERVLVLGTP*VFMNDGAPHFKNETLNLVATKLGASHRFSVAYSSWSNGTVERMNLEVVRTFRAVMNERGRLLSEWPDSIFAVQFALNSAYRERMGATPFQLMTG 1029
            K+T+QRL NW+  + ++ Y I+HI G  N WG+LLSR  ++            V  RS AV  P+  D + PS   IR+ Q     S  D  A     LG V     GL+RV   G          R +Q+RL+ CAHM+EAGH  + ATMHRL  YC W  M  DV EFVQQCLHC+DS++G ++PRP GE +H    GEVLHFDYL +G           +SDGY Y+LV++DDLS F  ++   +CT+ ++A+ +L     LG P V+++D A HFKN  ++ +   LG   RF+VA S WSNGT ERM  E+VRT +AV+ ER R + +W D + AVQ+ALN+AYRER  +TP+ +M G
Sbjct:  296 KTTAQRLENWKAVLGQYDYTIQHISGERNCWGDLLSRWVNVPA----------VSNRSAAVFMPSTPDCNLPSKNAIREVQQTVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFG 648          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 2.380e-87
Identity = 161/363 (44.35%), Postives = 217/363 (59.78%), Query Frame = 1
Query:    7 KSTSQRLLNWRTFMSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRSIAVVAPTDADYSFPSMGEIRDRQD----SYTDGKAGLDSPLGSVVRGGNGLYRVDYGGCPA------ERFLQVRLV-CAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLG-----------DSDGYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILERVLVLGTP*VFMNDGAPHFKNETLNLVATKLGASHRFSVAYSSWSNGTVERMNLEVVRTFRAVMNERGRLLSEWPDSIFAVQFALNSAYRERMGATPFQLMTG 1029
            K+T+QRL NW+  + ++ Y I+HI G  N WG+LLSR  ++            V  RS AV  P+  D + PS   IR+ Q     S  D  A     LG V     GL+RV   G          R +Q+RL+ CAHM+EAGH  + ATMHRL  YC W  M  DV EFVQQCLHC+DS++G ++PRP GE +H    GEVLHFDYL +G           +SDGY Y+LV++DDLS F  ++   +CT+ ++A+ +L     LG P V+++D A HFKN  ++ +   LG   RF+VA S WSNGT ERM  E+VRT +AV+ ER R + +W D + AVQ+ALN+AYRER  +TP+ +M G
Sbjct: 1072 KTTAQRLENWKAVLGQYDYTIQHISGERNCWGDLLSRWVNVPA----------VSNRSAAVFMPSTPDCNLPSKNAIREVQQTVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFG 1424          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 286 bits (733), Expect = 1.060e-83
Identity = 159/368 (43.21%), Postives = 221/368 (60.05%), Query Frame = 1
Query:    1 LSKSTSQRLLNWRTFMSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRSIAVVAPTDADYSFPSMGEIRDRQDSYTDGKAGLDSP-------LGSVVRGGNGLYRVDYGG-----CPAERF-LQVRL-VCAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLGDS-----------DGYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILERVLVLGTP*VFMNDGAPHFKNETLNLVATKLGASHRFSVAYSSWSNGTVERMNLEVVRTFRAVMNERGRLLSEWPDSIFAVQFALNSAYRERMGATPFQLMTG 1029
            ++K+T+QRL  W+  + ++ Y IRHI G  N WG+LLSR  S+            V VR+ AV AP++ D + PS   +RD Q +       L  P       +G+      GL+RV   G      P +   LQVRL VCAHM+EAGH    AT+ RL  YC W  M+E VT+FV+QCLHC+DS+AG  +PRPLGE +H T  GEV+HFDYL +G S           +G+ Y+LV++DD+S +V L+   +CT+ ++A+ +L    +LG P V+++D A HFKN  +  + T LG    FSVA S WSNGT ERM  EVVRT +A++ E      +W D + AVQ+ALN+A+RER G+TP+ +M G
Sbjct: 1169 VAKTTAQRLDQWKAVLGQYDYTIRHISGERNCWGDLLSRWVSVPS----------VSVRAAAVYAPSEPDAAMPSKQVVRDAQQAARSKLGALAGPASSFSTAVGTATLDAEGLFRVGMNGRDVLWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDWVDLVPAVQWALNTAFRERYGSTPYHVMFG 1526          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 4.160e-58
Identity = 100/201 (49.75%), Postives = 135/201 (67.16%), Query Frame = 1
Query:  460 MKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLG-----------DSDGYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILERVLVLGTP*VFMNDGAPHFKNETLNLVATKLGASHRFSVAYSSWSNGTVERMNLEVVRTFRAVMNERGRLLSEWPDSIFAVQFALNSAYRERMGATPFQLMTG 1029
            M  DV EFVQQCLHC+DS++G ++PRP GE +H    GEVLHFDYL +G           +SDGY Y+LV++DDLS F  ++   +CT+ ++A+ +L     LG P V+++D A HFKN  ++ +   LG   RF+VA S WSNGT ERM  EVVRT +AV+ ER R L +W D + AVQ+ALN+AYRER  +TP+ +M G
Sbjct:    1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREVVRTMKAVLQERRRNLRDWVDLVPAVQWALNTAYRERYASTPYHVMFG 201          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: H3H7B6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7B6_PHYRM)

HSP 1 Score: 189 bits (480), Expect = 1.530e-51
Identity = 127/354 (35.88%), Postives = 184/354 (51.98%), Query Frame = 1
Query:    1 LSKSTSQRLLNWRTFMSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRS--IAVVAPT----DADYSFPSMGEIRDRQDSYTDGKAGLDSPLGSVVRGGNGLYRVDYGGC---PAERFLQVRL-VCAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLGDS-DGYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILERVLVLGTP*VFMNDGAPHFKNETLNLVATKLGASHRFSVAYSSWSNGTVERMNLEVVRTFRAVMNERGRLLSEWPDSIFAVQFALNSAYRERM-GATPFQLMT 1026
            +++  + +L  W   +  F YVI H+PG EN WG+LLSR      GA    E     +R+  +AVV       +AD+ +PS  EIR  Q +     AG  +  G        L     G     P    LQ RL V AH   +GH    AT+  L     W  M  DVT FV +CLHC+ + AG  IPRP GE L  T   EVLHFD+L + +S  G  YVLVL D +S FV L      TS+ +++ +++     G    +++D   HF+N+ +  +   LGA H F+ AY+ W+NGTVE +N EV+++ +A+++ER   + +WP  +  VQ ALN+   +R+ G +P    T
Sbjct:    1 MARYQADKLQRWALALMSFRYVIEHVPGEENAWGDLLSRW-----GAGPPLEATRTAIRAARLAVVERVSPLEEADFVWPSEQEIRAVQQA-----AGAAAHPGVQWNEERQLQMTSTGQVWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPDVTTFVNECLHCMVA-AGGRIPRPFGETLRATRPNEVLHFDFLTMIESTSGVKYVLVLKDGMSGFVELLACTHATSDHASQGLIDWFKRFGVVHQWVSDQGAHFRNQVVERLQRALGAHHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRMHVQDWPAVLPVVQAALNAMPADRLDGRSPLTAFT 343          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: A0A6A3W606_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3W606_9STRA)

HSP 1 Score: 188 bits (478), Expect = 5.430e-50
Identity = 124/355 (34.93%), Postives = 184/355 (51.83%), Query Frame = 1
Query:    1 LSKSTSQRLLNWRTFMSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRSIAV---VAPT-DADYSFPSMGEIRDRQDSYTDGK-------AGLDSPLGSVVRGGNGLYRVDYGGCPAERFLQVRLVCAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLGDSD-GYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILERVLVLGTP*VFMNDGAPHFKNETLNLVATKLGASHRFSVAYSSWSNGTVERMNLEVVRTFRAVMNERGRLLSEWPDSIFAVQFALNSAYRERMGA-TPFQLMT 1026
            L +  + +L  W   +  F YVI H+PG +N WG+LLSR  +   G+  S E+  V V  +AV   V+P  D ++ +P+  EIR  Q+                D+    VVR    ++        A    Q   V AH   +GH     T   L     W  M  DV+ FV  CLHC+ +  G V PRP GE L  T+  EVLHFD+L + + + G  YVLVL D +S FV L    S TS+ + +S+L+     G    +++D   HFKN+ +  ++  LGA+H F+ AY+ W+NGTVE +N EV+++ +A+++ER   + +WP  +  VQ ALN+   +R+G  TP    T
Sbjct:  268 LLRPVADKLQRWSISLMSFRYVIEHVPGEQNVWGDLLSRWGA---GSTASSEQAAVRVTRLAVIERVSPLEDPEFVWPTENEIRTLQELARSADPNDEHDATAYDADRRLVVRADGQVWIPS----TAVEMQQRLCVVAHAGASGHRGAQTTTTALSNLFYWRTMAADVSAFVAGCLHCMVTANGRV-PRPYGETLVATKPNEVLHFDFLTMIEGERGLKYVLVLKDGMSGFVELVACVSATSDQAYQSLLDWFKRFGVVHQWISDQGAHFKNQVMEKLSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFT 614          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: H3H4S7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4S7_PHYRM)

HSP 1 Score: 188 bits (477), Expect = 1.650e-49
Identity = 127/354 (35.88%), Postives = 183/354 (51.69%), Query Frame = 1
Query:    1 LSKSTSQRLLNWRTFMSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRS--IAVVAPT----DADYSFPSMGEIRDRQDSYTDGKAGLDSPLGSVVRGGNGLYRVDYGGC---PAERFLQVRL-VCAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLGDS-DGYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILERVLVLGTP*VFMNDGAPHFKNETLNLVATKLGASHRFSVAYSSWSNGTVERMNLEVVRTFRAVMNERGRLLSEWPDSIFAVQFALNSAYRERM-GATPFQLMT 1026
            +++  + +L  W   +  F YVI H+PG EN WG+LLSR      GA    E     +R+  +AVV       +AD+ +PS  EIR  Q +     AG  +  G        L     G     P    LQ RL V AH   +GH    AT+  L     W  M  DVT FV +CLHC+ + AG  IPRP GE L  T   EVLHFD+L + +S  G  YVLVL D +S FV L      TS+ + + +++     G    +++D   HF+N+ +  +   LGA H F+ AY+ W+NGTVE +N EV+++ +A+++ER   + +WP  +  VQ ALN+   +R+ G +P    T
Sbjct: 1088 MARYQADKLQRWALALMSFRYVIEHVPGEENAWGDLLSRW-----GAGPPLEATRTAIRAARLAVVERVSPLEEADFVWPSEQEIRAVQQA-----AGAAAHPGVQWNEERQLQMTSTGQVWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPDVTTFVNECLHCMVA-AGGRIPRPFGETLRATRPNEVLHFDFLTMIESTSGVKYVLVLKDGMSGFVELLACTHATSDHAYQGLIDWFKRFGVVHQWVSDQGAHFRNQVVERLQRALGAHHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRMHVQDWPAVLPVVQAALNAMPADRLDGRSPLTAFT 1430          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: H3H555_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H555_PHYRM)

HSP 1 Score: 186 bits (473), Expect = 3.740e-49
Identity = 126/354 (35.59%), Postives = 182/354 (51.41%), Query Frame = 1
Query:    1 LSKSTSQRLLNWRTFMSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRS--IAVVAPT----DADYSFPSMGEIRDRQDSYTDGKAGLDSPLGSVVRGGNGLYRVDYGGC---PAERFLQVRL-VCAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKL-GDSDGYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILERVLVLGTP*VFMNDGAPHFKNETLNLVATKLGASHRFSVAYSSWSNGTVERMNLEVVRTFRAVMNERGRLLSEWPDSIFAVQFALNSAYRERM-GATPFQLMT 1026
            +++  + +L  W   +  F YVI H+PG EN WG+LLSR      GA    E     +R+  +AVV       +AD+ +PS  EIR  Q +     AG  +  G        L     G     P    LQ RL V AH   +GH    AT+  L     W  M  DVT FV +CLHC+ + AG  IPRP GE L  T   EVLHFD+L +   + G  YVLVL D +S FV L      TS+ + + +++     G    +++D   HF+N+ +  +   LGA H F+ AY+ W+NGTVE +N EV+++ +A+++ER   + +WP  +  VQ ALN+   +R+ G +P    T
Sbjct:  360 MARYQADKLQRWALALMSFRYVIEHVPGEENAWGDLLSRW-----GAGPPLEATRTAIRAARLAVVERVSPLEEADFVWPSEQEIRAVQQA-----AGAAAHPGVQWNEERQLQMTSTGQVWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPDVTTFVNECLHCMVA-AGGRIPRPFGETLRATRPNEVLHFDFLTMIMSTSGVKYVLVLKDGMSGFVELLACTHATSDHAYQGLIDWFKRFGVVHQWVSDQGAHFRNQVVERLQRALGAHHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRMHVQDWPAVLPVVQAALNAMPADRLDGRSPLTAFT 702          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: A0A6G0RX23_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RX23_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.010e-48
Identity = 121/337 (35.91%), Postives = 177/337 (52.52%), Query Frame = 1
Query:   55 FSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRSIAV---VAPT-DADYSFPSMGEIRDRQDSYTDGK-------AGLDSPLGSVVRGGNGLYRVDYGGCPAERFLQVRLVCAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLGDSD-GYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILERVLVLGTP*VFMNDGAPHFKNETLNLVATKLGASHRFSVAYSSWSNGTVERMNLEVVRTFRAVMNERGRLLSEWPDSIFAVQFALNSAYRERMGA-TPFQLMT 1026
            F YVI H+PG +N WG+LLSR  +   G+  S E+  V V  +AV   V+P  D ++ +P+  EIR  Q+                D+    VVR    ++        A    Q   V AH   +GH     T   L     W  M  DV+ FV  CLHC+ +  G V PRP GE L  T+  EVLHFD+L + + + G  YVLVL D +S FV L    S TS+ + +S+L+     G    +++D   HFKN+ +  ++  LGA+H F+ AY+ W+NGTVE +N EV+++ +A+++ER   + +WP  +  VQ ALN+   +R+G  TP    T
Sbjct:    3 FWYVIEHVPGEQNVWGDLLSRWGA---GSTASSEQAAVRVTRLAVIERVSPLEDPEFVWPTENEIRTLQELARSADPNDEHDATAYDADRRLVVRADGQVWIPS----TAVEMQQRLCVVAHAGASGHRGAQTTTTALSNLFYWRTMAADVSAFVAGCLHCMVTANGRV-PRPYGETLVATKPNEVLHFDFLTMIEGERGLKYVLVLKDGMSGFVELVACVSATSDQAYQSLLDWFKRFGVVHQWISDQGAHFKNQVMEKLSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFT 331          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: A0A6A4G7J8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G7J8_9STRA)

HSP 1 Score: 178 bits (451), Expect = 2.460e-47
Identity = 111/343 (32.36%), Postives = 176/343 (51.31%), Query Frame = 1
Query:    1 LSKSTSQRLLNWRTFMSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRSIAVVAPT----DADYSFPSMGEIRDRQDSYTDGKAGLDSPLGSVVRGGNGLYRVDYGG----CPAERFLQVRLVCAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLGDSDG-YAYVLVLVDDLSLFVSLQLAASCTSEVSARSILERVLVLGTP*VFMNDGAPHFKNETLNLVATKLGASHRFSVAYSSWSNGTVERMNLEVVRTFRAVMNERGRLLSEWPDSIFAVQFALNSAYRERMG 1002
            +++  + +L  W   +  F Y+I H+PG  N WG+LLSR  +   G     E     V  +AVV       D ++ +PS  EI+  QD+  +    L+   G+   G   L  +  G       AE   Q   V AH   +GH     T   L +   W+ +  DV  FV +CLHC+ + +G  IPRP GE L  T+  ++LHFDYL + + DG   YVLVL D +S +V L      T++ + +++++     G    +++D   H +N+ +  +   LGA H F  AY+ W+NGTVE +N E+++  +A+++ER   + +WP  +  VQ ALNS   +R+G
Sbjct:    1 MARYQADKLQRWALSLMSFQYIIEHVPGDVNVWGDLLSRWGA---GQVREDEHEATRVARLAVVERVSPLEDPEFVWPSETEIKAVQDAAREAAQDLE---GAQQTGERELMVMPSGQVWIPADAEDLRQRLCVIAHAGASGHRGAQTTQRALESVFYWKTLAVDVAAFVGECLHCMATASGR-IPRPFGETLVATKPNKILHFDYLSMVEGDGGVKYVLVLKDGMSGYVELVACLQATADTAYQALIDWFKRFGVVHQWVSDQGAHSRNQIVERLQRALGAQHHFVTAYTPWANGTVEVVNREILKCMKALLSERRLAIRDWPALLPVVQAALNSMPADRLG 336          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCX8_9PHAE2.250e-9144.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE2.380e-8744.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE1.060e-8343.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS6_9PHAE4.160e-5849.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
H3H7B6_PHYRM1.530e-5135.88Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3W606_9STRA5.430e-5034.93Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
H3H4S7_PHYRM1.650e-4935.88Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
H3H555_PHYRM3.740e-4935.59Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6G0RX23_9STRA1.010e-4835.91Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A6A4G7J8_9STRA2.460e-4732.36Uncharacterized protein n=2 Tax=Phytophthora rubi ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52291contigH-elongata_contig52291:31..1059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue1.5e-23
Seed eggNOG ortholog164328.Phyra85588
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1029
Cds size702
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52291.12536.1prot_H-elongata_contig52291.12536.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52291 76..777 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930855.6194522-UTR-H-elongata_contig52291:30..751622930855.6194522-UTR-H-elongata_contig52291:30..75Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52291 31..75 +
1691679599.3459454-UTR-H-elongata_contig52291:30..751691679599.3459454-UTR-H-elongata_contig52291:30..75Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52291 31..75 +
1622930855.6619966-UTR-H-elongata_contig52291:777..10591622930855.6619966-UTR-H-elongata_contig52291:777..1059Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52291 778..1059 +
1691679599.3678224-UTR-H-elongata_contig52291:777..10591691679599.3678224-UTR-H-elongata_contig52291:777..1059Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52291 778..1059 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930855.6402342-CDS-H-elongata_contig52291:75..7771622930855.6402342-CDS-H-elongata_contig52291:75..777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52291 76..777 +
1691679599.3579895-CDS-H-elongata_contig52291:75..7771691679599.3579895-CDS-H-elongata_contig52291:75..777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52291 76..777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52291.12536.1

>prot_H-elongata_contig52291.12536.1 ID=prot_H-elongata_contig52291.12536.1|Name=mRNA_H-elongata_contig52291.12536.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp
MSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRSIAVVA
PTDADYSFPSMGEIRDRQDSYTDGKAGLDSPLGSVVRGGNGLYRVDYGGC
PAERFLQVRLVCAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQC
LHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLGDSDGYAYVLVLVD
DLSLFVSLQLAASCTSEVSARSILERVLVLGTP*
back to top

mRNA from alignment at H-elongata_contig52291:31..1059+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52291.12536.1 ID=mRNA_H-elongata_contig52291.12536.1|Name=mRNA_H-elongata_contig52291.12536.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1029bp|location=Sequence derived from alignment at H-elongata_contig52291:31..1059+ (Himanthalia elongata Himel1 dioecious)
CTGTCTAAATCGACGTCTCAACGTCTGCTGAACTGGCGTACTTTCATGAG TGAGTTCTCGTACGTCATTCGTCACATCCCGGGTGCGGAGAATCACTGGG GTAATTTGCTGTCGCGGCTGCGATCTATTAGTGGTGGAGCAGCTGACTCT GGCGAGGAGGTTCCGGTGTGTGTCCGGTCTATTGCTGTGGTTGCACCGAC AGACGCCGATTACTCTTTCCCGAGCATGGGCGAAATTCGGGACCGTCAGG ACAGCTACACTGATGGCAAGGCAGGTTTGGACTCACCGCTTGGAAGTGTG GTGCGCGGTGGAAACGGGCTGTATCGCGTCGATTATGGGGGATGCCCCGC TGAGAGGTTTCTGCAGGTGCGCTTGGTGTGCGCTCATATGCAAGAAGCTG GACACATGGACATTTGTGCTACAATGCACCGGCTTGGGGCGTACTGTGTA TGGGAAGGTATGAAGGAGGATGTGACCGAGTTTGTTCAACAGTGTCTACA CTGTGTGGACTCCCGGGCGGGGAATGTGATCCCCCGTCCGTTGGGTGAAA TACTTCATGAAACGGAGGTCGGAGAAGTTCTTCACTTCGACTATCTTAAA TTGGGCGACAGCGATGGGTATGCGTACGTGCTCGTACTTGTTGATGACTT GAGCTTGTTCGTGTCTTTGCAACTGGCGGCGTCTTGCACAAGTGAAGTTT CTGCAAGAAGTATTCTGGAGCGGGTTTTAGTATTGGGCACTCCCTAGGTG TTCATGAACGATGGAGCACCGCACTTCAAAAATGAGACGTTGAACTTGGT TGCTACGAAACTGGGAGCCTCGCATCGTTTTTCGGTGGCATACTCATCGT GGAGCAATGGTACTGTGGAGCGAATGAACTTGGAGGTGGTTCGGACGTTT CGAGCGGTTATGAATGAAAGGGGACGCCTGCTTTCGGAATGGCCCGACAG CATATTTGCGGTGCAGTTTGCGCTAAACTCAGCCTACCGGGAGCGGATGG GCGCCACTCCGTTTCAGTTGATGACTGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig52291:31..1059+

>mRNA_H-elongata_contig52291.12536.1 ID=mRNA_H-elongata_contig52291.12536.1|Name=mRNA_H-elongata_contig52291.12536.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1404bp|location=Sequence derived from alignment at H-elongata_contig52291:31..1059+ (Himanthalia elongata Himel1 dioecious)
ATGAGTGAGTTCTCGTACGTCATTCGTCACATCCCGGGTGCGGAGAATCA
CTGGGGTAATTTGCTGTCGCGGCTGCGATCTATTAGTGGTGGAGCAGCTG
ACTCTGGCGAGGAGGTTCCGGTGTGTGTCCGGTCTATTGCTGTGGTTGCA
CCGACAGACGCCGATTACTCTTTCCCGAGCATGGGCGAAATTCGGGACCG
TCAGGACAGCTACACTGATGGCAAGGCAGGTTTGGACTCACCGCTTGGAA
GTGTGGTGCGCGGTGGAAACGGGCTGTATCGCGTCGATTATGGGGGATGC
CCCGCTGAGAGGTTTCTGCAGGTGCGCTTGGTGTGCGCTCATATGCAAGA
AGCTGGACACATGGACATTTGTGCTACAATGCACCGGCTTGGGGCGTACT
GTGTATGGGAAGGTATGAAGGAGGATGTGACCGAGTTTGTTCAACAGTGT
CTACACTGTGTGGACTCCCGGGCGGGGAATGTGATCCCCCGTCCGTTGGG
TGAAATACTTCATGAAACGGAGGTCGGAGAAGTTCTTCACTTCGACTATC
TTAAATTGGGCGACAGCGATGGGTATGCGTACGTGCTCGTACTTGTTGAT
GACTTGAGCTTGTTCGTGTCTTTGCAACTGGCGGCGTCTTGCACAAGTGA
AGTTTCTGCAAGAAGTATTCTGGAGCGGGTTTTAGTATTGGGCACTCCCT
AGATGAGTGAGTTCTCGTACGTCATTCGTCACATCCCGGGTGCGGAGAAT
CACTGGGGTAATTTGCTGTCGCGGCTGCGATCTATTAGTGGTGGAGCAGC
TGACTCTGGCGAGGAGGTTCCGGTGTGTGTCCGGTCTATTGCTGTGGTTG
CACCGACAGACGCCGATTACTCTTTCCCGAGCATGGGCGAAATTCGGGAC
CGTCAGGACAGCTACACTGATGGCAAGGCAGGTTTGGACTCACCGCTTGG
AAGTGTGGTGCGCGGTGGAAACGGGCTGTATCGCGTCGATTATGGGGGAT
GCCCCGCTGAGAGGTTTCTGCAGGTGCGCTTGGTGTGCGCTCATATGCAA
GAAGCTGGACACATGGACATTTGTGCTACAATGCACCGGCTTGGGGCGTA
CTGTGTATGGGAAGGTATGAAGGAGGATGTGACCGAGTTTGTTCAACAGT
GTCTACACTGTGTGGACTCCCGGGCGGGGAATGTGATCCCCCGTCCGTTG
GGTGAAATACTTCATGAAACGGAGGTCGGAGAAGTTCTTCACTTCGACTA
TCTTAAATTGGGCGACAGCGATGGGTATGCGTACGTGCTCGTACTTGTTG
ATGACTTGAGCTTGTTCGTGTCTTTGCAACTGGCGGCGTCTTGCACAAGT
GAAGTTTCTGCAAGAAGTATTCTGGAGCGGGTTTTAGTATTGGGCACTCC
CTAG
back to top