mRNA_H-elongata_contig52120.12501.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52120.12501.1
Unique NamemRNA_H-elongata_contig52120.12501.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: D8LK22_ECTSI (30S ribosomal protein S1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK22_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.070e-59
Identity = 122/198 (61.62%), Postives = 140/198 (70.71%), Query Frame = 1
Query:    1 QDVAHEDDLPPAPSRPKISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVPGRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRPRSRPRCGPAPA-LASDAYSEEFEYDDTRGRSGNVEGEEDAEWEREEWLKDXXXXXXXXXXXXX-------------------WFFPERGEVIPPPEEDLA 534
            +D   E DLP  P RP IS+ADV+ GAELWGY+ERVTN+GAYVNVGAE PGFLLLKE+PGRP+GL AP VL++NKRLRVYA+EVD E LRIKLTCKRPRS PRCGPA A LASDA +EEF+YDDT      V   ED  W+R++  + XXXXXXXX                        WF+PERG+VIP PE DLA
Sbjct:  240 EDGPREGDLPLPPPRPPISVADVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIPGRPRGLGAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLPRCGPAAAALASDADAEEFDYDDT----ARVRYSEDDGWDRDDEYEXXXXXXXXXMEVEDGMDEFGDDDXXXXXXXGEEWFYPERGQVIPAPEVDLA 433          
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: A0A6H5KCP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP4_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 1.310e-59
Identity = 118/191 (61.78%), Postives = 133/191 (69.63%), Query Frame = 1
Query:    1 QDVAHEDDLPPAPSRPKISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVPGRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRPRSRPRCGPAPA-LASDAYSEEFEYDDTRGRSGNVEGEEDAEWEREEWLKDXXXXXXXXXXXXX------------WFFPERGEVIPPPEEDLA 534
            +D   E DLP  P RP IS+ADV+ GAELWGY+ERVTN+GAYVNVGAE PGFLLLKE+PGRPKGL AP VL++NKRLRVYA+EVD E LRIKLTCKRPRS PRCGPA A LASDA +EEF+YDDT      V   ED  W+R+    D     X     XX            WF+PERG+VIP P  DLA
Sbjct:  385 EDGPREGDLPLPPPRPPISVADVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIPGRPKGLSAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLPRCGPAAAALASDADAEEFDYDDT----ARVRYSEDDGWDRDNEYDDEMEVEXGMNEFXXXXXXXXXDEGEEWFYPERGQVIPAPAVDLA 571          
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: W7TP35_9STRA (30s ribosomal protein s1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TP35_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.380e-10
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   49 KISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVPGRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRPRSRPR 309
            +  + +V    ELWG + +V+N GA+V+VGAE  GFL +   P R +G     V     RLRV+A EVD +R R+KLT +RPRS PR
Sbjct:  262 RTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLPR 348          
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: A0A6U1NXG4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1NXG4_CYCTE)

HSP 1 Score: 64.7 bits (156), Expect = 1.620e-9
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   49 KISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVP--GRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRPRSRPRCGPAPAL 330
            +I + +++   ELWG I+RVT+ G+YV +GA   GFL   + P  G   G      ++  +R+RV+  +VD E+ RIKLT KRPR  P  GP  +L
Sbjct:  121 RIPLKEISVDDELWGIIQRVTDYGSYVELGAAVTGFLHFMDHPYFGEVAGAHPSTYMEAGQRVRVWVSDVDLEKNRIKLTAKRPRDLP--GPRRSL 214          
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: A0A7S2V5P7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P7_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.250e-9
Identity = 31/80 (38.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   55 SMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVPGRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRP 294
            S+ ++    ++WG +ERVT+ GA+V++GAE   FL + + P R K   A     + +RLR+Y KEV+ ++ R+K+T +RP
Sbjct:  241 SLKNLEEDDQVWGVVERVTSFGAFVDIGAEVQAFLHILDYPRRVKAASATKSFHRGQRLRLYVKEVELDKNRVKVTAERP 320          
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: A0A7S2EYN2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EYN2_TRICV)

HSP 1 Score: 64.3 bits (155), Expect = 6.410e-9
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   52 ISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVP--GRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRPRSRP 306
            I ++D+    ELWG IERVT+ GAYV +GAE  GFL   + P  G   G      ++   R+RV+A +VD E+ R++LT  RP   P
Sbjct:  263 IPLSDIDVNDELWGQIERVTDYGAYVELGAEVEGFLHFMDHPEFGLTPGATPDTYMRPGDRVRVWAADVDEEKGRVRLTANRPEGLP 349          
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: A0A7R9ZSJ2_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZSJ2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.330e-8
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 1
Query:   49 KISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVPGRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRP 294
            KI + D+    ELWG ++RVT+ GAYV VGAE  GFL   + P    G      ++   R+RV+  +V+ E+ R+KLT  RP
Sbjct:  287 KIPLLDIEQDDELWGILKRVTDYGAYVEVGAEVDGFLHFMDHPSWDPGAHPMDFMKLGDRVRVWVSDVNREQNRLKLTANRP 368          
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: A0A1E7FWG2_9STRA (S1-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWG2_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.610e-7
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   40 SRPKISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVPGRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRPRSRP 306
            S  K  + +     ELWG ++RVT+ GAYV VGAE  GFL   + P    G      +++ +R+RV+  ++D E+ RI++T  RP++ P
Sbjct:  263 SEEKTPLTEFELDDELWGELKRVTDFGAYVEVGAEVDGFLHFMDHPLWEDGAQPFEFMERGQRVRVWVADLDMEKNRIRVTATRPQNLP 351          
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: A0A1Z5JSD4_FISSO (Small subunit ribosomal protein S1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSD4_FISSO)

HSP 1 Score: 57.8 bits (138), Expect = 1.110e-6
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   49 KISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVP--GRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRP 294
            +I + D+    ELWG  +R+T+ GAYV VGAE   FL   + P  G  KG      ++   R+R++  ++D E+ RIK+T  RP
Sbjct:  226 RIPLVDIQVDDELWGEFKRITDFGAYVEVGAEVDAFLHFMDHPAFGWSKGSHPSEFMKVGDRVRIWVSDLDFEQRRIKVTANRP 309          
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: A0A7S2K1Z0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1Z0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.280e-6
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 1
Query:   52 ISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVP--GRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRPRSRP 306
            I + +V    ELWG I++VT+ GAYV++GA   GFL   + P  G  +G      L+  +R+RV+   VD E  RIKLT  RP S P
Sbjct:  331 IQLDEVDIDDELWGEIKKVTDYGAYVDLGAVVEGFLHFMDHPDYGLHQGAHPSAYLKAGQRIRVWVSNVDEELDRIKLTGNRPSSLP 417          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LK22_ECTSI1.070e-5961.6230S ribosomal protein S1 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KCP4_9PHAE1.310e-5961.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TP35_9STRA1.380e-1045.9830s ribosomal protein s1 n=2 Tax=Monodopsidaceae T... [more]
A0A6U1NXG4_CYCTE1.620e-940.63Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2V5P7_9STRA4.250e-938.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2EYN2_TRICV6.410e-942.53Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7R9ZSJ2_9STRA2.330e-841.46Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
A0A1E7FWG2_9STRA2.610e-737.08S1-domain-containing protein n=1 Tax=Fragilariopsi... [more]
A0A1Z5JSD4_FISSO1.110e-638.10Small subunit ribosomal protein S1 n=2 Tax=Fistuli... [more]
A0A7S2K1Z0_9STRA3.280e-642.53Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52120contigH-elongata_contig52120:152..1012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size537
Cds size537
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930852.2710109-CDS-H-elongata_contig52120:151..3401622930852.2710109-CDS-H-elongata_contig52120:151..340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52120 152..340 +
1691679598.0281467-CDS-H-elongata_contig52120:151..3401691679598.0281467-CDS-H-elongata_contig52120:151..340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52120 152..340 +
1622930852.285454-CDS-H-elongata_contig52120:664..10121622930852.285454-CDS-H-elongata_contig52120:664..1012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52120 665..1012 +
1691679598.0378761-CDS-H-elongata_contig52120:664..10121691679598.0378761-CDS-H-elongata_contig52120:664..1012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52120 665..1012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52120.12501.1prot_H-elongata_contig52120.12501.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52120 152..1012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52120.12501.1

>prot_H-elongata_contig52120.12501.1 ID=prot_H-elongata_contig52120.12501.1|Name=mRNA_H-elongata_contig52120.12501.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
QDVAHEDDLPPAPSRPKISMADVTPGAELWGYIERVTNLGAYVNVGAERP
GFLLLKEVPGRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRPRS
RPRCGPAPALASDAYSEEFEYDDTRGRSGNVEGEEDAEWEREEWLKDDDD
EEDDEEEEGDWFFPERGEVIPPPEEDLA*
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mRNA from alignment at H-elongata_contig52120:152..1012+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52120.12501.1 ID=mRNA_H-elongata_contig52120.12501.1|Name=mRNA_H-elongata_contig52120.12501.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=861bp|location=Sequence derived from alignment at H-elongata_contig52120:152..1012+ (Himanthalia elongata Himel1 dioecious)
CAGGATGTAGCGCATGAGGACGACTTACCACCTGCACCGTCTCGGCCCAA AATATCCATGGCTGATGTGACACCCGGAGCGGAGCTGTGGGGTTACATTG AGCGCGTGACGAACTTGGGGGCGTACGTGAACGTAGGGGCGGAAAGGCCG GGGTTCCTTCTCCTGAAGGAAGTCCCCGGGAGGCCAAAGGTAGGGAGGAC GGGGGTGTCACCACTGCCTAGGCCGACACCGCTTGATGTTTTTTGCCACC GCTGTGAGTTGTCCGTCTTGACGCGCGGATCAGTCAAGGCAGTGACTTAC GCGGTCTCGATAGTGCCCGCACGATCCCGGGTCTTGCATGATTTATGACC GTGGATAGTTTGGGTGCTCTCTATTCTCCCAACAAGGGATGTAAGGCACC ACGAAATGTATCCGTGTCTTCGCTTACATTGCCGCGCGCGAGGCGGGGTT TTCAGAAGCCACACTGTTTTCTCCATTGTGCATATTTTTTGCCGCTCACT CCTGAACCGTCAGGGGCTGGATGCGCCGCATGTGCTGCAGAAGAACAAGC GCCTGCGCGTCTACGCGAAGGAGGTGGATCCGGAGAGGCTACGGATCAAG CTCACGTGCAAGCGACCGCGCAGCCGACCCCGATGCGGGCCCGCCCCGGC GCTGGCGAGCGACGCGTACTCGGAGGAGTTTGAGTATGATGACACAAGGG GCCGCTCGGGGAACGTGGAGGGAGAAGAAGATGCGGAGTGGGAGCGAGAA GAATGGTTGAAGGACGACGATGACGAGGAGGATGACGAGGAAGAGGAGGG AGATTGGTTTTTCCCGGAAAGGGGGGAGGTGATACCGCCCCCAGAGGAAG ACTTGGCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig52120:152..1012+

>mRNA_H-elongata_contig52120.12501.1 ID=mRNA_H-elongata_contig52120.12501.1|Name=mRNA_H-elongata_contig52120.12501.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig52120:152..1012+ (Himanthalia elongata Himel1 dioecious)
CAGGATGTAGCGCATGAGGACGACTTACCACCTGCACCGTCTCGGCCCAA
AATATCCATGGCTGATGTGACACCCGGAGCGGAGCTGTGGGGTTACATTG
AGCGCGTGACGAACTTGGGGGCGTACGTGAACGTAGGGGCGGAAAGGCCG
GGGTTCCTTCTCCTGAAGGAAGTCCCCGGGAGGCCAAAGCAGGATGTAGC
GCATGAGGACGACTTACCACCTGCACCGTCTCGGCCCAAAATATCCATGG
CTGATGTGACACCCGGAGCGGAGCTGTGGGGTTACATTGAGCGCGTGACG
AACTTGGGGGCGTACGTGAACGTAGGGGCGGAAAGGCCGGGGTTCCTTCT
CCTGAAGGAAGTCCCCGGGAGGCCAAAGGGGCTGGATGCGCCGCATGTGC
TGCAGAAGAACAAGCGCCTGCGCGTCTACGCGAAGGAGGTGGATCCGGAG
AGGCTACGGATCAAGCTCACGTGCAAGCGACCGCGCAGCCGACCCCGATG
CGGGCCCGCCCCGGCGCTGGCGAGCGACGCGTACTCGGAGGAGTTTGAGT
ATGATGACACAAGGGGCCGCTCGGGGAACGTGGAGGGAGAAGAAGATGCG
GAGTGGGAGCGAGAAGAATGGTTGAAGGACGACGATGACGAGGAGGATGA
CGAGGAAGAGGAGGGAGATTGGTTTTTCCCGGAAAGGGGGGAGGTGATAC
CGCCCCCAGAGGAAGACTTGGCGTAAGGGCTGGATGCGCCGCATGTGCTG
CAGAAGAACAAGCGCCTGCGCGTCTACGCGAAGGAGGTGGATCCGGAGAG
GCTACGGATCAAGCTCACGTGCAAGCGACCGCGCAGCCGACCCCGATGCG
GGCCCGCCCCGGCGCTGGCGAGCGACGCGTACTCGGAGGAGTTTGAGTAT
GATGACACAAGGGGCCGCTCGGGGAACGTGGAGGGAGAAGAAGATGCGGA
GTGGGAGCGAGAAGAATGGTTGAAGGACGACGATGACGAGGAGGATGACG
AGGAAGAGGAGGGAGATTGGTTTTTCCCGGAAAGGGGGGAGGTGATACCG
CCCCCAGAGGAAGACTTGGCGTAA
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