prot_H-elongata_contig52291.12536.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52291.12536.1
Unique Nameprot_H-elongata_contig52291.12536.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length234
Homology
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.880e-50
Identity = 106/255 (41.57%), Postives = 141/255 (55.29%), Query Frame = 0
Query:    1 MSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRSIAVVAPTDADYSFPSMGEIRDRQD----SYTDGKAGLDSPLGSVVRGGNGLYRVDYGGCPA------ERFLQVRLV-CAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLG-----------DSDGYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILERVLVLGTP 233
            + ++ Y I+HI G  N WG+LLSR  ++            V  RS AV  P+  D + PS   IR+ Q     S  D  A     LG V     GL+RV   G          R +Q+RL+ CAHM+EAGH  + ATMHRL  YC W  M  DV EFVQQCLHC+DS++G ++PRP GE +H    GEVLHFDYL +G           +SDGY Y+LV++DDLS F  ++   +CT+ ++A+ +L     LG P
Sbjct:  309 LGQYDYTIQHISGERNCWGDLLSRWVNVPA----------VSNRSAAVFMPSTPDCNLPSKNAIREVQQTVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVP 553          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.010e-49
Identity = 106/255 (41.57%), Postives = 141/255 (55.29%), Query Frame = 0
Query:    1 MSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRSIAVVAPTDADYSFPSMGEIRDRQD----SYTDGKAGLDSPLGSVVRGGNGLYRVDYGGCPA------ERFLQVRLV-CAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLG-----------DSDGYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILERVLVLGTP 233
            + ++ Y I+HI G  N WG+LLSR  ++            V  RS AV  P+  D + PS   IR+ Q     S  D  A     LG V     GL+RV   G          R +Q+RL+ CAHM+EAGH  + ATMHRL  YC W  M  DV EFVQQCLHC+DS++G ++PRP GE +H    GEVLHFDYL +G           +SDGY Y+LV++DDLS F  ++   +CT+ ++A+ +L     LG P
Sbjct: 1085 LGQYDYTIQHISGERNCWGDLLSRWVNVPA----------VSNRSAAVFMPSTPDCNLPSKNAIREVQQTVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVP 1329          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.200e-48
Identity = 106/258 (41.09%), Postives = 147/258 (56.98%), Query Frame = 0
Query:    1 MSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRSIAVVAPTDADYSFPSMGEIRDRQDSYTDGKAGLDSP-------LGSVVRGGNGLYRVDYGG-----CPAERF-LQVRL-VCAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLGDS-----------DGYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILERVLVLGTP 233
            + ++ Y IRHI G  N WG+LLSR  S+            V VR+ AV AP++ D + PS   +RD Q +       L  P       +G+      GL+RV   G      P +   LQVRL VCAHM+EAGH    AT+ RL  YC W  M+E VT+FV+QCLHC+DS+AG  +PRPLGE +H T  GEV+HFDYL +G S           +G+ Y+LV++DD+S +V L+   +CT+ ++A+ +L    +LG P
Sbjct: 1184 LGQYDYTIRHISGERNCWGDLLSRWVSVPS----------VSVRAAAVYAPSEPDAAMPSKQVVRDAQQAARSKLGALAGPASSFSTAVGTATLDAEGLFRVGMNGRDVLWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVP 1431          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: H3H7B6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7B6_PHYRM)

HSP 1 Score: 117 bits (294), Expect = 9.000e-27
Identity = 90/236 (38.14%), Postives = 117/236 (49.58%), Query Frame = 0
Query:    1 MSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRS--IAVVAPT----DADYSFPSMGEIRDRQDSYTDGKAGLDSPLGSVVRGGNGLYRVDYGGC---PAERFLQVRL-VCAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLGDS-DGYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILE 225
            +  F YVI H+PG EN WG+LLSR      GA    E     +R+  +AVV       +AD+ +PS  EIR  Q +     AG  +  G        L     G     P    LQ RL V AH   +GH    AT+  L     W  M  DVT FV +CLHC+ + AG  IPRP GE L  T   EVLHFD+L + +S  G  YVLVL D +S FV L      TS+ +++ +++
Sbjct:   16 LMSFRYVIEHVPGEENAWGDLLSRW-----GAGPPLEATRTAIRAARLAVVERVSPLEEADFVWPSEQEIRAVQQA-----AGAAAHPGVQWNEERQLQMTSTGQVWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPDVTTFVNECLHCMVA-AGGRIPRPFGETLRATRPNEVLHFDFLTMIESTSGVKYVLVLKDGMSGFVELLACTHATSDHASQGLID 240          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: H3H4S7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4S7_PHYRM)

HSP 1 Score: 116 bits (291), Expect = 3.570e-26
Identity = 90/236 (38.14%), Postives = 116/236 (49.15%), Query Frame = 0
Query:    1 MSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRS--IAVVAPT----DADYSFPSMGEIRDRQDSYTDGKAGLDSPLGSVVRGGNGLYRVDYGGC---PAERFLQVRL-VCAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLGDS-DGYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILE 225
            +  F YVI H+PG EN WG+LLSR      GA    E     +R+  +AVV       +AD+ +PS  EIR  Q +     AG  +  G        L     G     P    LQ RL V AH   +GH    AT+  L     W  M  DVT FV +CLHC+ + AG  IPRP GE L  T   EVLHFD+L + +S  G  YVLVL D +S FV L      TS+ + + +++
Sbjct: 1103 LMSFRYVIEHVPGEENAWGDLLSRW-----GAGPPLEATRTAIRAARLAVVERVSPLEEADFVWPSEQEIRAVQQA-----AGAAAHPGVQWNEERQLQMTSTGQVWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPDVTTFVNECLHCMVA-AGGRIPRPFGETLRATRPNEVLHFDFLTMIESTSGVKYVLVLKDGMSGFVELLACTHATSDHAYQGLID 1327          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: H3H555_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H555_PHYRM)

HSP 1 Score: 115 bits (287), Expect = 1.120e-25
Identity = 89/236 (37.71%), Postives = 115/236 (48.73%), Query Frame = 0
Query:    1 MSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRS--IAVVAPT----DADYSFPSMGEIRDRQDSYTDGKAGLDSPLGSVVRGGNGLYRVDYGGC---PAERFLQVRL-VCAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKL-GDSDGYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILE 225
            +  F YVI H+PG EN WG+LLSR      GA    E     +R+  +AVV       +AD+ +PS  EIR  Q +     AG  +  G        L     G     P    LQ RL V AH   +GH    AT+  L     W  M  DVT FV +CLHC+ + AG  IPRP GE L  T   EVLHFD+L +   + G  YVLVL D +S FV L      TS+ + + +++
Sbjct:  375 LMSFRYVIEHVPGEENAWGDLLSRW-----GAGPPLEATRTAIRAARLAVVERVSPLEEADFVWPSEQEIRAVQQA-----AGAAAHPGVQWNEERQLQMTSTGQVWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPDVTTFVNECLHCMVA-AGGRIPRPFGETLRATRPNEVLHFDFLTMIMSTSGVKYVLVLKDGMSGFVELLACTHATSDHAYQGLID 599          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: A0A6A3W606_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3W606_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.350e-24
Identity = 84/237 (35.44%), Postives = 116/237 (48.95%), Query Frame = 0
Query:    1 MSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRSIAV---VAPT-DADYSFPSMGEIRDRQDSYTDGK-------AGLDSPLGSVVRGGNGLYRVDYGGCPAERFLQVRLVCAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLGDSD-GYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILE 225
            +  F YVI H+PG +N WG+LLSR  +   G+  S E+  V V  +AV   V+P  D ++ +P+  EIR  Q+                D+    VVR    ++        A    Q   V AH   +GH     T   L     W  M  DV+ FV  CLHC+ +  G V PRP GE L  T+  EVLHFD+L + + + G  YVLVL D +S FV L    S TS+ + +S+L+
Sbjct:  283 LMSFRYVIEHVPGEQNVWGDLLSRWGA---GSTASSEQAAVRVTRLAVIERVSPLEDPEFVWPTENEIRTLQELARSADPNDEHDATAYDADRRLVVRADGQVWIPS----TAVEMQQRLCVVAHAGASGHRGAQTTTTALSNLFYWRTMAADVSAFVAGCLHCMVTANGRV-PRPYGETLVATKPNEVLHFDFLTMIEGERGLKYVLVLKDGMSGFVELVACVSATSDQAYQSLLD 511          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: A0A6A3GEA1_9STRA (Integrase_H2C2 domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GEA1_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.730e-24
Identity = 88/241 (36.51%), Postives = 115/241 (47.72%), Query Frame = 0
Query:    1 MSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRSIAVVAPT-DADYSFPSMGEIRD-RQD------------SYTDGKAGLDSPLGSVVRGGNGLYRVDYGGCPAERFLQVRL-VCAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLK-LGDSDGYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILE 225
            +  F YVI H+PG  N WG+LLSR  +     A+S       +  +  V+P  +A++ +PS GEIR   QD            ++ D +A L SP G V               P    LQ RL V AH   +GH     T   L    VW  M  DV+ FVQ CLHC+ + AG  IPRP GE L  T+  E+LHFD+L  L   DG  YV VL   +S +V L      TS+ +  S L+
Sbjct:   26 LMSFKYVIEHVPGEVNAWGDLLSRWGAGPVLPAESSARRVARLAVVDRVSPLQEAEFVWPSEGEIRTLHQDPQYQEQARAAGVNWDDERALLLSPTGQVWIP------------PDATELQQRLCVIAHAGASGHRGAKTTAAALSEVLVWATMPADVSTFVQGCLHCMVT-AGGKIPRPHGETLVATKPNELLHFDFLSMLKGEDGSKYVFVLKGGMSGYVELVSCIDATSDQAYASRLD 253          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: A0A6A3I3R6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3I3R6_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.470e-24
Identity = 79/230 (34.35%), Postives = 113/230 (49.13%), Query Frame = 0
Query:    1 MSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRSIAVVAPT----DADYSFPSMGEIRDRQDSYTDGKAGLDSPLGSVVRGGNGLYRVDYGGCPAERFLQVRLVCAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLGDSDG-YAYVLVLVDDLSLFVSLQLAASCTSEVSARSILE 225
            +  F YVI H+PG EN WG+LLSR  +   G         V V  +AVV       + ++ +PS  EIR  Q++    +A      G+ +   + L    Y    A    Q   V AH   +GH    AT   L A   W  +  DV  FV  CLHC+ + +G  IPRP GE L  T+  E+LHFDYL + + +G   YVLVL D +S +V L      T++ + R++++
Sbjct:  480 LMSFKYVIEHVPGEENVWGDLLSRWGA---GQVLEAHHGAVRVARLAVVQRVSPLEEPEFVWPSESEIRASQEAA---RASGQIMTGTQLDDEHHLLVTVYIPDDAADLQQRLCVVAHAGASGHRGGRATQQALEAVFYWSSLGADVAAFVNGCLHCMTTASGR-IPRPFGETLVATKPNELLHFDYLTMVEGEGGLKYVLVLKDGMSGYVELVARLQATADTAYRALID 702          
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Match: A0A6G0RX23_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RX23_9STRA)

HSP 1 Score: 110 bits (274), Expect = 4.550e-24
Identity = 84/234 (35.90%), Postives = 115/234 (49.15%), Query Frame = 0
Query:    4 FSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRSIAV---VAPT-DADYSFPSMGEIRDRQDSYTDGK-------AGLDSPLGSVVRGGNGLYRVDYGGCPAERFLQVRLVCAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQCLHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLGDSD-GYAYVLVLVDDLSLFVSLQLAASCTSEVSARSILE 225
            F YVI H+PG +N WG+LLSR  +   G+  S E+  V V  +AV   V+P  D ++ +P+  EIR  Q+                D+    VVR    ++        A    Q   V AH   +GH     T   L     W  M  DV+ FV  CLHC+ +  G V PRP GE L  T+  EVLHFD+L + + + G  YVLVL D +S FV L    S TS+ + +S+L+
Sbjct:    3 FWYVIEHVPGEQNVWGDLLSRWGA---GSTASSEQAAVRVTRLAVIERVSPLEDPEFVWPTENEIRTLQELARSADPNDEHDATAYDADRRLVVRADGQVWIPS----TAVEMQQRLCVVAHAGASGHRGAQTTTTALSNLFYWRTMAADVSAFVAGCLHCMVTANGRV-PRPYGETLVATKPNEVLHFDFLTMIEGERGLKYVLVLKDGMSGFVELVACVSATSDQAYQSLLD 228          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52291.12536.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCX8_9PHAE1.880e-5041.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE1.010e-4941.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE1.200e-4841.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
H3H7B6_PHYRM9.000e-2738.14Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
H3H4S7_PHYRM3.570e-2638.14Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
H3H555_PHYRM1.120e-2537.71Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3W606_9STRA2.350e-2435.44Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6A3GEA1_9STRA2.730e-2436.51Integrase_H2C2 domain-containing protein n=1 Tax=P... [more]
A0A6A3I3R6_9STRA4.470e-2434.35Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
A0A6G0RX23_9STRA4.550e-2435.90Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041588Integrase zinc-binding domainPFAMPF17921Integrase_H2C2coord: 113..154
e-value: 2.5E-9
score: 37.1
NoneNo IPR availableGENE3D1.10.340.70coord: 101..158
e-value: 2.6E-7
score: 32.7
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 2..208
NoneNo IPR availablePANTHERPTHR24559:SF275coord: 2..208

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52291contigH-elongata_contig52291:76..777 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52291.12536.1mRNA_H-elongata_contig52291.12536.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52291 31..1059 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52291.12536.1 ID=prot_H-elongata_contig52291.12536.1|Name=mRNA_H-elongata_contig52291.12536.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp
MSEFSYVIRHIPGAENHWGNLLSRLRSISGGAADSGEEVPVCVRSIAVVA
PTDADYSFPSMGEIRDRQDSYTDGKAGLDSPLGSVVRGGNGLYRVDYGGC
PAERFLQVRLVCAHMQEAGHMDICATMHRLGAYCVWEGMKEDVTEFVQQC
LHCVDSRAGNVIPRPLGEILHETEVGEVLHFDYLKLGDSDGYAYVLVLVD
DLSLFVSLQLAASCTSEVSARSILERVLVLGTP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041588Integrase_H2C2