mRNA_H-elongata_contig52120.12501.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: D8LK22_ECTSI (30S ribosomal protein S1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK22_ECTSI) HSP 1 Score: 201 bits (510), Expect = 1.070e-59 Identity = 122/198 (61.62%), Postives = 140/198 (70.71%), Query Frame = 1
Query: 1 QDVAHEDDLPPAPSRPKISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVPGRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRPRSRPRCGPAPA-LASDAYSEEFEYDDTRGRSGNVEGEEDAEWEREEWLKDXXXXXXXXXXXXX-------------------WFFPERGEVIPPPEEDLA 534
+D E DLP P RP IS+ADV+ GAELWGY+ERVTN+GAYVNVGAE PGFLLLKE+PGRP+GL AP VL++NKRLRVYA+EVD E LRIKLTCKRPRS PRCGPA A LASDA +EEF+YDDT V ED W+R++ + XXXXXXXX WF+PERG+VIP PE DLA
Sbjct: 240 EDGPREGDLPLPPPRPPISVADVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIPGRPRGLGAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLPRCGPAAAALASDADAEEFDYDDT----ARVRYSEDDGWDRDDEYEXXXXXXXXXMEVEDGMDEFGDDDXXXXXXXGEEWFYPERGQVIPAPEVDLA 433
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: A0A6H5KCP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP4_9PHAE) HSP 1 Score: 204 bits (518), Expect = 1.310e-59 Identity = 118/191 (61.78%), Postives = 133/191 (69.63%), Query Frame = 1
Query: 1 QDVAHEDDLPPAPSRPKISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVPGRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRPRSRPRCGPAPA-LASDAYSEEFEYDDTRGRSGNVEGEEDAEWEREEWLKDXXXXXXXXXXXXX------------WFFPERGEVIPPPEEDLA 534
+D E DLP P RP IS+ADV+ GAELWGY+ERVTN+GAYVNVGAE PGFLLLKE+PGRPKGL AP VL++NKRLRVYA+EVD E LRIKLTCKRPRS PRCGPA A LASDA +EEF+YDDT V ED W+R+ D X XX WF+PERG+VIP P DLA
Sbjct: 385 EDGPREGDLPLPPPRPPISVADVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIPGRPKGLSAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLPRCGPAAAALASDADAEEFDYDDT----ARVRYSEDDGWDRDNEYDDEMEVEXGMNEFXXXXXXXXXDEGEEWFYPERGQVIPAPAVDLA 571
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: W7TP35_9STRA (30s ribosomal protein s1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TP35_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 1.380e-10 Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 1
Query: 49 KISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVPGRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRPRSRPR 309
+ + +V ELWG + +V+N GA+V+VGAE GFL + P R +G V RLRV+A EVD +R R+KLT +RPRS PR
Sbjct: 262 RTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLPR 348
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: A0A6U1NXG4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1NXG4_CYCTE) HSP 1 Score: 64.7 bits (156), Expect = 1.620e-9 Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 1
Query: 49 KISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVP--GRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRPRSRPRCGPAPAL 330
+I + +++ ELWG I+RVT+ G+YV +GA GFL + P G G ++ +R+RV+ +VD E+ RIKLT KRPR P GP +L
Sbjct: 121 RIPLKEISVDDELWGIIQRVTDYGSYVELGAAVTGFLHFMDHPYFGEVAGAHPSTYMEAGQRVRVWVSDVDLEKNRIKLTAKRPRDLP--GPRRSL 214
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: A0A7S2V5P7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P7_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 4.250e-9 Identity = 31/80 (38.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query: 55 SMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVPGRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRP 294
S+ ++ ++WG +ERVT+ GA+V++GAE FL + + P R K A + +RLR+Y KEV+ ++ R+K+T +RP
Sbjct: 241 SLKNLEEDDQVWGVVERVTSFGAFVDIGAEVQAFLHILDYPRRVKAASATKSFHRGQRLRLYVKEVELDKNRVKVTAERP 320
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: A0A7S2EYN2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EYN2_TRICV) HSP 1 Score: 64.3 bits (155), Expect = 6.410e-9 Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 1
Query: 52 ISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVP--GRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRPRSRP 306
I ++D+ ELWG IERVT+ GAYV +GAE GFL + P G G ++ R+RV+A +VD E+ R++LT RP P
Sbjct: 263 IPLSDIDVNDELWGQIERVTDYGAYVELGAEVEGFLHFMDHPEFGLTPGATPDTYMRPGDRVRVWAADVDEEKGRVRLTANRPEGLP 349
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: A0A7R9ZSJ2_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZSJ2_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 2.330e-8 Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 1
Query: 49 KISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVPGRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRP 294
KI + D+ ELWG ++RVT+ GAYV VGAE GFL + P G ++ R+RV+ +V+ E+ R+KLT RP
Sbjct: 287 KIPLLDIEQDDELWGILKRVTDYGAYVEVGAEVDGFLHFMDHPSWDPGAHPMDFMKLGDRVRVWVSDVNREQNRLKLTANRP 368
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: A0A1E7FWG2_9STRA (S1-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWG2_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 2.610e-7 Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 1
Query: 40 SRPKISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVPGRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRPRSRP 306
S K + + ELWG ++RVT+ GAYV VGAE GFL + P G +++ +R+RV+ ++D E+ RI++T RP++ P
Sbjct: 263 SEEKTPLTEFELDDELWGELKRVTDFGAYVEVGAEVDGFLHFMDHPLWEDGAQPFEFMERGQRVRVWVADLDMEKNRIRVTATRPQNLP 351
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: A0A1Z5JSD4_FISSO (Small subunit ribosomal protein S1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSD4_FISSO) HSP 1 Score: 57.8 bits (138), Expect = 1.110e-6 Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1
Query: 49 KISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVP--GRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRP 294
+I + D+ ELWG +R+T+ GAYV VGAE FL + P G KG ++ R+R++ ++D E+ RIK+T RP
Sbjct: 226 RIPLVDIQVDDELWGEFKRITDFGAYVEVGAEVDAFLHFMDHPAFGWSKGSHPSEFMKVGDRVRIWVSDLDFEQRRIKVTANRP 309
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Match: A0A7S2K1Z0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1Z0_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 3.280e-6 Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 52 ISMADVTPGAELWGYIERVTNLGAYVNVGAERPGFLLLKEVP--GRPKGLDAPHVLQKNKRLRVYAKEVDPERLRIKLTCKRPRSRP 306
I + +V ELWG I++VT+ GAYV++GA GFL + P G +G L+ +R+RV+ VD E RIKLT RP S P
Sbjct: 331 IQLDEVDIDDELWGEIKKVTDYGAYVDLGAVVEGFLHFMDHPDYGLHQGAHPSAYLKAGQRIRVWVSNVDEELDRIKLTGNRPSSLP 417 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52120.12501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52120.12501.1 >prot_H-elongata_contig52120.12501.1 ID=prot_H-elongata_contig52120.12501.1|Name=mRNA_H-elongata_contig52120.12501.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp QDVAHEDDLPPAPSRPKISMADVTPGAELWGYIERVTNLGAYVNVGAERPback to top mRNA from alignment at H-elongata_contig52120:152..1012+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52120.12501.1 ID=mRNA_H-elongata_contig52120.12501.1|Name=mRNA_H-elongata_contig52120.12501.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=861bp|location=Sequence derived from alignment at H-elongata_contig52120:152..1012+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52120:152..1012+ >mRNA_H-elongata_contig52120.12501.1 ID=mRNA_H-elongata_contig52120.12501.1|Name=mRNA_H-elongata_contig52120.12501.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig52120:152..1012+ (Himanthalia elongata Himel1 dioecious)back to top |