mRNA_H-elongata_contig51662.12440.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51662.12440.1
Unique NamemRNA_H-elongata_contig51662.12440.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: D7FRW0_ECTSI (Glycine cleavage system P protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRW0_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 3.430e-103
Identity = 172/208 (82.69%), Postives = 188/208 (90.38%), Query Frame = 1
Query:    1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALEDASTSAKIGFSADLCRTSDYMVHPVFNNHHSEVR 624
            YGGPHAAFMASK SYSRRMSGRIIGVTIDSRGAP LRMAMQTREQHIRRDKATSNICTAQALLANMAASY VYHGPEG+K IAERI+GMAAVTAAALK AG+GVS+E FFDTF VDVSAKG ++  IA ACEAKGANVRVIDD ++GLSFGESI K+DVVALLEGFG+SGS+L+ A+ SAKIGFS DL RTS+YM HPVFN +HSE +
Sbjct:  310 YGGPHAAFMASKHSYSRRMSGRIIGVTIDSRGAPCLRMAMQTREQHIRRDKATSNICTAQALLANMAASYGVYHGPEGIKGIAERINGMAAVTAAALKEAGFGVSSEQFFDTFSVDVSAKGTSSTAIAQACEAKGANVRVIDDKTIGLSFGESITKDDVVALLEGFGVSGSSLDSAAASAKIGFSDDLVRTSEYMTHPVFNMYHSETQ 517          
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: A0A835ZCN8_9STRA (Glycine cleavage system P protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN8_9STRA)

HSP 1 Score: 274 bits (700), Expect = 1.340e-82
Identity = 149/210 (70.95%), Postives = 162/210 (77.14%), Query Frame = 1
Query:    1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALEDASTSAKI--GFSADLCRTSDYMVHPVFNNHHSEVR 624
            +GGPHAAFMA+ + Y+RRM GRIIGVT+DSRG PALRMAMQTREQHIRRDKATSNICTAQALLANMAASY VYHGPEGVK IA RIHGMA  TA ALK AGYGV +  FFDTF VDVSAKG TA  IA A    G NVRVIDD +VGLSFGE+  K DV ALL  FG+   ALE A+ +A    GF A   RT+ YM HPVFN HHSE +
Sbjct:  317 FGGPHAAFMATSEKYARRMPGRIIGVTVDSRGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYGVYHGPEGVKAIATRIHGMAKTTAIALKEAGYGVPSTPFFDTFTVDVSAKGATASAIAAAAANHGVNVRVIDDKTVGLSFGEAHTKGDVEALLGAFGVGAGALEGAAAAAAGDGGFGAPFARTTPYMTHPVFNTHHSETQ 526          
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: A0A835ZE30_9STRA (Glycine cleavage system P protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE30_9STRA)

HSP 1 Score: 261 bits (666), Expect = 8.390e-78
Identity = 140/209 (66.99%), Postives = 161/209 (77.03%), Query Frame = 1
Query:    1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALEDASTSAK-IGFSADLCRTSDYMVHPVFNNHHSEVR 624
            +GGPHAAFMA+ + Y+RRM GRIIGVTIDSRG PALRMAMQTREQHIRRDKATSNICTAQALLANMAASY VYHGPEGVK IA RIHGMA  TA AL  AG+ VS+  +FDTF VDV++KGK A  +A    + G NVRV+D A+VGLSFGE+  K+DV ALL  FG+  SAL+ A+ +A   G  A   R + YM HPVFN HHSE +
Sbjct:  307 FGGPHAAFMATSEKYARRMPGRIIGVTIDSRGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYGVYHGPEGVKAIATRIHGMAKTTATALSQAGFKVSSAPYFDTFTVDVASKGKDAAAVAGKAASLGVNVRVVDSATVGLSFGEAHTKDDVEALLGAFGVEASALDAAAAAAAGSGVDAAFARATPYMTHPVFNTHHSETQ 515          
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: I2CQP8_NANGC (Glycine cleavage system P protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQP8_NANGC)

HSP 1 Score: 251 bits (641), Expect = 3.850e-74
Identity = 130/208 (62.50%), Postives = 158/208 (75.96%), Query Frame = 1
Query:    1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALEDASTSAKIGFSADLCRTSDYMVHPVFNNHHSEVR 624
            YGGPHAAFMASK +YSR+M+GRIIGV++DSRG PALRMAMQTREQHIRRDKATSNICTAQALLANMAASY VYHGP+G+K+IA RIHG+A VTA+AL  AG+ V    FFDT  VDV + G TA  +A A   +G N+RVID   VGL+FGE++ K +V  LL  FGL G  +E  +  A+    A++ R + +M HPVFN+H SE +
Sbjct:  334 YGGPHAAFMASKAAYSRKMAGRIIGVSVDSRGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYGVYHGPDGLKKIAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSTGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLRAFGLEGVDVEAVAAKAESPLPAEMARKTPFMTHPVFNSHQSETQ 541          
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: A0A7S2SFF7_9STRA (Glycine cleavage system P protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFF7_9STRA)

HSP 1 Score: 248 bits (634), Expect = 3.540e-73
Identity = 136/209 (65.07%), Postives = 162/209 (77.51%), Query Frame = 1
Query:    1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSA--LED-ASTSAKIGFSADLCRTSDYMVHPVFNNHHSE 618
            +GGPHAAFMA+   Y+RRM GRIIGVTIDSRG PALRMAMQTREQHIRRDKATSNICTAQALLANMAA+Y VYHGP G+  IA+R+H +AA TAA+LK +G+ VS   FFDTF VDVS+KG TAQ +  A  A G NVRV+++++VGLSFGE+ + ED+VALL  FG+  +   LE  A+ S   GF A L R SDYM HP+FN+  SE
Sbjct:  328 FGGPHAAFMATSDKYARRMPGRIIGVTIDSRGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAAYGVYHGPAGLDAIAQRVHMLAATTAASLKDSGFAVSTAPFFDTFTVDVSSKGLTAQAVQDAAAAAGCNVRVVNESTVGLSFGEAHITEDLVALLSAFGVDATTEGLESIAAASPSPGFGA-LARKSDYMTHPIFNSMRSE 535          
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: A0A6H5KN62_9PHAE (Glycine cleavage system P protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN62_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 7.480e-73
Identity = 128/161 (79.50%), Postives = 141/161 (87.58%), Query Frame = 1
Query:  142 RRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALEDASTSAKIGFSADLCRTSDYMVHPVFNNHHSEVR 624
            RRDKATSNICTAQALLANMAASY VYHGPEG+K IAERI+GMAAVTAAALK AG+GVS+E FFDTF VDVSAKG T+  IA ACEAKGANVRVIDD +VGLSFGESI K+DVVALLEGFG+S S+L+ A+ SAK GFS DL RTS+YM HPVFN HHSE +
Sbjct:   11 RRDKATSNICTAQALLANMAASYGVYHGPEGIKGIAERINGMAAVTAAALKEAGFGVSSEQFFDTFSVDVSAKGTTSAAIAQACEAKGANVRVIDDKTVGLSFGESITKDDVVALLEGFGVSASSLDSAAASAKTGFSDDLVRTSEYMTHPVFNMHHSETQ 171          
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: A0A7S2C4K9_9STRA (Glycine cleavage system P protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C4K9_9STRA)

HSP 1 Score: 241 bits (615), Expect = 1.360e-70
Identity = 130/207 (62.80%), Postives = 154/207 (74.40%), Query Frame = 1
Query:    1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALE-DASTSAKIGFSADLCRTSDYMVHPVFNNHHSE 618
            +GGPHAAFMA+   YSRRM GRIIGVTIDS+  PALRMAMQTREQHIRRDKATSNICTAQALLANMAASY +YHG +G+  IA+R H +AAVTAAALK AGY V   AFFDT  VDVS+KGKTA E+  A  A G NVR IDD +VG+S GE +   D+V LL  F ++ +    +AS S   G  +   RTS+++ HPVFN++ SE
Sbjct:  304 FGGPHAAFMATSDKYSRRMPGRIIGVTIDSQSKPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYGIYHGKDGLVAIADRTHKLAAVTAAALKDAGYAVPEGAFFDTITVDVSSKGKTAAEVQAAAAAAGCNVREIDDTTVGISMGEPVTAHDLVQLLSAFDVTATTASLEASASTVGGVDSSFKRTSEFLTHPVFNSYRSE 510          
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: A0A7S2XXQ1_9STRA (Glycine cleavage system P protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXQ1_9STRA)

HSP 1 Score: 236 bits (601), Expect = 1.350e-68
Identity = 124/209 (59.33%), Postives = 155/209 (74.16%), Query Frame = 1
Query:    1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEA-FFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALEDASTSAKIGFSADLCRTSDYMVHPVFNNHHSEVR 624
            YGGPHA +MA+   YSR++ GR+IGV++DS+G PALRMAMQTREQHIRRDKATSNICTAQALLANMA++Y VYHGPEG+K+IA RIH M   T AAL+ AGY +  E  FFDT  VDV +KGKT+ E+ +A  A G N RV+D+A+VGLSFGE+I K+DV ++L  FG        AST           R+S++M HPVF++HHSE +
Sbjct:  317 YGGPHAGYMATSMKYSRKLPGRLIGVSVDSQGKPALRMAMQTREQHIRRDKATSNICTAQALLANMASAYGVYHGPEGMKQIAARIHYMTHATKAALEEAGYAIKTEGVFFDTITVDVGSKGKTSSEVQSALAASGLNCRVVDEATVGLSFGETINKDDVKSILCAFGSDADVDAMASTPQCAITGTPFLRSSEFMTHPVFHSHHSETQ 525          
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: A0A7S1BEK3_9STRA (Glycine cleavage system P protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BEK3_9STRA)

HSP 1 Score: 231 bits (589), Expect = 5.210e-68
Identity = 122/209 (58.37%), Postives = 149/209 (71.29%), Query Frame = 1
Query:    1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALEDASTSAKI-GFSADLCRTSDYMVHPVFNNHHSEVR 624
            +GGPHA F+A+  +YSR+M GRIIGVTIDS GAP LRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEG+K+IA RIH +A V    L  AGY  S   FFDTF VD S+KG T+ ++   C   GANVR+ID+ +VG+S GE   ++D+  LL  FG+ G+   D S  A +    + + R  D + HP+F  HHSE +
Sbjct:  323 FGGPHAGFLATSDTYSRKMPGRIIGVTIDSEGAPCLRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGLKDIAGRIHALARVAHRELTSAGYKCSEGPFFDTFTVDTSSKGMTSAQVQAECVKVGANVRLIDENTVGISMGEGFSRDDIKDLLSAFGVQGA---DVSADASLTSVDSTVAREGDILTHPIFRQHHSETQ 528          
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: A0A7S1BFH9_9STRA (Glycine cleavage system P protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BFH9_9STRA)

HSP 1 Score: 231 bits (589), Expect = 7.020e-67
Identity = 122/209 (58.37%), Postives = 149/209 (71.29%), Query Frame = 1
Query:    1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALEDASTSAKI-GFSADLCRTSDYMVHPVFNNHHSEVR 624
            +GGPHA F+A+  +YSR+M GRIIGVTIDS GAP LRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEG+K+IA RIH +A V    L  AGY  S   FFDTF VD S+KG T+ ++   C   GANVR+ID+ +VG+S GE   ++D+  LL  FG+ G+   D S  A +    + + R  D + HP+F  HHSE +
Sbjct:  323 FGGPHAGFLATSDTYSRKMPGRIIGVTIDSEGAPCLRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGLKDIAGRIHALARVAHRELTSAGYKCSEGPFFDTFTVDTSSKGMTSAQVQAECVKVGANVRLIDENTVGISMGEGFSRDDIKDLLSAFGVQGA---DVSADASLTSVDSTVAREGDILTHPIFRQHHSETQ 528          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRW0_ECTSI3.430e-10382.69Glycine cleavage system P protein n=1 Tax=Ectocarp... [more]
A0A835ZCN8_9STRA1.340e-8270.95Glycine cleavage system P protein n=1 Tax=Tribonem... [more]
A0A835ZE30_9STRA8.390e-7866.99Glycine cleavage system P protein n=1 Tax=Tribonem... [more]
I2CQP8_NANGC3.850e-7462.50Glycine cleavage system P protein n=1 Tax=Nannochl... [more]
A0A7S2SFF7_9STRA3.540e-7365.07Glycine cleavage system P protein n=1 Tax=Rhizochr... [more]
A0A6H5KN62_9PHAE7.480e-7379.50Glycine cleavage system P protein n=1 Tax=Ectocarp... [more]
A0A7S2C4K9_9STRA1.360e-7062.80Glycine cleavage system P protein n=1 Tax=Dictyoch... [more]
A0A7S2XXQ1_9STRA1.350e-6859.33Glycine cleavage system P protein n=1 Tax=Fibrocap... [more]
A0A7S1BEK3_9STRA5.210e-6858.37Glycine cleavage system P protein n=1 Tax=Corethro... [more]
A0A7S1BFH9_9STRA7.020e-6758.37Glycine cleavage system P protein n=1 Tax=Corethro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51662contigH-elongata_contig51662:798..3833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score314.7
Seed ortholog evalue3.2e-83
Seed eggNOG ortholog2880.D7FRW0
Preferred nameGLDC
KEGG rclassRC00022,RC00929,RC02834,RC02880
KEGG koko:K00281
KEGG ReactionR01221,R03425
KEGG Pathwayko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200
KEGG ModuleM00532
GOsGO:0001101,GO:0001505,GO:0003674,GO:0003824,GO:0004375,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005886,GO:0005960,GO:0006082,GO:0006091,GO:0006520,GO:0006544,GO:0006546,GO:0006730,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0014075,GO:0016020,GO:0016054,GO:0016491,GO:0016594,GO:0016597,GO:0016638,GO:0016639,GO:0016642,GO:0017144,GO:0019464,GO:0019752,GO:0019842,GO:0019899,GO:0022900,GO:0030170,GO:0031406,GO:0031974,GO:0032991,GO:0033993,GO:0034097,GO:0036094,GO:0036255,GO:0042133,GO:0042135,GO:0042165,GO:0042221,GO:0042737,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046983,GO:0047960,GO:0048037,GO:0050662,GO:0050896,GO:0051716,GO:0055114,GO:0060359,GO:0065007,GO:0065008,GO:0070013,GO:0070279,GO:0070280,GO:0070542,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1901698,GO:1901700,GO:1902494,GO:1903442,GO:1990204,GO:1990823,GO:1990830
EggNOG free text desc.glycine dehydrogenase (decarboxylating) activity
EggNOG OGsCOG1003@1,KOG2040@2759
EC1.4.4.2
COG Functional cat.E
BiGG ReactioniRC1080.CRv4_Au5_s12_g3759_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlycine dehydrogenase (decarboxylating)
Ec32 orthologEc-23_004150.1
Exons4
Model size639
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51662.12440.1prot_H-elongata_contig51662.12440.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51662 798..3809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.3936837-CDS-H-elongata_contig51662:797..9501622930845.3936837-CDS-H-elongata_contig51662:797..950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51662 798..950 -
1691679595.0690346-CDS-H-elongata_contig51662:797..9501691679595.0690346-CDS-H-elongata_contig51662:797..950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51662 798..950 -
1622930845.411441-CDS-H-elongata_contig51662:1619..17621622930845.411441-CDS-H-elongata_contig51662:1619..1762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51662 1620..1762 -
1691679595.0857563-CDS-H-elongata_contig51662:1619..17621691679595.0857563-CDS-H-elongata_contig51662:1619..1762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51662 1620..1762 -
1622930845.4234715-CDS-H-elongata_contig51662:2229..24291622930845.4234715-CDS-H-elongata_contig51662:2229..2429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51662 2230..2429 -
1691679595.1009948-CDS-H-elongata_contig51662:2229..24291691679595.1009948-CDS-H-elongata_contig51662:2229..2429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51662 2230..2429 -
1622930845.4358385-CDS-H-elongata_contig51662:3690..38091622930845.4358385-CDS-H-elongata_contig51662:3690..3809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51662 3691..3809 -
1691679595.1117313-CDS-H-elongata_contig51662:3690..38091691679595.1117313-CDS-H-elongata_contig51662:3690..3809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51662 3691..3809 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.4498324-UTR-H-elongata_contig51662:3809..38331622930845.4498324-UTR-H-elongata_contig51662:3809..3833Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51662 3810..3833 -
1691679595.1242087-UTR-H-elongata_contig51662:3809..38331691679595.1242087-UTR-H-elongata_contig51662:3809..3833Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51662 3810..3833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51662.12440.1

>prot_H-elongata_contig51662.12440.1 ID=prot_H-elongata_contig51662.12440.1|Name=mRNA_H-elongata_contig51662.12440.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp
MASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICT
AQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEA
FFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKED
VVALLEGFGLSGSALEDASTSAKIGFSADLCRTSDYMVHPVFNNHHSEVR
HGDS*
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mRNA from alignment at H-elongata_contig51662:798..3833-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51662.12440.1 ID=mRNA_H-elongata_contig51662.12440.1|Name=mRNA_H-elongata_contig51662.12440.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3036bp|location=Sequence derived from alignment at H-elongata_contig51662:798..3833- (Himanthalia elongata Himel1 dioecious)
TACGGCGGCCCCCACGCGGCTTTCATGGCCTCCAAGCAGTCGTACTCCCG CCGTATGTCTGGACGAATAATCGGAGTCACCATCGACAGCCGTGGCGCCC CGGCGCTCCGCATGGCAATGCAGACGCGCGAGCAGCACATCAGGTAACGA AGGACTATGGCTAGGGAAGGGGGGGGGGAGGGGTAGTGACATTTTGAATG CTGAATGTGTTAGACCGTTGACCACTGACCACGCGTATGTCCTCGGTAGG GATCGATCGACCACAGCCAATCAAATCGTTCTTTCATTCTTATCTTGCCG AAGGGAGGGAGGGGAGGGGTGGCGAGGGGGCCAGCGGAAAGCGGGGCAAG GGGCTAAAGCTGGCGTGCGGTTACTTCCTTTGTCTTTCGGTTGTTACGCG AAAATACTGAACAGCCGAACACGGAGCAGAAAAAAATGCTGGATCTGGGT ACGACGAAGTTCTAGATGTGCGCCATTGTACCAAATAGCCTAGGCTTTAC GCCTGACTCTTATGGAGTAGACCTTGTAGAGGTACTGCTTTTTGTGTTGT GTTGTGCTGTGCTGTGCTGTGATGTGCCTACATGTCGAACTGTCCGAAGC GGAGAGTCCTTTGGAGCACGAAATGCTTGCGCGAGTGTGTGCTTGTTTTT CCCATCACATTGCTCCTCCCTACAGCCTTCATAGAGTCTACGATATAAAG TGTACTATATTGCTAACACAGCGCAATGTCACTGTAACGCTTTCACCATC GCGTCAGGCCTTGTAAACAACCTTTCTAAAAATTATTCGATGATTATCGA AATGTACAGATACATGCCTGAGACGTGGAGGAAGTCTCATTCGCGCAAAG CTAAGGGCGGGTATTATCGAGGTTACGAAAAAATAAAATCCAGCCGATTT AAATTTAAATCGGGCTCTGATTGGTCGAAGACTAAATAAGGCCTAGCCTC GACCAATCAGAGCCTGATTTAAATTTAAATCGGATGGAATTTACATTTTA GTAACCCCGTGAATACCCGCCCTAAGAAACTCCAGTCTAAATATTCAATG ATGTGCCTGTACTGATATATCTATGTATATACAGAGTCTGCATCAGACGT CGAGGAACTCTAATTCGGTCGAGGCGAAGAAAAAACTCTAAAATAAACAC ATAAATATATATATATATATGTAGAGATGTAGTATATTTATATACGTCGT ATGTATGAACGATGCCGGGTTTGCTACGAGACGCACCTTTCCACGAATCT CTTACTCCTTCCATCTGCGAGAGGGGGCAAACGAACGCGAGCTATACTTG CGGCACGATGGCTGATATCTGGCCGGCGGGTGCCTGCCACGGAACTGGTT AGTCACGCCTCACGCCTCCTTCCGTCCCCTCTCCCTCCCGGCCTCGCCTC CCAGGCGTGATAAGGCCACCTCCAATATCTGCACCGCCCAGGCCCTCCTC GCCAACATGGCGGCCTCGTACGCGGTCTACCACGGCCCCGAGGGCGTCAA GGAAATCGCCGAGCGGATCCACGGCATGGCAGCGGTGACCGCAGCGGCTC TCAAGGGCGCCGGCTACGGCGTCTCGGCGGAGGCGTTCTTCGACACCTTC AAGGGTGAGCGAAAGAAGAAAAAGGCGCGATATACGAGCGTGTTTTTTCC GTCGCTGTTCTATCGGTGTAGGATTCTGCTGTGCTTGTTGCGCATTCACA ACGTGGAGGTAAAGTCACACAGTGCACTTTTATCTTCATACATACACTCC GCACTAGATTCATGCTCCACGCTAGACAACATCGCACTGTTGATATATTG TAGCAAGTTATTTAATTACAAGGCAACCGCGTATAAGCGACTAAATAGCA CATTGCACTGCCTGAAATACAGTACTGCGACCCTAGGCTTTGTAGAGCTA AATTTATGCATACTGTACTATTCTACGTTTTTCGCTTTAGACTGTTGATA GTATAGTACATTACTGTACCTACCTTGGCTTGTTCTACGGCACTTATGAT CACCTGACGAGGTTTGCCGAATGCTTTGGGGGCTTGGCGGGTGTATTTTA ATCTCTTATTGTTATTGGCAGTGGACGTTTCGGCGAAGGGCAAGACTGCG CAGGAGATCGCGACGGCGTGCGAGGCGAAGGGCGCCAACGTTCGTGTCAT TGACGACGCCAGCGTCGGGCTGAGCTTTGGCGAGTCCATCGTGAAGGAGG ACGTTGTTGCCCTTGTGAGTCAGGCCAAAGCTCTGTCGCTTACTATGAAT AGCACGTCTTCCATTCGTCCCAAGCAGATGTTGTGATGGGGGGGGTGGCC CCTTCCTTGTGTGGGCAGACATGGTGTTGCGCGCGTATAATGACGTCAGT CTGATGGCTGTGTGATGACGGCGACATCCTCTTGAGATGAACGGTGGTGT AGAGTAAGTGATGCCGGGTGACGTCGTGTTATTACGAATTATAAATCATG GCATAAATAACCCGTTATCTCTCTCATCTCTGGGAACCGACTGACAGAGA TGGGAATATGTTATGGAGGCGTTTGTATCGAGATACGTGATGACAATAAT ATTGCTCTATCTCTAAATTAAATATGGCGGATGACGATGAGGTGCTGATA TATACGATGACTCTTGCCTTCCTGCTGCCGCGATGTCAGACTTTCTCCAT ATATCTCTCTTCTCTCTCTATCTGTAATATAGATATATCAAATTAAACAC ATACACACGGATTAAACACATACACACGCACACACCAAGTGGGTTACATG CAGTATAGCATAGAATGAGTAGATCACAGGGCCGGATTGCGTGGTTATGT ACAAGTTAATAAATACACACATACATACATACATACACACACAAGCACTA AAATCCAAAAACAAAACAAAACCCAACTTGCAGCTGGAGGGCTTCGGACT GTCGGGGTCTGCTCTTGAAGACGCCTCCACGAGCGCCAAGATCGGGTTCT CAGCTGATCTATGCCGTACCTCTGACTACATGGTCCACCCCGTCTTCAAC AACCACCACAGTGAGGTACGCCACGGTGATTCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig51662:798..3833-

>mRNA_H-elongata_contig51662.12440.1 ID=mRNA_H-elongata_contig51662.12440.1|Name=mRNA_H-elongata_contig51662.12440.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig51662:798..3833- (Himanthalia elongata Himel1 dioecious)
ATGGCCTCCAAGCAGTCGTACTCCCGCCGTATGTCTGGACGAATAATCGG
AGTCACCATCGACAGCCGTGGCGCCCCGGCGCTCCGCATGGCAATGCAGA
CGCGCGAGCAGCACATCAGATGGCCTCCAAGCAGTCGTACTCCCGCCGTA
TGTCTGGACGAATAATCGGAGTCACCATCGACAGCCGTGGCGCCCCGGCG
CTCCGCATGGCAATGCAGACGCGCGAGCAGCACATCAGGCGTGATAAGGC
CACCTCCAATATCTGCACCGCCCAGGCCCTCCTCGCCAACATGGCGGCCT
CGTACGCGGTCTACCACGGCCCCGAGGGCGTCAAGGAAATCGCCGAGCGG
ATCCACGGCATGGCAGCGGTGACCGCAGCGGCTCTCAAGGGCGCCGGCTA
CGGCGTCTCGGCGGAGGCGTTCTTCGACACCTTCAAGGGCGTGATAAGGC
CACCTCCAATATCTGCACCGCCCAGGCCCTCCTCGCCAACATGGCGGCCT
CGTACGCGGTCTACCACGGCCCCGAGGGCGTCAAGGAAATCGCCGAGCGG
ATCCACGGCATGGCAGCGGTGACCGCAGCGGCTCTCAAGGGCGCCGGCTA
CGGCGTCTCGGCGGAGGCGTTCTTCGACACCTTCAAGGTGGACGTTTCGG
CGAAGGGCAAGACTGCGCAGGAGATCGCGACGGCGTGCGAGGCGAAGGGC
GCCAACGTTCGTGTCATTGACGACGCCAGCGTCGGGCTGAGCTTTGGCGA
GTCCATCGTGAAGGAGGACGTTGTTGCCCTTTGGACGTTTCGGCGAAGGG
CAAGACTGCGCAGGAGATCGCGACGGCGTGCGAGGCGAAGGGCGCCAACG
TTCGTGTCATTGACGACGCCAGCGTCGGGCTGAGCTTTGGCGAGTCCATC
GTGAAGGAGGACGTTGTTGCCCTTCTGGAGGGCTTCGGACTGTCGGGGTC
TGCTCTTGAAGACGCCTCCACGAGCGCCAAGATCGGGTTCTCAGCTGATC
TATGCCGTACCTCTGACTACATGGTCCACCCCGTCTTCAACAACCACCAC
AGTGAGGTACGCCACGGTGATTCTTGACTGGAGGGCTTCGGACTGTCGGG
GTCTGCTCTTGAAGACGCCTCCACGAGCGCCAAGATCGGGTTCTCAGCTG
ATCTATGCCGTACCTCTGACTACATGGTCCACCCCGTCTTCAACAACCAC
CACAGTGAGGTACGCCACGGTGATTCTTGA
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