mRNA_H-elongata_contig51662.12440.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: D7FRW0_ECTSI (Glycine cleavage system P protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRW0_ECTSI) HSP 1 Score: 328 bits (842), Expect = 3.430e-103 Identity = 172/208 (82.69%), Postives = 188/208 (90.38%), Query Frame = 1
Query: 1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALEDASTSAKIGFSADLCRTSDYMVHPVFNNHHSEVR 624
YGGPHAAFMASK SYSRRMSGRIIGVTIDSRGAP LRMAMQTREQHIRRDKATSNICTAQALLANMAASY VYHGPEG+K IAERI+GMAAVTAAALK AG+GVS+E FFDTF VDVSAKG ++ IA ACEAKGANVRVIDD ++GLSFGESI K+DVVALLEGFG+SGS+L+ A+ SAKIGFS DL RTS+YM HPVFN +HSE +
Sbjct: 310 YGGPHAAFMASKHSYSRRMSGRIIGVTIDSRGAPCLRMAMQTREQHIRRDKATSNICTAQALLANMAASYGVYHGPEGIKGIAERINGMAAVTAAALKEAGFGVSSEQFFDTFSVDVSAKGTSSTAIAQACEAKGANVRVIDDKTIGLSFGESITKDDVVALLEGFGVSGSSLDSAAASAKIGFSDDLVRTSEYMTHPVFNMYHSETQ 517
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: A0A835ZCN8_9STRA (Glycine cleavage system P protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN8_9STRA) HSP 1 Score: 274 bits (700), Expect = 1.340e-82 Identity = 149/210 (70.95%), Postives = 162/210 (77.14%), Query Frame = 1
Query: 1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALEDASTSAKI--GFSADLCRTSDYMVHPVFNNHHSEVR 624
+GGPHAAFMA+ + Y+RRM GRIIGVT+DSRG PALRMAMQTREQHIRRDKATSNICTAQALLANMAASY VYHGPEGVK IA RIHGMA TA ALK AGYGV + FFDTF VDVSAKG TA IA A G NVRVIDD +VGLSFGE+ K DV ALL FG+ ALE A+ +A GF A RT+ YM HPVFN HHSE +
Sbjct: 317 FGGPHAAFMATSEKYARRMPGRIIGVTVDSRGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYGVYHGPEGVKAIATRIHGMAKTTAIALKEAGYGVPSTPFFDTFTVDVSAKGATASAIAAAAANHGVNVRVIDDKTVGLSFGEAHTKGDVEALLGAFGVGAGALEGAAAAAAGDGGFGAPFARTTPYMTHPVFNTHHSETQ 526
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: A0A835ZE30_9STRA (Glycine cleavage system P protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE30_9STRA) HSP 1 Score: 261 bits (666), Expect = 8.390e-78 Identity = 140/209 (66.99%), Postives = 161/209 (77.03%), Query Frame = 1
Query: 1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALEDASTSAK-IGFSADLCRTSDYMVHPVFNNHHSEVR 624
+GGPHAAFMA+ + Y+RRM GRIIGVTIDSRG PALRMAMQTREQHIRRDKATSNICTAQALLANMAASY VYHGPEGVK IA RIHGMA TA AL AG+ VS+ +FDTF VDV++KGK A +A + G NVRV+D A+VGLSFGE+ K+DV ALL FG+ SAL+ A+ +A G A R + YM HPVFN HHSE +
Sbjct: 307 FGGPHAAFMATSEKYARRMPGRIIGVTIDSRGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYGVYHGPEGVKAIATRIHGMAKTTATALSQAGFKVSSAPYFDTFTVDVASKGKDAAAVAGKAASLGVNVRVVDSATVGLSFGEAHTKDDVEALLGAFGVEASALDAAAAAAAGSGVDAAFARATPYMTHPVFNTHHSETQ 515
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: I2CQP8_NANGC (Glycine cleavage system P protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQP8_NANGC) HSP 1 Score: 251 bits (641), Expect = 3.850e-74 Identity = 130/208 (62.50%), Postives = 158/208 (75.96%), Query Frame = 1
Query: 1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALEDASTSAKIGFSADLCRTSDYMVHPVFNNHHSEVR 624
YGGPHAAFMASK +YSR+M+GRIIGV++DSRG PALRMAMQTREQHIRRDKATSNICTAQALLANMAASY VYHGP+G+K+IA RIHG+A VTA+AL AG+ V FFDT VDV + G TA +A A +G N+RVID VGL+FGE++ K +V LL FGL G +E + A+ A++ R + +M HPVFN+H SE +
Sbjct: 334 YGGPHAAFMASKAAYSRKMAGRIIGVSVDSRGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYGVYHGPDGLKKIAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSTGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLRAFGLEGVDVEAVAAKAESPLPAEMARKTPFMTHPVFNSHQSETQ 541
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: A0A7S2SFF7_9STRA (Glycine cleavage system P protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFF7_9STRA) HSP 1 Score: 248 bits (634), Expect = 3.540e-73 Identity = 136/209 (65.07%), Postives = 162/209 (77.51%), Query Frame = 1
Query: 1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSA--LED-ASTSAKIGFSADLCRTSDYMVHPVFNNHHSE 618
+GGPHAAFMA+ Y+RRM GRIIGVTIDSRG PALRMAMQTREQHIRRDKATSNICTAQALLANMAA+Y VYHGP G+ IA+R+H +AA TAA+LK +G+ VS FFDTF VDVS+KG TAQ + A A G NVRV+++++VGLSFGE+ + ED+VALL FG+ + LE A+ S GF A L R SDYM HP+FN+ SE
Sbjct: 328 FGGPHAAFMATSDKYARRMPGRIIGVTIDSRGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAAYGVYHGPAGLDAIAQRVHMLAATTAASLKDSGFAVSTAPFFDTFTVDVSSKGLTAQAVQDAAAAAGCNVRVVNESTVGLSFGEAHITEDLVALLSAFGVDATTEGLESIAAASPSPGFGA-LARKSDYMTHPIFNSMRSE 535
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: A0A6H5KN62_9PHAE (Glycine cleavage system P protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN62_9PHAE) HSP 1 Score: 242 bits (617), Expect = 7.480e-73 Identity = 128/161 (79.50%), Postives = 141/161 (87.58%), Query Frame = 1
Query: 142 RRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALEDASTSAKIGFSADLCRTSDYMVHPVFNNHHSEVR 624
RRDKATSNICTAQALLANMAASY VYHGPEG+K IAERI+GMAAVTAAALK AG+GVS+E FFDTF VDVSAKG T+ IA ACEAKGANVRVIDD +VGLSFGESI K+DVVALLEGFG+S S+L+ A+ SAK GFS DL RTS+YM HPVFN HHSE +
Sbjct: 11 RRDKATSNICTAQALLANMAASYGVYHGPEGIKGIAERINGMAAVTAAALKEAGFGVSSEQFFDTFSVDVSAKGTTSAAIAQACEAKGANVRVIDDKTVGLSFGESITKDDVVALLEGFGVSASSLDSAAASAKTGFSDDLVRTSEYMTHPVFNMHHSETQ 171
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: A0A7S2C4K9_9STRA (Glycine cleavage system P protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C4K9_9STRA) HSP 1 Score: 241 bits (615), Expect = 1.360e-70 Identity = 130/207 (62.80%), Postives = 154/207 (74.40%), Query Frame = 1
Query: 1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALE-DASTSAKIGFSADLCRTSDYMVHPVFNNHHSE 618
+GGPHAAFMA+ YSRRM GRIIGVTIDS+ PALRMAMQTREQHIRRDKATSNICTAQALLANMAASY +YHG +G+ IA+R H +AAVTAAALK AGY V AFFDT VDVS+KGKTA E+ A A G NVR IDD +VG+S GE + D+V LL F ++ + +AS S G + RTS+++ HPVFN++ SE
Sbjct: 304 FGGPHAAFMATSDKYSRRMPGRIIGVTIDSQSKPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYGIYHGKDGLVAIADRTHKLAAVTAAALKDAGYAVPEGAFFDTITVDVSSKGKTAAEVQAAAAAAGCNVREIDDTTVGISMGEPVTAHDLVQLLSAFDVTATTASLEASASTVGGVDSSFKRTSEFLTHPVFNSYRSE 510
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: A0A7S2XXQ1_9STRA (Glycine cleavage system P protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXQ1_9STRA) HSP 1 Score: 236 bits (601), Expect = 1.350e-68 Identity = 124/209 (59.33%), Postives = 155/209 (74.16%), Query Frame = 1
Query: 1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEA-FFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALEDASTSAKIGFSADLCRTSDYMVHPVFNNHHSEVR 624
YGGPHA +MA+ YSR++ GR+IGV++DS+G PALRMAMQTREQHIRRDKATSNICTAQALLANMA++Y VYHGPEG+K+IA RIH M T AAL+ AGY + E FFDT VDV +KGKT+ E+ +A A G N RV+D+A+VGLSFGE+I K+DV ++L FG AST R+S++M HPVF++HHSE +
Sbjct: 317 YGGPHAGYMATSMKYSRKLPGRLIGVSVDSQGKPALRMAMQTREQHIRRDKATSNICTAQALLANMASAYGVYHGPEGMKQIAARIHYMTHATKAALEEAGYAIKTEGVFFDTITVDVGSKGKTSSEVQSALAASGLNCRVVDEATVGLSFGETINKDDVKSILCAFGSDADVDAMASTPQCAITGTPFLRSSEFMTHPVFHSHHSETQ 525
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: A0A7S1BEK3_9STRA (Glycine cleavage system P protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BEK3_9STRA) HSP 1 Score: 231 bits (589), Expect = 5.210e-68 Identity = 122/209 (58.37%), Postives = 149/209 (71.29%), Query Frame = 1
Query: 1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALEDASTSAKI-GFSADLCRTSDYMVHPVFNNHHSEVR 624
+GGPHA F+A+ +YSR+M GRIIGVTIDS GAP LRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEG+K+IA RIH +A V L AGY S FFDTF VD S+KG T+ ++ C GANVR+ID+ +VG+S GE ++D+ LL FG+ G+ D S A + + + R D + HP+F HHSE +
Sbjct: 323 FGGPHAGFLATSDTYSRKMPGRIIGVTIDSEGAPCLRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGLKDIAGRIHALARVAHRELTSAGYKCSEGPFFDTFTVDTSSKGMTSAQVQAECVKVGANVRLIDENTVGISMGEGFSRDDIKDLLSAFGVQGA---DVSADASLTSVDSTVAREGDILTHPIFRQHHSETQ 528
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Match: A0A7S1BFH9_9STRA (Glycine cleavage system P protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BFH9_9STRA) HSP 1 Score: 231 bits (589), Expect = 7.020e-67 Identity = 122/209 (58.37%), Postives = 149/209 (71.29%), Query Frame = 1
Query: 1 YGGPHAAFMASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGVKEIAERIHGMAAVTAAALKGAGYGVSAEAFFDTFKVDVSAKGKTAQEIATACEAKGANVRVIDDASVGLSFGESIVKEDVVALLEGFGLSGSALEDASTSAKI-GFSADLCRTSDYMVHPVFNNHHSEVR 624
+GGPHA F+A+ +YSR+M GRIIGVTIDS GAP LRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEG+K+IA RIH +A V L AGY S FFDTF VD S+KG T+ ++ C GANVR+ID+ +VG+S GE ++D+ LL FG+ G+ D S A + + + R D + HP+F HHSE +
Sbjct: 323 FGGPHAGFLATSDTYSRKMPGRIIGVTIDSEGAPCLRMAMQTREQHIRRDKATSNICTAQALLANMAASYAVYHGPEGLKDIAGRIHALARVAHRELTSAGYKCSEGPFFDTFTVDTSSKGMTSAQVQAECVKVGANVRLIDENTVGISMGEGFSRDDIKDLLSAFGVQGA---DVSADASLTSVDSTVAREGDILTHPIFRQHHSETQ 528 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51662.12440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51662.12440.1 >prot_H-elongata_contig51662.12440.1 ID=prot_H-elongata_contig51662.12440.1|Name=mRNA_H-elongata_contig51662.12440.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp MASKQSYSRRMSGRIIGVTIDSRGAPALRMAMQTREQHIRRDKATSNICTback to top mRNA from alignment at H-elongata_contig51662:798..3833- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51662.12440.1 ID=mRNA_H-elongata_contig51662.12440.1|Name=mRNA_H-elongata_contig51662.12440.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3036bp|location=Sequence derived from alignment at H-elongata_contig51662:798..3833- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51662:798..3833- >mRNA_H-elongata_contig51662.12440.1 ID=mRNA_H-elongata_contig51662.12440.1|Name=mRNA_H-elongata_contig51662.12440.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig51662:798..3833- (Himanthalia elongata Himel1 dioecious)back to top |