mRNA_H-elongata_contig51561.12424.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51561.12424.1
Unique NamemRNA_H-elongata_contig51561.12424.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51561.12424.1 vs. uniprot
Match: A0A6H5KE38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE38_9PHAE)

HSP 1 Score: 334 bits (856), Expect = 1.430e-103
Identity = 170/234 (72.65%), Postives = 200/234 (85.47%), Query Frame = 1
Query:    1 PKVTYLTAAGNELTGEGLDGVRPLRDLKVFNASSNRVRRIPPSVFSQFRQLQALVLNNNEIGEVPPSWFKKGLLSLNTLVVSHNKINSLSASGLGRLTSLTKLSVSHNMLSDVPDLSSCSGLEELRAXXXXXXXVPATLSKNVALRTLDLGHNNIDDWVGLELAGETLTVLVQLTLAGNPLRDERSSDADTTGAGAEK----YLTKIRSLFPGLKVRDGKRVLMKKSHTYYQQR 690
            P+VTYLTAAGNELTG+GLDGVRPL+DLKVFNAS NRVRRIPP+VF+QFRQLQALVL++NEI EVPP+W KKGLLSLNTLV+SHNK+ SLS +GLGRLT+LTKLS+S+N L ++PDLS+CSGLEELRA       VPA+LSKN ALRTLDLGHNNIDDWVGLE  GE+L  L+QL+L+GNP+    ++ A+  G G E     Y+ K+RSLFPGLKVRDGKR+LMKKSHTYY+QR
Sbjct:   89 PQVTYLTAAGNELTGDGLDGVRPLKDLKVFNASGNRVRRIPPAVFAQFRQLQALVLSDNEISEVPPTWLKKGLLSLNTLVLSHNKLKSLSGTGLGRLTALTKLSISYNTLVELPDLSACSGLEELRAAHNIVTQVPASLSKNAALRTLDLGHNNIDDWVGLERLGESLKSLMQLSLSGNPICGAAAA-AEKRGTGEEDGEEDYVAKVRSLFPGLKVRDGKRILMKKSHTYYEQR 321          
BLAST of mRNA_H-elongata_contig51561.12424.1 vs. uniprot
Match: D7FIN7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN7_ECTSI)

HSP 1 Score: 292 bits (748), Expect = 1.120e-87
Identity = 149/215 (69.30%), Postives = 180/215 (83.72%), Query Frame = 1
Query:    1 PKVTYLTAAGNELTGEGLDGVRPLRDLKVFNASSNRVRRIPPSVFSQFRQLQALVLNNNEIGEVPPSWFKKGLLSLNTLVVSHNKINSLSASGLGRLTSLTKLSVSHNMLSDVPDLSSCSGLEELRAXXXXXXXVPATLSKNVALRTLDLGHNNIDDWVGLELAGETLTVLVQLTLAGNPLRDERSSDADTTGAGAEK----YLTKIRSLFPGLK 633
            P+VTYLTAA NELTG+GLDGVRPL+DLKVFNAS NRVRRIPP+VF+QFRQLQALVL++NEI EVPP+W K+GLLSLNTLV+SHNK+ SLS +GLGRLT+LTKLS+S+N L ++PDLS+CSGLEELRA       VPA+LSKN ALRTLDLGHN IDDWVGLE  G++L  L+QL+L+GNP+    ++ A+ +G G E     Y+ K+RSLFPGLK
Sbjct:   91 PQVTYLTAASNELTGDGLDGVRPLKDLKVFNASGNRVRRIPPAVFAQFRQLQALVLSDNEISEVPPTWLKQGLLSLNTLVLSHNKLKSLSGTGLGRLTALTKLSISYNTLVELPDLSACSGLEELRAAHNIVTQVPASLSKNAALRTLDLGHNRIDDWVGLERLGKSLKSLMQLSLSGNPICGAAAA-AEKSGTGEEDGEEGYVAKVRSLFPGLK 304          
BLAST of mRNA_H-elongata_contig51561.12424.1 vs. uniprot
Match: A0A835Z8M8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8M8_9STRA)

HSP 1 Score: 166 bits (421), Expect = 5.780e-40
Identity = 119/283 (42.05%), Postives = 150/283 (53.00%), Query Frame = 1
Query:    7 VTYLTAAGNELTGEGLDGVRPLRDLKVFNASSNRVRRIPPSVFSQFRQLQALVLNNNEIGEVPPSWFKKGLLS-LNTLVVSHNKINSLSASGLGRLTSLTK-------------------------------------------LSVSHNMLSDVPDLSSCSGLEELRAXXXXXXXVPATLSKNVALRTLDLGHNNIDDWVGLELAGETLTVLVQLTLAGNPL----------RDERSSDADTTGAGAEK-------YLTKIRSLFPGLKVRDGKRVLMKKSH 672
            VTYL    NELTGEGLDGVR L DL V NA+ N+++ +P +VF  FR LQ LVLN+N I  VP +W+KKG+ + LNTLV+SHN I SLS SGL +L  LTK                                           LS SHN LS++PDLS+C+       XXXXXXX P  LS+  ALR LDLGHN + +W  ++    T   LVQLTL G P+          +   + D     A  E+       Y +K++ LFP LK +DG+R L K SH
Sbjct:   69 VTYLKVDNNELTGEGLDGVRCLPDLNVLNAAHNQIKTVPAAVFGAFRGLQVLVLNDNAIAAVPRTWWKKGVAAALNTLVLSHNAIASLSDSGLDKLAMLTKRDAAAARRGAAMPSAAAAIITERSERCFYERCCGLDKFAMLTELSASHNQLSEMPDLSACAXXXXXXXXXXXXXXXPVWLSELAALRLLDLGHNAVSEWSEVKKL-TTAPALVQLTLRGCPISGVTSVPGEQQQHAAGDGAAPAAAVEEDAERVAEYESKMKKLFPKLKTQDGQRTLPKISH 350          
BLAST of mRNA_H-elongata_contig51561.12424.1 vs. uniprot
Match: A0A7S1XKR6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKR6_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.190e-33
Identity = 93/262 (35.50%), Postives = 136/262 (51.91%), Query Frame = 1
Query:    1 PKVTYLTAAGNELTGEGLDGVRPLRDLKVFNASSNRVRRIPPSVFSQFRQLQALVLNNNEIGEVPPSWFKKGLLSLNTLVVSHNKIN-SLSASGLGRLTSLTKLSVSHNMLSDVPDLSSCSG-LEELRAXXXXXXXVPATLSKNVALRTLDLGHNNIDDWVGLELAGETLTVLVQLTLAGNPL------------------------RDERSSDADTTGAGAEKYLTKIRSLFPGLKVRDGKRVLMKKSHTYYQQRAEGADA 708
            P +++L AA NELTGEGL G+  L  L   NA  N+++ IPP  F++ + L+ALVLN+NEI       F K L  L  LV+S N++   L+      L SL K++++ N + ++PDLS C+  L ELRA       VP TL +   L+ ++LG N I  W  L     +L  +  L+L GNP+                         +E  S+ D     A  Y+ K+R LFP L V DG+RV++K++H + +   E A A
Sbjct:    8 PLLSWLQAAENELTGEGLAGLHGLEALVTLNAGRNKIKAIPPGTFTRCKSLKALVLNDNEISATD---FLKKLKGLTVLVLSRNQLGPQLNPRHFAGLRSLMKINLAGNAIEELPDLSPCAETLVELRAANNALRGVPQTLRRCKKLKVVELGSNRISSWRALAPL-TSLERITHLSLKGNPICTWAAEAPEAPAAAPEDGSGEEPDTEEEESEDDKANKPATNYVDKVRELFPKLVVMDGQRVMLKRTHGFKKPEGENAGA 265          
BLAST of mRNA_H-elongata_contig51561.12424.1 vs. uniprot
Match: A0A2D4BR18_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BR18_PYTIN)

HSP 1 Score: 140 bits (353), Expect = 4.080e-32
Identity = 97/249 (38.96%), Postives = 132/249 (53.01%), Query Frame = 1
Query:    7 VTYLTAAGNELTGEGLDGVRPLRDLKVFNASSNRVRRIPPSVFSQFRQLQALVLNNNEIGEVPPSWFKKGLL---SLNTLVVSHNKINSLSASGLGRLTSLTKLSVSHNMLSDVPDLSSCSGLEELRAXXXXXXXVPATLSKNVALRTLDLGHNNIDDWVGLELAGETLTVLVQLTLAGNPLRDERSSDADTT------GAGAE----------------KYLTKIRSLFPGLKVRDGKRVLMKKSHTY 678
            +T L    N+L GEGL  +R L+ L   N + N V RIP  V     QL+ALVLNNN I  +   W  K  +    LN+L+VSHN+I  L+   + RL +LTK+S++HN+L ++PDLSS          X     VP +L++   L+ L+LGHN IDDW G+E   + L  L Q++L GNP+       + TT       A AE                +Y  K++ LFP L +RDG RVL KK H Y
Sbjct:   81 LTMLKLMENKLNGEGLAELRHLKKLVTLNIADNVVLRIPTDVLRHMSQLKALVLNNNSITTL--EWIPKLSVRGNQLNSLIVSHNRIPELAPRIVDRLPNLTKISMTHNLLEELPDLSSLKNXXXXXFSXNKLKTVPKSLAQLPKLKILELGHNEIDDWEGIEALSK-LDSLKQISLTGNPIYGVPLDASKTTETELKEDASAEDKAKMKEXXRLEAKHKQYNFKMKRLFPNLVIRDGHRVLNKKVHGY 326          
BLAST of mRNA_H-elongata_contig51561.12424.1 vs. uniprot
Match: A0A396ZVE2_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZVE2_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.050e-21
Identity = 84/268 (31.34%), Postives = 128/268 (47.76%), Query Frame = 1
Query:    7 VTYLTAAGNELTGEGLDGVRPLRDLKVFNASSNRVRRIPPSVFSQFRQLQALVLNNNEIGEVPPSWFKKGLLSLNTLVVSHNKINSLSASGLGRLTSLTKLSV----------------------SHNMLSDVPDLSSCSGLEELRAXXXXXXXVPATLSKNVALRTLDLGHNNIDDWVGLELAGETLTVLVQLTLAGNPL--------------RDERSSDADTTGAG-AEK---------YLTKIRSLFPGLKVRDGKRVLMKKSH 672
            +T L    N L   G+  +   + L   + S N++ R+P +       L+ALVL  N +  +   W    L  L +L+VSHN+I  +SA  +G+L  LTKL +                      SHN L+++PDLS+   L ELRA       +PA+++ NV L+ +D+ HN+ID + GL+    +L  L QL L GNP+                E+  DA  +    AE+         Y  K++ LFP L VRDG+R+  K++H
Sbjct:   83 LTQLKITSNVLVDAGIVDLSFCKQLVTLDLSDNKLARLPGASLRHCTGLRALVLTKNAMTSL--EWVPS-LPGLTSLIVSHNRITEISAKSIGKLKGLTKLQLYCTPPSILSMSLNQYGHYNYRSSHNKLTELPDLSALEQLTELRASNNQLTALPASINHNVNLKIVDVCHNHIDTFDGLD-QWTSLAQLKQLNLRGNPICGQNSTIPMELVDSAKEKEEDATVSQVDLAERKALDKKNKLYNFKMKRLFPALIVRDGQRIQDKRTH 346          
BLAST of mRNA_H-elongata_contig51561.12424.1 vs. uniprot
Match: A0A067C9B1_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C9B1_SAPPC)

HSP 1 Score: 106 bits (264), Expect = 7.000e-21
Identity = 77/232 (33.19%), Postives = 108/232 (46.55%), Query Frame = 1
Query:    7 VTYLTAAGNELTGEGLDGVRPLRDLKVFNASSNRVRRIPPSVFSQFRQLQALVLNNNEIGEVPPSWFKKGLLSLNTLVVSHNKINSLSASGLGRLTSLTKLSVSHNMLSDVPDLSSCSGLEELRAXXXXXXXVPATLSKNVALRTLDLGHNNIDDWVGLELAGETLTVLVQLTLAGNPLRDERSSDADTTGAGAEK--------YLTKIRSLFPGLKVRDGKRVLMKKSHTY 678
            +T L    N LT  G+  +   + L   +                      LVL  N I  +   W    +  L +L+VS N+I  +S   LG++ +L K+S+SHN L  +PD++  + L ELR        +PATL+ N  L+ LD  HN ID W G E  G +L  L QL L GNPL    +  A T     +K        Y  K++ LF  L +RDG RVL K++H Y
Sbjct:   70 LTQLKITSNLLTDSGVGDLSHCKALVTLDXXXXXXXXXXXXXXXXXXXXXXLVLTKNSITSL--DWLPS-MPQLTSLIVSQNRIGDISEKALGKVKNLVKISISHNKLKALPDMAVLADLSELRISNNQLTALPATLANNRNLKILDACHNAIDTWDGFENLG-SLKQLKQLNLKGNPLCGVAAEAATTEDEAGKKAADKKNKLYNFKMKRLFETLIIRDGHRVLEKRTHGY 297          
BLAST of mRNA_H-elongata_contig51561.12424.1 vs. uniprot
Match: A0A1V9ZQN7_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQN7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 3.040e-20
Identity = 82/236 (34.75%), Postives = 113/236 (47.88%), Query Frame = 1
Query:    7 VTYLTAAGNELTGEGLDGVRPLRDLKVFNASSNRVRRIPPSVFSQFRQLQALVLNNNEIGEVPPSWFKKGLLSLNTLVVSHNKINSLSASGLGRLTSLTKLSVSHNMLSDVPDLSSCSGLEELRAXXXXXXXVPATLSKNVALRTLDLGHNNIDDWVGLELAGETLTVLVQLTLAGNPLRDERSSDADTTGAGAEK------------YLTKIRSLFPGLKVRDGKRVLMKKSHTY 678
            +T L    N LT  G+  V   + L   + S N++ R+P +       L+ALVL NN I  +   W    +  L +L+VSHN+I+ +S   LG++               +PDL+    L     XXXXX  +P  L+KN  L+ +D  HN +D W GLE    +L  L QL L GNPL  +      T    AEK            Y  K++ LF GL VRDG RVL K++H Y
Sbjct:   68 LTQLKITSNLLTDSGVADVSFCKQLITLDLSDNKLSRLPGASLRHCTHLKALVLTNNAITTL--EWLPS-MAQLTSLIVSHNRISEISEKALGKVKGXXXXXXXXXXXXXLPDLAVLENLSXXXXXXXXXTALPENLAKNRNLKIIDACHNAVDTWDGLENLS-SLKNLKQLNLKGNPLCGQPLDPKSTIEDDAEKKEKKALDKKNKLYNFKMKRLFQGLIVRDGNRVLDKRTHGY 299          
BLAST of mRNA_H-elongata_contig51561.12424.1 vs. uniprot
Match: T0QV79_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QV79_SAPDV)

HSP 1 Score: 101 bits (252), Expect = 2.560e-19
Identity = 81/233 (34.76%), Postives = 115/233 (49.36%), Query Frame = 1
Query:    7 VTYLTAAGNELTGEGLDGVRPLRDLKVFNASSNRVRRIPPSVFSQFRQLQALVLNNNEIGEVPPSWFKKGLLSLNTLVVSHNKINSLSASGLGRLTSLTKLSVSHNMLSDVPDLSSCSGLEELRAXXXXXXXVPATLSKNVALRTLDLGHNNIDDWVGLELAGETLTVLVQLTLAGNPLRDERSSDADTTGAGAEK---------YLTKIRSLFPGLKVRDGKRVLMKKSHTY 678
            +T L    N LT  G+  +   + L                        +ALVL  N I  +   W    +  L +L+VS N+I  +S   LG++ +L K+S+SHN L  +PD+++ +       XXXX   +PATL+ N  L+ LD  HN ID W GLE  G +L  L QL L GNPL    +++A TT   AEK         Y  K++ +F  L +RDG RVL K++H Y
Sbjct:   88 LTQLKITSNLLTDSGVADLSYCKALVTLXXXXXXXXXXXXXXXXXXXXXKALVLTKNAITSL--DWLPS-MPQLTSLIVSQNRIGEISEKALGKVKNLVKISISHNKLKALPDMAALADXXXXXXXXXXLTALPATLANNRNLKILDACHNAIDTWDGLENLG-SLKQLKQLNLKGNPLCGV-AAEAATTEDEAEKKAADKKNKLYNFKMKRIFEALIIRDGHRVLEKRTHGY 315          
BLAST of mRNA_H-elongata_contig51561.12424.1 vs. uniprot
Match: A0A662XYI4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYI4_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.790e-19
Identity = 92/296 (31.08%), Postives = 125/296 (42.23%), Query Frame = 1
Query:    1 PKVTYLTAAGNELTGEGLDGVRPLRDLKVFNASSNRVRRIPPSVFSQFRQLQALVLNNNEIGE--------VPPSWFKKG------------------------LLSLNTLVVSHNKINSLSASGLGRLTSLTKLSVSHNMLSDVPDLSSCSGLEELRAXXXXXXXVPATLSKNVALRTLDLGHNNIDDWVGLELAGETLTVLVQLTLAGNPLRDER------SSDADTTG--------------------------------AGAEKYLTKIRSLFPGLKVRDGKRVLMKKSHTY 678
            P+VT L    N+L GEGL  ++ L+ L + NA+ N+V RIP  V    R L+ALVLNNN I          V  SW K                          +  LN+L+VSHN+I  +    L  L +LTK+S++H  +     LS  + +E L+                     L+L HN IDDW GLE A  +L  L QL + GNPL  ++      S D D                                   A  ++Y  K++ LFP L VRD +RVL K+ H Y
Sbjct:   80 PRVTMLKLTDNKLNGEGLAEIQHLKKLVILNAAENQVTRIPYEVMRNMRSLKALVLNNNSITTLDWMPKLPVCSSWLKNARNGSRSLCCRSKCVVNSFVCVPCNVQELNSLIVSHNRIAQIPQRILDWLPNLTKISIAHLCVL----LSILAAVENLKV--------------------LELSHNQIDDWAGLE-ALSSLENLRQLNMTGNPLVGQKLEVVKKSGDDDXXXXXXXXXXXDGESTKIELSAEEKQKLKESKRLDAKHKQYNFKMKRLFPNLVVRDAQRVLDKRVHGY 350          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51561.12424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5KE38_9PHAE1.430e-10372.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIN7_ECTSI1.120e-8769.30Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835Z8M8_9STRA5.780e-4042.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XKR6_9STRA1.190e-3335.50Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A2D4BR18_PYTIN4.080e-3238.96Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A396ZVE2_9STRA1.050e-2131.34Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A067C9B1_SAPPC7.000e-2133.19Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A1V9ZQN7_9STRA3.040e-2034.75Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
T0QV79_SAPDV2.560e-1934.76Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A662XYI4_9STRA2.790e-1931.08Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51561contigH-elongata_contig51561:274..3250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.7
Seed ortholog evalue1.1e-77
Seed eggNOG ortholog2880.D7FIN7
KEGG koko:K17579
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-27_000450.1
Exons4
Model size1653
Cds size1653
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51561.12424.1prot_H-elongata_contig51561.12424.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51561 274..3250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930843.4582002-CDS-H-elongata_contig51561:273..5281622930843.4582002-CDS-H-elongata_contig51561:273..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51561 274..528 +
1691679594.1133168-CDS-H-elongata_contig51561:273..5281691679594.1133168-CDS-H-elongata_contig51561:273..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51561 274..528 +
1622930843.4739807-CDS-H-elongata_contig51561:1108..12121622930843.4739807-CDS-H-elongata_contig51561:1108..1212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51561 1109..1212 +
1691679594.1278887-CDS-H-elongata_contig51561:1108..12121691679594.1278887-CDS-H-elongata_contig51561:1108..1212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51561 1109..1212 +
1622930843.490047-CDS-H-elongata_contig51561:1622..18251622930843.490047-CDS-H-elongata_contig51561:1622..1825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51561 1623..1825 +
1691679594.1370363-CDS-H-elongata_contig51561:1622..18251691679594.1370363-CDS-H-elongata_contig51561:1622..1825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51561 1623..1825 +
1622930843.5092964-CDS-H-elongata_contig51561:2159..32501622930843.5092964-CDS-H-elongata_contig51561:2159..3250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51561 2160..3250 +
1691679594.14539-CDS-H-elongata_contig51561:2159..32501691679594.14539-CDS-H-elongata_contig51561:2159..3250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51561 2160..3250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51561.12424.1

>prot_H-elongata_contig51561.12424.1 ID=prot_H-elongata_contig51561.12424.1|Name=mRNA_H-elongata_contig51561.12424.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=551bp
PKVTYLTAAGNELTGEGLDGVRPLRDLKVFNASSNRVRRIPPSVFSQFRQ
LQALVLNNNEIGEVPPSWFKKGLLSLNTLVVSHNKINSLSASGLGRLTSL
TKLSVSHNMLSDVPDLSSCSGLEELRAAHNRISQVPATLSKNVALRTLDL
GHNNIDDWVGLELAGETLTVLVQLTLAGNPLRDERSSDADTTGAGAEKYL
TKIRSLFPGLKVRDGKRVLMKKSHTYYQQRAEGADAAICLKKQPLPLRKK
KKKLPDARAANSNPGSTHFRDAGNGTVSDGADGSGLERKDIRRSKDAVTT
LASKECRGSGRETGGISQGDKVKTGKVERRVKEIGSTAGAGVVKGDGEGR
ERAENQDEVNAAFKTKVKKNRTRVEEESATDSSHGISGSDKIPQRTEEAA
AADGQGKRKKSERKKSSKRAKVVKVSREKNKLSVEAADAGRDDPYSSSEE
LLIPGRGEGHGKATVAAEGTIGSKERTIKPSGASDSGVKGVVLRQNRKGS
KTKFSKKAAARGESSGNGDGAGFSVDAMLKARGLRETFGLGVGSGMSSWD
*
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mRNA from alignment at H-elongata_contig51561:274..3250+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51561.12424.1 ID=mRNA_H-elongata_contig51561.12424.1|Name=mRNA_H-elongata_contig51561.12424.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2977bp|location=Sequence derived from alignment at H-elongata_contig51561:274..3250+ (Himanthalia elongata Himel1 dioecious)
CCGAAGGTGACGTATCTCACCGCCGCTGGCAACGAGCTGACCGGAGAAGG ACTGGACGGAGTGCGGCCACTGCGGGACCTCAAGGTTTTCAACGCCTCGA GCAACCGCGTGAGGCGCATCCCACCCTCTGTCTTCTCCCAGTTCCGGCAG CTGCAGGCGTTGGTGCTTAACAACAACGAGATTGGGGAGGTTCCTCCGAG CTGGTTCAAGAAGGGGCTACTGAGTCTCAACACCCTTGTTGTCAGCCATA ATAAGGTACCATGTAAAGCAGGAATTGCCAGAGCGCAGTAGTAGTACACA CGCTTCTGCTGAGAGCAAATCACCCTTGGTGGTGTGGGTGGAAATACTTT CTCGTGTGGCGTTTGCCGATCTTTTGCGAAGAAATTGGTGCTGGTAATTT TTTTTTGACTTCCCGAGAAGCGCTGGCCGTACATTGTGACGGCTTCCTTT CGCGGCAAATGCGAATTATACACGTAATATTTGTTTCACTCGGTTTGCCA TGCGTCTGGAGTGTTTAGCTGCGAGACGCGCGATTCACCGCGGGCCTACA CCACACCGCGGCACGGGTGAGCGACACGAAATAAATTTATCCATCCGCGA GAAGTGTTTTCGGAAGCGAAAATTTATTTTCCCTGTTTTCAGCTGACCAC GAGCAGAAGGCAACCAAATCCGGCTGATCCTTCTGCTATAAGTGAGACCA CCTCCGCCACCACCACCAACAACCTTAATATCGTCACGAATGTCCAACAA AAGTCACATATGAAATCGACAGTATTTTGAAGCACTCCCTGACCGATAAT GCGCACGATGAATCGCTTCGGCTGGGGCGCCGCAGATAAATTCCCTGTCG GCCTCAGGGTTGGGTCGACTAACGTCGCTGACCAAGCTCTCGGTGTCGCA TAACATGCTCTCGGACGTGCCCGACCTTTCGTCTTGCAGGTGAGGCGTTT TTTTTTGCGAATTTACGCACTTCAGTAGAACGAACAGTGAAGAAAAATGG TAAAATGTGTAAAAAGGGAGCCGTGCTGCGTCTTGTAATGCCCGTATTTG TGTCGCGCTGCGCTAAACCCCGTCTGGCACAGGGAGGCATAGGGAATCTC CCCCGTGGCAAGTCTTTTAAATAAAAATAATTACGGGCCAAGTAAAACAC ATAGACGGTCGTAATATCGCAGCCCATCCAGGGCCATACCACGCGCTTTA CTTTCAGCTCCCCCAGACTTTGTCCGTACTTTTATTATCCTTCTTAACTG TATGTCACGGCCGCAGATCGCTCGCTCCCTACCACCCACGTTCAGTTGCG TGTTACTCGCCCGCCGCCCCCCCCCCCCCCCCCGCCACCCCTGTAACAGT GGCCTCGAGGAGCTCCGAGCGGCGCACAACCGCATCTCTCAGGTGCCGGC GACGCTATCCAAAAACGTAGCCTTGCGCACGCTCGATCTGGGACACAACA ATATCGACGACTGGGTCGGGCTGGAGCTTGCCGGCGAGACTCTCACGGTT CTCGTGCAGCTTACTCTCGCGGGAAACCCTCTCCGTGATGAACGCTCTTC AGGTTCGCCCTACGTCTATACGGCAAAGGCGTACAGACGCTTGCTGAATC CCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCTCCC CTTGAAATATCGTATCGCATCACGTGGTATGATTTGATCAAGTCGTAGGA GTGAATAGGGCGCGTCGGGAATGGCGAGAGTGGAAATTCTTTGTGCCACC TCCGAAGCGCGTGTGTTTTGATTTTGTTCAGCCGATCGCAAACCTCTCCC CGCCCCCTTACCCCTCCCATGCTGCTTCGGCGCGCGGTGTGCAGGCGTCG ATACCTACGACGCGGGGGCTGACAAGGAGACGAAAGACGCGGATACGACA GGCGCGGGTGCAGAGAAATACCTCACCAAGATACGGTCCCTTTTCCCTGG CCTGAAGGTGAGGGACGGCAAGAGAGTCCTCATGAAGAAGAGTCATACGT ACTACCAGCAGCGCGCTGAAGGCGCGGACGCCGCGATTTGTTTGAAGAAG CAGCCGCTGCCGCTGCGGAAAAAGAAAAAGAAGCTACCCGACGCGCGGGC CGCAAATTCAAATCCGGGCAGCACGCATTTTCGGGACGCGGGAAACGGGA CTGTTTCTGACGGCGCGGATGGAAGCGGCCTTGAACGGAAGGACATCCGA CGGTCCAAAGACGCCGTCACAACTCTTGCTAGCAAAGAATGCAGAGGGTC TGGTAGAGAGACAGGAGGGATCTCGCAAGGGGATAAAGTAAAAACTGGTA AGGTAGAGCGTAGGGTAAAGGAGATCGGCAGTACAGCAGGGGCGGGAGTG GTAAAGGGTGACGGTGAAGGGAGGGAAAGAGCCGAAAACCAAGATGAGGT TAACGCCGCCTTTAAAACGAAGGTGAAAAAGAATCGTACGCGGGTTGAGG AGGAGAGCGCGACTGATAGCTCTCACGGGATCTCTGGAAGCGACAAAATT CCACAGCGAACCGAGGAAGCCGCCGCCGCTGACGGTCAAGGAAAACGGAA GAAGTCCGAGCGGAAAAAGTCTTCCAAGAGGGCGAAGGTAGTGAAGGTGT CACGCGAGAAGAACAAGCTGAGCGTCGAAGCAGCTGACGCCGGGAGAGAC GACCCTTACTCTTCCTCCGAGGAACTTCTAATTCCAGGACGAGGGGAAGG CCACGGGAAGGCTACGGTTGCCGCGGAAGGGACAATAGGCAGCAAGGAAA GGACCATCAAGCCATCGGGAGCTTCCGACTCCGGGGTGAAGGGGGTCGTG CTCCGCCAAAACCGGAAGGGATCGAAGACGAAGTTTTCCAAGAAGGCGGC GGCGCGAGGGGAATCGTCGGGTAATGGCGACGGAGCAGGCTTCAGCGTTG ATGCGATGCTTAAAGCGCGCGGTCTGAGGGAGACGTTTGGGCTAGGAGTT GGTTCCGGGATGTCATCCTGGGACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig51561:274..3250+

>mRNA_H-elongata_contig51561.12424.1 ID=mRNA_H-elongata_contig51561.12424.1|Name=mRNA_H-elongata_contig51561.12424.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3306bp|location=Sequence derived from alignment at H-elongata_contig51561:274..3250+ (Himanthalia elongata Himel1 dioecious)
CCGAAGGTGACGTATCTCACCGCCGCTGGCAACGAGCTGACCGGAGAAGG
ACTGGACGGAGTGCGGCCACTGCGGGACCTCAAGGTTTTCAACGCCTCGA
GCAACCGCGTGAGGCGCATCCCACCCTCTGTCTTCTCCCAGTTCCGGCAG
CTGCAGGCGTTGGTGCTTAACAACAACGAGATTGGGGAGGTTCCTCCGAG
CTGGTTCAAGAAGGGGCTACTGAGTCTCAACACCCTTGTTGTCAGCCATA
ATAAGCCGAAGGTGACGTATCTCACCGCCGCTGGCAACGAGCTGACCGGA
GAAGGACTGGACGGAGTGCGGCCACTGCGGGACCTCAAGGTTTTCAACGC
CTCGAGCAACCGCGTGAGGCGCATCCCACCCTCTGTCTTCTCCCAGTTCC
GGCAGCTGCAGGCGTTGGTGCTTAACAACAACGAGATTGGGGAGGTTCCT
CCGAGCTGGTTCAAGAAGGGGCTACTGAGTCTCAACACCCTTGTTGTCAG
CCATAATAAGATAAATTCCCTGTCGGCCTCAGGGTTGGGTCGACTAACGT
CGCTGACCAAGCTCTCGGTGTCGCATAACATGCTCTCGGACGTGCCCGAC
CTTTCGTCTTGCAGATAAATTCCCTGTCGGCCTCAGGGTTGGGTCGACTA
ACGTCGCTGACCAAGCTCTCGGTGTCGCATAACATGCTCTCGGACGTGCC
CGACCTTTCGTCTTGCAGTGGCCTCGAGGAGCTCCGAGCGGCGCACAACC
GCATCTCTCAGGTGCCGGCGACGCTATCCAAAAACGTAGCCTTGCGCACG
CTCGATCTGGGACACAACAATATCGACGACTGGGTCGGGCTGGAGCTTGC
CGGCGAGACTCTCACGGTTCTCGTGCAGCTTACTCTCGCGGGAAACCCTC
TCCGTGATGAACGCTCTTCAGTGGCCTCGAGGAGCTCCGAGCGGCGCACA
ACCGCATCTCTCAGGTGCCGGCGACGCTATCCAAAAACGTAGCCTTGCGC
ACGCTCGATCTGGGACACAACAATATCGACGACTGGGTCGGGCTGGAGCT
TGCCGGCGAGACTCTCACGGTTCTCGTGCAGCTTACTCTCGCGGGAAACC
CTCTCCGTGATGAACGCTCTTCAGACGCGGATACGACAGGCGCGGGTGCA
GAGAAATACCTCACCAAGATACGGTCCCTTTTCCCTGGCCTGAAGGTGAG
GGACGGCAAGAGAGTCCTCATGAAGAAGAGTCATACGTACTACCAGCAGC
GCGCTGAAGGCGCGGACGCCGCGATTTGTTTGAAGAAGCAGCCGCTGCCG
CTGCGGAAAAAGAAAAAGAAGCTACCCGACGCGCGGGCCGCAAATTCAAA
TCCGGGCAGCACGCATTTTCGGGACGCGGGAAACGGGACTGTTTCTGACG
GCGCGGATGGAAGCGGCCTTGAACGGAAGGACATCCGACGGTCCAAAGAC
GCCGTCACAACTCTTGCTAGCAAAGAATGCAGAGGGTCTGGTAGAGAGAC
AGGAGGGATCTCGCAAGGGGATAAAGTAAAAACTGGTAAGGTAGAGCGTA
GGGTAAAGGAGATCGGCAGTACAGCAGGGGCGGGAGTGGTAAAGGGTGAC
GGTGAAGGGAGGGAAAGAGCCGAAAACCAAGATGAGGTTAACGCCGCCTT
TAAAACGAAGGTGAAAAAGAATCGTACGCGGGTTGAGGAGGAGAGCGCGA
CTGATAGCTCTCACGGGATCTCTGGAAGCGACAAAATTCCACAGCGAACC
GAGGAAGCCGCCGCCGCTGACGGTCAAGGAAAACGGAAGAAGTCCGAGCG
GAAAAAGTCTTCCAAGAGGGCGAAGGTAGTGAAGGTGTCACGCGAGAAGA
ACAAGCTGAGCGTCGAAGCAGCTGACGCCGGGAGAGACGACCCTTACTCT
TCCTCCGAGGAACTTCTAATTCCAGGACGAGGGGAAGGCCACGGGAAGGC
TACGGTTGCCGCGGAAGGGACAATAGGCAGCAAGGAAAGGACCATCAAGC
CATCGGGAGCTTCCGACTCCGGGGTGAAGGGGGTCGTGCTCCGCCAAAAC
CGGAAGGGATCGAAGACGAAGTTTTCCAAGAAGGCGGCGGCGCGAGGGGA
ATCGTCGGGTAATGGCGACGGAGCAGGCTTCAGCGTTGATGCGATGCTTA
AAGCGCGCGGTCTGAGGGAGACGTTTGGGCTAGGAGTTGGTTCCGGGATG
TCATCCTGGGACTGAACGCGGATACGACAGGCGCGGGTGCAGAGAAATAC
CTCACCAAGATACGGTCCCTTTTCCCTGGCCTGAAGGTGAGGGACGGCAA
GAGAGTCCTCATGAAGAAGAGTCATACGTACTACCAGCAGCGCGCTGAAG
GCGCGGACGCCGCGATTTGTTTGAAGAAGCAGCCGCTGCCGCTGCGGAAA
AAGAAAAAGAAGCTACCCGACGCGCGGGCCGCAAATTCAAATCCGGGCAG
CACGCATTTTCGGGACGCGGGAAACGGGACTGTTTCTGACGGCGCGGATG
GAAGCGGCCTTGAACGGAAGGACATCCGACGGTCCAAAGACGCCGTCACA
ACTCTTGCTAGCAAAGAATGCAGAGGGTCTGGTAGAGAGACAGGAGGGAT
CTCGCAAGGGGATAAAGTAAAAACTGGTAAGGTAGAGCGTAGGGTAAAGG
AGATCGGCAGTACAGCAGGGGCGGGAGTGGTAAAGGGTGACGGTGAAGGG
AGGGAAAGAGCCGAAAACCAAGATGAGGTTAACGCCGCCTTTAAAACGAA
GGTGAAAAAGAATCGTACGCGGGTTGAGGAGGAGAGCGCGACTGATAGCT
CTCACGGGATCTCTGGAAGCGACAAAATTCCACAGCGAACCGAGGAAGCC
GCCGCCGCTGACGGTCAAGGAAAACGGAAGAAGTCCGAGCGGAAAAAGTC
TTCCAAGAGGGCGAAGGTAGTGAAGGTGTCACGCGAGAAGAACAAGCTGA
GCGTCGAAGCAGCTGACGCCGGGAGAGACGACCCTTACTCTTCCTCCGAG
GAACTTCTAATTCCAGGACGAGGGGAAGGCCACGGGAAGGCTACGGTTGC
CGCGGAAGGGACAATAGGCAGCAAGGAAAGGACCATCAAGCCATCGGGAG
CTTCCGACTCCGGGGTGAAGGGGGTCGTGCTCCGCCAAAACCGGAAGGGA
TCGAAGACGAAGTTTTCCAAGAAGGCGGCGGCGCGAGGGGAATCGTCGGG
TAATGGCGACGGAGCAGGCTTCAGCGTTGATGCGATGCTTAAAGCGCGCG
GTCTGAGGGAGACGTTTGGGCTAGGAGTTGGTTCCGGGATGTCATCCTGG
GACTGA
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