mRNA_H-elongata_contig51803.12458.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: D7G250_ECTSI (AAA_23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G250_ECTSI) HSP 1 Score: 340 bits (871), Expect = 1.710e-113 Identity = 170/207 (82.13%), Postives = 185/207 (89.37%), Query Frame = 1
Query: 1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQEDA 621
MASI+KLSIRGIRSFSHER Q+IEFY PLTMIVGANGCGKTTIIECLKYACTG+LPPGARNGQSFVHDPK S +++KANIKLRF+ RD + VVIRSFQLTQK+ TLQFKALDGVIRT++++G SVSI HKCTE+DKHIP RLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFES+RYTKALD IKKTKQE A
Sbjct: 1 MASIHKLSIRGIRSFSHER-------EQVIEFYTPLTMIVGANGCGKTTIIECLKYACTGALPPGARNGQSFVHDPKVSGTNEVKANIKLRFSARDKTVGVVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYA 200
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: H3GA74_PHYRM (AAA_23 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GA74_PHYRM) HSP 1 Score: 264 bits (675), Expect = 7.130e-87 Identity = 129/204 (63.24%), Postives = 162/204 (79.41%), Query Frame = 1
Query: 1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQ 612
M+SI KLSIRGIRSFS R QIIEFY PLT+++G NGCGKTT+IECLK ACTG LPPGAR+GQS +HDPK + +++KA+I+LRF R G+ VV R++Q+ Q K L FKALDGVIR ++ G VS+ HKC ELD+HIP LGVSKAILE+V+FCHQED++WPL+EGA +KK+FD+IFES+RYTKAL+ I+K K+
Sbjct: 1 MSSIEKLSIRGIRSFSPNR-------EQIIEFYHPLTVLLGDNGCGKTTVIECLKLACTGGLPPGARSGQSLIHDPKIAGTNEVKASIRLRFRNRAGKAMVVQRTYQVRQTKKNLVFKALDGVIRVVNELGEKVSLNHKCGELDQHIPDMLGVSKAILESVIFCHQEDSNWPLREGAELKKRFDNIFESARYTKALEAIRKLKK 197
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A1E7F3C8_9STRA (AAA_23 domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3C8_9STRA) HSP 1 Score: 263 bits (671), Expect = 1.750e-86 Identity = 131/205 (63.90%), Postives = 160/205 (78.05%), Query Frame = 1
Query: 1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQE 615
MASINKLS+RGIRSFS E A Q++EFY PLT+IVG CGKTTIIE LK+A G+LPPG GQ+FVHDPK+ + +KAN+KLRF G+ V++RS ++TQKK T+ FK LDG +RT ++ G ++++HKCTELD+ IP LGVSKAILENVVFCHQEDASWPLQEGAV+KKKFDDIF+S+RYTKALD K K+E
Sbjct: 1 MASINKLSVRGIRSFSPEDA------EQVLEFYMPLTVIVGE--CGKTTIIEALKFAVCGALPPGKNAGQAFVHDPKSIGSTSVKANLKLRFTAHGGKSMVIVRSMEVTQKKTTMTFKQLDGNLRTVNNTGERIAMSHKCTELDRQIPLMLGVSKAILENVVFCHQEDASWPLQEGAVLKKKFDDIFDSTRYTKALDVFSKAKKE 197
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A2P4XQ47_9STRA (DNA repair protein RAD50 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XQ47_9STRA) HSP 1 Score: 263 bits (672), Expect = 1.150e-84 Identity = 127/204 (62.25%), Postives = 162/204 (79.41%), Query Frame = 1
Query: 1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQ 612
M+SI KLSIRGIRSFS R +I+EFY PLT+++G NGCGKTT+IECLK ACTG LPPGAR+G S +HDPK + +++KA+I+LRF R G+ VV R++Q+ Q K LQFKALDGVIR ++ G VS+ HKC ELD+HIP LGVSKAILE+V+FCHQED++WPL+EGA +KK+FD+IFES+RYTKAL+ I+K K+
Sbjct: 1 MSSIEKLSIRGIRSFSPNR-------EEILEFYHPLTVLLGDNGCGKTTVIECLKLACTGGLPPGARSGHSLIHDPKIAGTNEVKASIRLRFRNRAGKAMVVNRTYQVRQTKKALQFKALDGVIRVVNELGEKVSLNHKCGELDQHIPDMLGVSKAILESVIFCHQEDSNWPLREGAELKKRFDNIFESARYTKALEAIRKLKK 197
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A835YS38_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS38_9STRA) HSP 1 Score: 258 bits (658), Expect = 3.230e-84 Identity = 131/206 (63.59%), Postives = 160/206 (77.67%), Query Frame = 1
Query: 1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITH-KCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQE 615
M+ + KLSIRGIRSF + QIIEFY PLTMIVG+NGCGKTTIIECL+YA TG LPP +RNGQ+FVHDPK S +++KA IKLR VV+RS QLTQKK T+QFKALDGV++ +++G + S T KCT+LDK +P + VS+AILE+V+FCHQE++SWPLQEGAV+KKKFDDIFES+RYTKALD IK T+ E
Sbjct: 1 MSVVKKLSIRGIRSFGPDT-------DQIIEFYMPLTMIVGSNGCGKTTIIECLRYATTGILPPNSRNGQTFVHDPKMSNTTEVKAQIKLRLQRGVDMPIVVVRSLQLTQKKTTMQFKALDGVLKYGNNDGGNTSSTGVKCTDLDKQLPTLMRVSRAILESVIFCHQEESSWPLQEGAVLKKKFDDIFESARYTKALDVIKATRVE 199
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A7S4KCM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCM0_9STRA) HSP 1 Score: 258 bits (659), Expect = 6.350e-82 Identity = 127/208 (61.06%), Postives = 164/208 (78.85%), Query Frame = 1
Query: 1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDN-GASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQEDA 621
MASI+KLS+RG+R+FS + Q+I FY+PLT+IVG NGCGKTTIIE L+YA G+LPPG R+GQ+FVHDPK++ + +KANIKLRF R G VV+RS +LTQKK T+QFKALDG++RT D N G V+++HKC ELD+ IP +GVSK ILE+VVF HQED+SWPLQ+ A +K+KFDDIF+S+RY KAL+ I+K++ E A
Sbjct: 1 MASISKLSVRGVRAFSPDDE------EQVISFYSPLTVIVGNNGCGKTTIIESLRYAVAGTLPPGTRSGQAFVHDPKSAGQTSVKANIKLRFNNRAGNSMVVVRSMELTQKKTTMQFKALDGILRTNDPNTGERVALSHKCGELDRQIPTLMGVSKPILEHVVFTHQEDSSWPLQDAASLKRKFDDIFDSTRYAKALEAIRKSRLEYA 202
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: F0Y226_AURAN (AAA_23 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y226_AURAN) HSP 1 Score: 249 bits (637), Expect = 3.050e-81 Identity = 123/201 (61.19%), Postives = 153/201 (76.12%), Query Frame = 1
Query: 1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKK 603
MA I KL+IRGIR+FS ER + IEF PLTMIVGANGCGKTT+IE Y TG PPG+ +G++FVHDPK S ++++KA +KLRF G+ VV+RS QLTQ+K T FK +DGVIR D +G S THKC ELDK +P +GVSKA+LE+V+FCHQE++SWPLQEGAV+KKKFDDIFES+RY+KALD ++K
Sbjct: 1 MACIEKLAIRGIRAFSPER-------EEAIEFQTPLTMIVGANGCGKTTVIE---YGTTGCAPPGSNSGRAFVHDPKVSGVTEVKAQLKLRFKNYAGQRMVVVRSMQLTQRKTTATFKQMDGVIRANDASGERTSYTHKCGELDKTVPMLIGVSKAVLESVIFCHQEESSWPLQEGAVLKKKFDDIFESARYSKALDELRK 191
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A7S2KC82_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KC82_9STRA) HSP 1 Score: 249 bits (637), Expect = 3.980e-81 Identity = 129/208 (62.02%), Postives = 164/208 (78.85%), Query Frame = 1
Query: 1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPP--GARN-GQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDN-GASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQ 612
MASI+KLSIRG+RSFS + Q+I F PLT+IVG NGCGKTTIIE LKYA TGSLPP G+++ GQ+FVHDPK+ + +KANIKLRF R G VV+RS +LTQKK TL FKALDG++R+ D G VS++H+C ELD+ IPQ +GVSKAILE+VVFCHQED++WPL+EG+ +KK+FDDIF+S+RY KAL+ I+KT++
Sbjct: 12 MASISKLSIRGVRSFSPDGD------EQVIAFCFPLTIIVGQNGCGKTTIIESLKYAVTGSLPPAQGSKSSGQAFVHDPKSYGSTNVKANIKLRFTNRAGTSMVVVRSMELTQKKTTLTFKALDGILRSTDPTTGERVSMSHRCGELDRQIPQLMGVSKAILEHVVFCHQEDSNWPLREGSELKKRFDDIFDSTRYAKALEAIQKTRK 213
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A662WHK9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHK9_9STRA) HSP 1 Score: 271 bits (692), Expect = 1.300e-80 Identity = 130/204 (63.73%), Postives = 167/204 (81.86%), Query Frame = 1
Query: 1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESSRYTKALDTIKKTKQ 612
M+SI KLSIRGIRSFS R ++IEFY PLT+I+G NGCGKTT+IECLK AC+GSLPPGAR+GQSFVHDPK + +++KA+++LRF R G+ VV R++Q+ Q K ++QFKALDGVIR ++ G VS+ HKC ELD+HIP +GVSKAIL++V+FCHQE+A+WPLQEGAV+KK+FDDIFES+RYTKAL+ I+K K+
Sbjct: 1 MSSIEKLSIRGIRSFSPNR-------EEVIEFYHPLTVILGDNGCGKTTVIECLKVACSGSLPPGARSGQSFVHDPKIAGTNEVKASVRLRFRNRAGKAMVVQRTYQVRQLKASVQFKALDGVIRVVNELGEKVSMGHKCGELDRHIPDMMGVSKAILDSVIFCHQEEANWPLQEGAVLKKRFDDIFESARYTKALEAIRKLKK 197
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Match: A0A7S1BNQ6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNQ6_9STRA) HSP 1 Score: 245 bits (626), Expect = 5.810e-80 Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 1
Query: 1 MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIIECLKYACTGSLPPGARNGQSFVHDPKASRLSQIKANIKLRFAGRDGRMSVVIRSFQLTQKKVTLQFKALDGVIRTRDDNGASVSITHKCTELDKHIPQRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESS 570
MAS+NKLSIRGIRSFS + + Q+I F PLT+IVG NGCGKTTIIE LKYA TGSLPPG ++GQ+FV+DP++ S +KA+IKLRFA R G+ V IRS ++TQ K T+ FKALDG+IRT D+NG VS++H+C+ELD+ +P LGVS+ +LE+VVFCHQED+SWPL EG+V+KK+FDDIF+S+
Sbjct: 1 MASLNKLSIRGIRSFSPDD------VEQVISFGYPLTIIVGDNGCGKTTIIESLKYAVTGSLPPGNKSGQAFVNDPRSCGRSNVKASIKLRFANRAGKTMVCIRSVEVTQTKKTMSFKALDGIIRTTDENGQRVSLSHRCSELDRQVPALLGVSRPVLEHVVFCHQEDSSWPLMEGSVLKKRFDDIFDST 184 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51803.12458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51803.12458.1 >prot_H-elongata_contig51803.12458.1 ID=prot_H-elongata_contig51803.12458.1|Name=mRNA_H-elongata_contig51803.12458.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp MASINKLSIRGIRSFSHERALLLSMLSQIIEFYAPLTMIVGANGCGKTTIback to top mRNA from alignment at H-elongata_contig51803:5..3215- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51803.12458.1 ID=mRNA_H-elongata_contig51803.12458.1|Name=mRNA_H-elongata_contig51803.12458.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3211bp|location=Sequence derived from alignment at H-elongata_contig51803:5..3215- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51803:5..3215- >mRNA_H-elongata_contig51803.12458.1 ID=mRNA_H-elongata_contig51803.12458.1|Name=mRNA_H-elongata_contig51803.12458.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1248bp|location=Sequence derived from alignment at H-elongata_contig51803:5..3215- (Himanthalia elongata Himel1 dioecious)back to top |