mRNA_H-elongata_contig51803.12458.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51803.12458.1
Unique NamemRNA_H-elongata_contig51803.12458.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: D7G250_ECTSI (AAA_23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G250_ECTSI)

HSP 1 Score: 340 bits (871), Expect = 1.710e-113
Identity = 170/207 (82.13%), Postives = 185/207 (89.37%), Query Frame = 1
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQEDA 621
            MASI+KLSIRGIRSFSHER        Q+IEFY PLTMIVGANGCGKTTIIECLKYACTG+LPPGARNGQSFVHDPK S  +++KANIKLRF+ RD  + VVIRSFQLTQK+ TLQFKALDGVIRT++++G SVSI HKCTE+DKHIP RLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFES+RYTKALD IKKTKQE A
Sbjct:    1 MASIHKLSIRGIRSFSHER-------EQVIEFYTPLTMIVGANGCGKTTIIECLKYACTGALPPGARNGQSFVHDPKVSGTNEVKANIKLRFSARDKTVGVVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYA 200          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: H3GA74_PHYRM (AAA_23 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GA74_PHYRM)

HSP 1 Score: 264 bits (675), Expect = 7.130e-87
Identity = 129/204 (63.24%), Postives = 162/204 (79.41%), Query Frame = 1
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQ 612
            M+SI KLSIRGIRSFS  R        QIIEFY PLT+++G NGCGKTT+IECLK ACTG LPPGAR+GQS +HDPK +  +++KA+I+LRF  R G+  VV R++Q+ Q K  L FKALDGVIR  ++ G  VS+ HKC ELD+HIP  LGVSKAILE+V+FCHQED++WPL+EGA +KK+FD+IFES+RYTKAL+ I+K K+
Sbjct:    1 MSSIEKLSIRGIRSFSPNR-------EQIIEFYHPLTVLLGDNGCGKTTVIECLKLACTGGLPPGARSGQSLIHDPKIAGTNEVKASIRLRFRNRAGKAMVVQRTYQVRQTKKNLVFKALDGVIRVVNELGEKVSLNHKCGELDQHIPDMLGVSKAILESVIFCHQEDSNWPLREGAELKKRFDNIFESARYTKALEAIRKLKK 197          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A1E7F3C8_9STRA (AAA_23 domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3C8_9STRA)

HSP 1 Score: 263 bits (671), Expect = 1.750e-86
Identity = 131/205 (63.90%), Postives = 160/205 (78.05%), Query Frame = 1
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQE 615
            MASINKLS+RGIRSFS E A       Q++EFY PLT+IVG   CGKTTIIE LK+A  G+LPPG   GQ+FVHDPK+   + +KAN+KLRF    G+  V++RS ++TQKK T+ FK LDG +RT ++ G  ++++HKCTELD+ IP  LGVSKAILENVVFCHQEDASWPLQEGAV+KKKFDDIF+S+RYTKALD   K K+E
Sbjct:    1 MASINKLSVRGIRSFSPEDA------EQVLEFYMPLTVIVGE--CGKTTIIEALKFAVCGALPPGKNAGQAFVHDPKSIGSTSVKANLKLRFTAHGGKSMVIVRSMEVTQKKTTMTFKQLDGNLRTVNNTGERIAMSHKCTELDRQIPLMLGVSKAILENVVFCHQEDASWPLQEGAVLKKKFDDIFDSTRYTKALDVFSKAKKE 197          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A2P4XQ47_9STRA (DNA repair protein RAD50 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XQ47_9STRA)

HSP 1 Score: 263 bits (672), Expect = 1.150e-84
Identity = 127/204 (62.25%), Postives = 162/204 (79.41%), Query Frame = 1
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQ 612
            M+SI KLSIRGIRSFS  R        +I+EFY PLT+++G NGCGKTT+IECLK ACTG LPPGAR+G S +HDPK +  +++KA+I+LRF  R G+  VV R++Q+ Q K  LQFKALDGVIR  ++ G  VS+ HKC ELD+HIP  LGVSKAILE+V+FCHQED++WPL+EGA +KK+FD+IFES+RYTKAL+ I+K K+
Sbjct:    1 MSSIEKLSIRGIRSFSPNR-------EEILEFYHPLTVLLGDNGCGKTTVIECLKLACTGGLPPGARSGHSLIHDPKIAGTNEVKASIRLRFRNRAGKAMVVNRTYQVRQTKKALQFKALDGVIRVVNELGEKVSLNHKCGELDQHIPDMLGVSKAILESVIFCHQEDSNWPLREGAELKKRFDNIFESARYTKALEAIRKLKK 197          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A835YS38_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS38_9STRA)

HSP 1 Score: 258 bits (658), Expect = 3.230e-84
Identity = 131/206 (63.59%), Postives = 160/206 (77.67%), Query Frame = 1
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITH-KCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQE 615
            M+ + KLSIRGIRSF  +         QIIEFY PLTMIVG+NGCGKTTIIECL+YA TG LPP +RNGQ+FVHDPK S  +++KA IKLR         VV+RS QLTQKK T+QFKALDGV++  +++G + S T  KCT+LDK +P  + VS+AILE+V+FCHQE++SWPLQEGAV+KKKFDDIFES+RYTKALD IK T+ E
Sbjct:    1 MSVVKKLSIRGIRSFGPDT-------DQIIEFYMPLTMIVGSNGCGKTTIIECLRYATTGILPPNSRNGQTFVHDPKMSNTTEVKAQIKLRLQRGVDMPIVVVRSLQLTQKKTTMQFKALDGVLKYGNNDGGNTSSTGVKCTDLDKQLPTLMRVSRAILESVIFCHQEESSWPLQEGAVLKKKFDDIFESARYTKALDVIKATRVE 199          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A7S4KCM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCM0_9STRA)

HSP 1 Score: 258 bits (659), Expect = 6.350e-82
Identity = 127/208 (61.06%), Postives = 164/208 (78.85%), Query Frame = 1
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDN-GASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQEDA 621
            MASI+KLS+RG+R+FS +         Q+I FY+PLT+IVG NGCGKTTIIE L+YA  G+LPPG R+GQ+FVHDPK++  + +KANIKLRF  R G   VV+RS +LTQKK T+QFKALDG++RT D N G  V+++HKC ELD+ IP  +GVSK ILE+VVF HQED+SWPLQ+ A +K+KFDDIF+S+RY KAL+ I+K++ E A
Sbjct:    1 MASISKLSVRGVRAFSPDDE------EQVISFYSPLTVIVGNNGCGKTTIIESLRYAVAGTLPPGTRSGQAFVHDPKSAGQTSVKANIKLRFNNRAGNSMVVVRSMELTQKKTTMQFKALDGILRTNDPNTGERVALSHKCGELDRQIPTLMGVSKPILEHVVFTHQEDSSWPLQDAASLKRKFDDIFDSTRYAKALEAIRKSRLEYA 202          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: F0Y226_AURAN (AAA_23 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y226_AURAN)

HSP 1 Score: 249 bits (637), Expect = 3.050e-81
Identity = 123/201 (61.19%), Postives = 153/201 (76.12%), Query Frame = 1
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKK 603
            MA I KL+IRGIR+FS ER        + IEF  PLTMIVGANGCGKTT+IE   Y  TG  PPG+ +G++FVHDPK S ++++KA +KLRF    G+  VV+RS QLTQ+K T  FK +DGVIR  D +G   S THKC ELDK +P  +GVSKA+LE+V+FCHQE++SWPLQEGAV+KKKFDDIFES+RY+KALD ++K
Sbjct:    1 MACIEKLAIRGIRAFSPER-------EEAIEFQTPLTMIVGANGCGKTTVIE---YGTTGCAPPGSNSGRAFVHDPKVSGVTEVKAQLKLRFKNYAGQRMVVVRSMQLTQRKTTATFKQMDGVIRANDASGERTSYTHKCGELDKTVPMLIGVSKAVLESVIFCHQEESSWPLQEGAVLKKKFDDIFESARYSKALDELRK 191          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A7S2KC82_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KC82_9STRA)

HSP 1 Score: 249 bits (637), Expect = 3.980e-81
Identity = 129/208 (62.02%), Postives = 164/208 (78.85%), Query Frame = 1
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPP--GARN-GQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDN-GASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQ 612
            MASI+KLSIRG+RSFS +         Q+I F  PLT+IVG NGCGKTTIIE LKYA TGSLPP  G+++ GQ+FVHDPK+   + +KANIKLRF  R G   VV+RS +LTQKK TL FKALDG++R+ D   G  VS++H+C ELD+ IPQ +GVSKAILE+VVFCHQED++WPL+EG+ +KK+FDDIF+S+RY KAL+ I+KT++
Sbjct:   12 MASISKLSIRGVRSFSPDGD------EQVIAFCFPLTIIVGQNGCGKTTIIESLKYAVTGSLPPAQGSKSSGQAFVHDPKSYGSTNVKANIKLRFTNRAGTSMVVVRSMELTQKKTTLTFKALDGILRSTDPTTGERVSMSHRCGELDRQIPQLMGVSKAILEHVVFCHQEDSNWPLREGSELKKRFDDIFDSTRYAKALEAIQKTRK 213          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A662WHK9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHK9_9STRA)

HSP 1 Score: 271 bits (692), Expect = 1.300e-80
Identity = 130/204 (63.73%), Postives = 167/204 (81.86%), Query Frame = 1
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQ 612
            M+SI KLSIRGIRSFS  R        ++IEFY PLT+I+G NGCGKTT+IECLK AC+GSLPPGAR+GQSFVHDPK +  +++KA+++LRF  R G+  VV R++Q+ Q K ++QFKALDGVIR  ++ G  VS+ HKC ELD+HIP  +GVSKAIL++V+FCHQE+A+WPLQEGAV+KK+FDDIFES+RYTKAL+ I+K K+
Sbjct:    1 MSSIEKLSIRGIRSFSPNR-------EEVIEFYHPLTVILGDNGCGKTTVIECLKVACSGSLPPGARSGQSFVHDPKIAGTNEVKASVRLRFRNRAGKAMVVQRTYQVRQLKASVQFKALDGVIRVVNELGEKVSMGHKCGELDRHIPDMMGVSKAILDSVIFCHQEEANWPLQEGAVLKKRFDDIFESARYTKALEAIRKLKK 197          
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A7S1BNQ6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNQ6_9STRA)

HSP 1 Score: 245 bits (626), Expect = 5.810e-80
Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 1
Query:    1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESS 570
            MAS+NKLSIRGIRSFS +       + Q+I F  PLT+IVG NGCGKTTIIE LKYA TGSLPPG ++GQ+FV+DP++   S +KA+IKLRFA R G+  V IRS ++TQ K T+ FKALDG+IRT D+NG  VS++H+C+ELD+ +P  LGVS+ +LE+VVFCHQED+SWPL EG+V+KK+FDDIF+S+
Sbjct:    1 MASLNKLSIRGIRSFSPDD------VEQVISFGYPLTIIVGDNGCGKTTIIESLKYAVTGSLPPGNKSGQAFVNDPRSCGRSNVKASIKLRFANRAGKTMVCIRSVEVTQTKKTMSFKALDGIIRTTDENGQRVSLSHRCSELDRQVPALLGVSRPVLEHVVFCHQEDSSWPLMEGSVLKKRFDDIFDST 184          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G250_ECTSI1.710e-11382.13AAA_23 domain-containing protein n=1 Tax=Ectocarpu... [more]
H3GA74_PHYRM7.130e-8763.24AAA_23 domain-containing protein n=1 Tax=Phytophth... [more]
A0A1E7F3C8_9STRA1.750e-8663.90AAA_23 domain-containing protein (Fragment) n=1 Ta... [more]
A0A2P4XQ47_9STRA1.150e-8462.25DNA repair protein RAD50 (Fragment) n=1 Tax=Phytop... [more]
A0A835YS38_9STRA3.230e-8463.59AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S4KCM0_9STRA6.350e-8261.06Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
F0Y226_AURAN3.050e-8161.19AAA_23 domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S2KC82_9STRA3.980e-8162.02Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A662WHK9_9STRA1.300e-8063.73Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A7S1BNQ6_9STRA5.810e-8062.63Hypothetical protein (Fragment) n=2 Tax=Corethron ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51803contigH-elongata_contig51803:5..3215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score340.9
Seed ortholog evalue4.2e-91
Seed eggNOG ortholog2880.D7G250
Preferred nameRAD50
KEGG koko:K10866
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000075,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000706,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000729,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003691,GO:0003697,GO:0003824,GO:0004003,GO:0004017,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006278,GO:0006281,GO:0006284,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007346,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009165,GO:0009892,GO:0009987,GO:0010520,GO:0010564,GO:0010605,GO:0010705,GO:0010833,GO:0016043,GO:0016233,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016776,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019205,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0022402,GO:0022414,GO:0023052,GO:0030554,GO:0030674,GO:0030870,GO:0031297,GO:0031323,GO:0031324,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032074,GO:0032076,GO:0032078,GO:0032200,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035639,GO:0035753,GO:0035825,GO:0035861,GO:0036094,GO:0040020,GO:0042138,GO:0042162,GO:0042592,GO:0042623,GO:0042769,GO:0042770,GO:0043047,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043570,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044786,GO:0045005,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0046940,GO:0048285,GO:0048519,GO:0048523,GO:0050145,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051336,GO:0051346,GO:0051445,GO:0051606,GO:0051716,GO:0051726,GO:0051783,GO:0051880,GO:0055086,GO:0060090,GO:0060249,GO:0060255,GO:0060631,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0072395,GO:0072401,GO:0072422,GO:0080090,GO:0090304,GO:0090305,GO:0090407,GO:0090734,GO:0097159,GO:0097367,GO:0097551,GO:0097552,GO:0098687,GO:0098847,GO:0110025,GO:0140013,GO:0140097,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1903211,GO:1990426,GO:1990505,GO:1990898,GO:1990918,GO:2000241
EggNOG free text desc.G-quadruplex DNA binding
EggNOG OGsCOG0419@1,KOG0962@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-01_009240.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons6
Model size624
Cds size624
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51803.12458.1prot_H-elongata_contig51803.12458.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51803 5..3215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930847.3915079-CDS-H-elongata_contig51803:4..1901622930847.3915079-CDS-H-elongata_contig51803:4..190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51803 5..190 -
1691679595.9045696-CDS-H-elongata_contig51803:4..1901691679595.9045696-CDS-H-elongata_contig51803:4..190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51803 5..190 -
1622930847.4139695-CDS-H-elongata_contig51803:395..4591622930847.4139695-CDS-H-elongata_contig51803:395..459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51803 396..459 -
1691679595.914635-CDS-H-elongata_contig51803:395..4591691679595.914635-CDS-H-elongata_contig51803:395..459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51803 396..459 -
1622930847.4338176-CDS-H-elongata_contig51803:697..7771622930847.4338176-CDS-H-elongata_contig51803:697..777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51803 698..777 -
1691679595.927614-CDS-H-elongata_contig51803:697..7771691679595.927614-CDS-H-elongata_contig51803:697..777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51803 698..777 -
1622930847.454006-CDS-H-elongata_contig51803:1324..13681622930847.454006-CDS-H-elongata_contig51803:1324..1368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51803 1325..1368 -
1691679595.9398856-CDS-H-elongata_contig51803:1324..13681691679595.9398856-CDS-H-elongata_contig51803:1324..1368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51803 1325..1368 -
1622930847.4721332-CDS-H-elongata_contig51803:1723..19181622930847.4721332-CDS-H-elongata_contig51803:1723..1918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51803 1724..1918 -
1691679595.9574823-CDS-H-elongata_contig51803:1723..19181691679595.9574823-CDS-H-elongata_contig51803:1723..1918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51803 1724..1918 -
1622930847.4858658-CDS-H-elongata_contig51803:3160..32151622930847.4858658-CDS-H-elongata_contig51803:3160..3215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51803 3161..3215 -
1691679595.9709399-CDS-H-elongata_contig51803:3160..32151691679595.9709399-CDS-H-elongata_contig51803:3160..3215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51803 3161..3215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51803.12458.1

>prot_H-elongata_contig51803.12458.1 ID=prot_H-elongata_contig51803.12458.1|Name=mRNA_H-elongata_contig51803.12458.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp
MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTI
IECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMS
VVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQR
LGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIK
KTKQEDAG
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mRNA from alignment at H-elongata_contig51803:5..3215-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51803.12458.1 ID=mRNA_H-elongata_contig51803.12458.1|Name=mRNA_H-elongata_contig51803.12458.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3211bp|location=Sequence derived from alignment at H-elongata_contig51803:5..3215- (Himanthalia elongata Himel1 dioecious)
ATGGCTTCCATCAACAAACTGTCCATCCGCGGCATTCGAAGCTTCAGTCA TGAACGTGACCAGGCAAGGCGGCGTGCCTCCAAGTTTTATATCGCAGGAA CCAGAGTGGCTAACGATGCTACTACCATAGACTAGGAGATGAAATAATCT CGGAGAGGAGCCACAAATCCTCAAGTTTCAATTTTTTTTTTTTTTTTCAA CCAACTAATGTTGTCATATTCCATAGGATGTTCATAAAGTCCGCGAAACA TGCCCCCGCTCCGCGCTTCGCCCCCCACGAAATTGCTCGTAAATCTCACA ATTCTAAGCATAAATAAACATATGAACTAATTCAAACCCTCCCAACATCA TCTTACGTAATGATCTTTTTGTTCGTGTGTCCATCCAACTGATGGAGTGT AAGTGGGCAGCCCCACGGGGACCTCTCCCCGTTACAAGAATTGTTTGACC AAAAACCAACTTGTGCCATGCAGCGCATTGCTTTGTGGAATACGTTTGTC CAGTACTGCTGCTCGTCCCTTTCGTCGAAACGTTTTTCGAACCTAATAAA TTTGGGATTTATCAGATCTTTATTATTAGAAAAACCTTAAACTCATTCCA ACCCTCCGAACATCCACGCCTTCATTATTATAAGAAACATATGAACTCAT TAAGACCCTCATCCACGCTTTCTTACAACCATGAGAGGTGTAGTTTAGGG GCCAACTATCGTCAGGTCTGAATGTGGACATTAATACATTTAAGAACAAA ATCGTCATATATGATTATTCGTGTTCCTCGGTTGTAATTTTATCGGGTCA ACGGTTAATATATATATATATGTTACATATATATGTGTGTGTGTGTATTT ATTAAATTACACATAACTGCGCAATCTGGCCCTGTCGTCCTAGTCATTCT ATACCACTCGTATTGATCCTCCTAGGGGGGGAACAATGATAGTTATCCCG AAAACAATGTGTGTATGTGTGTGTGTGTGTGTGTGTGTTTTATAAATGAT ACCGCGTGCGGCAGACGAATGCGGTCTACATGATGCACGTGCATCTCTTG CGGCGTCTACGATGATGAACCACCCGCACAAAAGGCGCTTATTTTGATTC CATCATGTTAAGCATGTGATTCTGTGTATCAATTCCAACGCGTCAAATCA TGGCTGGCGTGTGAAGAGAGTCGGTACAAAAGCCAACTCGAAAGGCTATT TTATCACCGAACGCTGGACCATAAATATACTCCAGCCGCCAATACTCCAC CTGTGTGAGAGCGTTTTTTCGTCGATCGCATTCGCGGAGGGTTTCAGGTG CTCTGCTGTTGTCTATGCTTTCGCAGATCATCGAGTTTTACGCACCGCTC ACGATGATCGTGGGGGCGAACGGATGTGGTAAAACGACCATCATCGAATG CCTCAAGTACGCGTGCACTGGGTCGCTTCCGCCGGGCGCTCGAAACGGAC AATCCTTCGTCCACGACCCCAAGGCGAGCAGGCTCTCGCAAAGTTTTTCG CCATAGCCAGCGTACAGCTCACTTATTTGGAGTTGCGCGGTGCCCCCCGA CCCGCCCTCGACTCTCGGTCTGCACAACGACGCTTGTCACGCGGTCGCGG CACATATAACAAGTGATCTCCGCGCAGGTCGTCGATGTTGAACATTTTCA ATCGAGCAAGGGCTTCGTCCAAGAACCCAAGACTGAAGATGCATAAATCG GCTTAACTTCCCTTCTACAAGCCTTACGCTGGTTCTCGCTCATGCGGTCA GTCAGCACTTGGTAAACAATACCGGCTTCCGTCGGCTTACCATGACCAGA GTGCCGTGCTTGATTATTCGGAACACAGGTATCAGAAACGAGCGAAGTCA AGGCTAACATCAAGCTGCGTTTCGCTGGACGGGACGGCAGGGTGAGCAGG ACATCCATGATATTATTGTAATGCGTACCGGAAGTCTTTCACAGACTACT GGAGTCACTCTCACCGTCTCGCTCCCAATTTATGAATCGATTTGCATTCC GTAGTTGAAGGACATATATACAAGTACCATACGTAACAAAACTGGCACGT ATTTTCGAAAAGTGCATTGGCAAGGTTTTTGCATTCTCCAAATTCGCGGG AGTATTAGCTTACGCTGCCTTCACACTTAGCGAAAAAATCGAGCATGTGC ACCAATCAATTCCCGCGTATGGATTGAAACCCATCGATCCATGATGTCCT TGTCTTGAACTGTCTTGTAGAGACGAAATCACTTCGGAGTCAGCAGCGAC GGCCGTCTACGAGGTGCCCTGACTATCAACGCTGTGCGTGGGTGTGAAGC TCCCTCAACCAGAGCTGCGCGCATGTTGGTTGCCTCGTATGTTTGGGATA TTCACGAGATATCGAATCTTTATATTGATCTACTTTTTCGCTTCTCGTTC TGTGGCCGACGTCTCTTTTCTCGGCATACCGTTCCCAGATGAGCGTTGTC ATTCGTTCTTTCCAGCTCACTCAAAAAAAGGTCACCCTTCAGTTCAAGGC CCTCGATGGCGTCATTAGGTGCGCTCGTGATAATGCCTCCATCCAACTGT AAAATATATTTACTGCAGGCGTGTGGCTATTCGTAAGGAGGGGGAAGAGG GGTGGGGTCGAGTCATAAGAAAAAGCGGGAAGGACTGGGCTGCAATTGTC CTTGCCCTAAGGTTGTTTGGTGGTGTACCGTAGCGCGATTGGATGATTCC CTGATCGAGTTCATTTGTGGATGGTACGCCCGTGTGTGCTCCGCTCGGTT TGGTAGGACGAGAGACGACAATGGCGCGAGCGTGAGCATCACCCACAAGT GCACAGAGCTCGACAAGCACGTGAGTCATTTGTCTTTACAATATTCCACC CTTGGGAGTGCTGCCTCTTTTGGCAATGATATTCACGCGCGCGCACACGC ATACAAACACATGCACATCATAAACATGTGCACATATATATATATAGGTA TGTGCACACGAACCCAACCCTCTATAAAACAATCGCGCGCCATATATTAT TTTGCCAAACTCGTGTGAAATTCAGATTCCTCAGCGTCTGGGGGTGTCGA AAGCCATTCTCGAGAATGTGGTTTTCTGTCACCAGGAGGACGCCAGCTGG CCGCTGCAGGAGGGGGCGGTGGTGAAGAAGAAGTTCGACGACATTTTTGA GTCTTCACGGTACACGAAAGCCCTGGACACGATCAAGAAGACCAAGCAAG AGGACGCCGGC
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Coding sequence (CDS) from alignment at H-elongata_contig51803:5..3215-

>mRNA_H-elongata_contig51803.12458.1 ID=mRNA_H-elongata_contig51803.12458.1|Name=mRNA_H-elongata_contig51803.12458.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1248bp|location=Sequence derived from alignment at H-elongata_contig51803:5..3215- (Himanthalia elongata Himel1 dioecious)
ATGGCTTCCATCAACAAACTGTCCATCCGCGGCATTCGAAGCTTCAGTCA
TGAACATGGCTTCCATCAACAAACTGTCCATCCGCGGCATTCGAAGCTTC
AGTCATGAACGTGCTCTGCTGTTGTCTATGCTTTCGCAGATCATCGAGTT
TTACGCACCGCTCACGATGATCGTGGGGGCGAACGGATGTGGTAAAACGA
CCATCATCGAATGCCTCAAGTACGCGTGCACTGGGTCGCTTCCGCCGGGC
GCTCGAAACGGACAATCCTTCGTCCACGACCCCAAGGCGAGCAGGCTCTC
GCAAAGTGCTCTGCTGTTGTCTATGCTTTCGCAGATCATCGAGTTTTACG
CACCGCTCACGATGATCGTGGGGGCGAACGGATGTGGTAAAACGACCATC
ATCGAATGCCTCAAGTACGCGTGCACTGGGTCGCTTCCGCCGGGCGCTCG
AAACGGACAATCCTTCGTCCACGACCCCAAGGCGAGCAGGCTCTCGCAAA
TCAAGGCTAACATCAAGCTGCGTTTCGCTGGACGGGACGGCAGGTCAAGG
CTAACATCAAGCTGCGTTTCGCTGGACGGGACGGCAGGATGAGCGTTGTC
ATTCGTTCTTTCCAGCTCACTCAAAAAAAGGTCACCCTTCAGTTCAAGGC
CCTCGATGGCGTCATTAGATGAGCGTTGTCATTCGTTCTTTCCAGCTCAC
TCAAAAAAAGGTCACCCTTCAGTTCAAGGCCCTCGATGGCGTCATTAGGA
CGAGAGACGACAATGGCGCGAGCGTGAGCATCACCCACAAGTGCACAGAG
CTCGACAAGCACGACGAGAGACGACAATGGCGCGAGCGTGAGCATCACCC
ACAAGTGCACAGAGCTCGACAAGCACATTCCTCAGCGTCTGGGGGTGTCG
AAAGCCATTCTCGAGAATGTGGTTTTCTGTCACCAGGAGGACGCCAGCTG
GCCGCTGCAGGAGGGGGCGGTGGTGAAGAAGAAGTTCGACGACATTTTTG
AGTCTTCACGGTACACGAAAGCCCTGGACACGATCAAGAAGACCAAGCAA
GAGGACGCCGGCATTCCTCAGCGTCTGGGGGTGTCGAAAGCCATTCTCGA
GAATGTGGTTTTCTGTCACCAGGAGGACGCCAGCTGGCCGCTGCAGGAGG
GGGCGGTGGTGAAGAAGAAGTTCGACGACATTTTTGAGTCTTCACGGTAC
ACGAAAGCCCTGGACACGATCAAGAAGACCAAGCAAGAGGACGCCGGC
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