mRNA_H-elongata_contig51534.12417.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51534.12417.1
Unique NamemRNA_H-elongata_contig51534.12417.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: A0A6H5KF61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF61_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.020e-25
Identity = 44/71 (61.97%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    1 RFKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
            ++++ YP MYA++S+P+AV FNCYQRAHQN+LENYP F +L  LA++ RP +A +AGAIRL GFVAY  GY
Sbjct:   37 KYEIKYPQMYAEQSDPNAVIFNCYQRAHQNVLENYPSFLLLLGLAAINRPIVAGVAGAIRLAGFVAYVIGY 107          
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: D7FIN3_ECTSI (Microsomal Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN3_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.250e-24
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 RFKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
            ++ + YP MYAD+S+ + V FNCYQRAHQN+LENYP F +L  LA++ RP IA +AGA+RL GFVAY  GY
Sbjct:   37 KYGIKYPQMYADQSDANGVIFNCYQRAHQNVLENYPSFLLLLGLAAINRPTIAGVAGAVRLAGFVAYVIGY 107          
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: D7FIN2_ECTSI (Microsomal Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN2_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 6.720e-24
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 RFKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
            ++ + YP MYA++SNP+A  FNCYQRAHQN+LENYPQF +L  LA++ RP  AA+AGAIR+ GF+ Y   Y
Sbjct:   37 KYGIKYPQMYAEQSNPNAAVFNCYQRAHQNVLENYPQFLLLLGLAAINRPKFAAVAGAIRVAGFIVYVITY 107          
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: A0A835Z1D6_9STRA (Microsomal glutathione S-transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1D6_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 8.370e-21
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 RFKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
            ++ V YP MYA+ S+  +  FNC QRAHQNILENYP F +L A+ S  RPA+AA  GA+RL GF++Y +GY
Sbjct:   41 KYNVPYPQMYAETSHAHSTQFNCVQRAHQNILENYPPFLMLLAVGSTYRPALAAAFGALRLFGFISYYKGY 111          
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: A0A8J2PGC8_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2PGC8_9HEXA)

HSP 1 Score: 87.4 bits (215), Expect = 1.800e-20
Identity = 43/70 (61.43%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    4 FKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
            FKVDYP MY+DKS      FNCYQRAHQN LENYPQF VL  LA +  P ++ALAG + + G V YA GY
Sbjct:   39 FKVDYPAMYSDKS----AHFNCYQRAHQNTLENYPQFLVLLLLAGIEMPCVSALAGLVFIAGRVVYALGY 104          
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: K3WGK6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGK6_GLOUD)

HSP 1 Score: 86.7 bits (213), Expect = 4.200e-20
Identity = 37/71 (52.11%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    1 RFKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
            ++ ++YP MYA++S+ +A +FNC QRAHQN++EN P F  L  +++V RP IAA+AG +R++GF+AY RGY
Sbjct:   37 KYNIEYPQMYAEQSDKNAKAFNCVQRAHQNMVENLPIFFALLFVSAVFRPGIAAIAGFVRILGFIAYVRGY 107          
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: A0A024ULQ9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024ULQ9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.110e-20
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 RFKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
            +F ++YP MYA+KS+     FNCYQRAHQN+LEN P F  L  ++SV RP  AA+AG +R++GFV Y  GY
Sbjct:   39 KFNINYPQMYAEKSDEHCHEFNCYQRAHQNVLENLPVFLALLFVSSVYRPTWAAIAGFVRVVGFVVYVIGY 109          
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: A0A6A3NJC4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3NJC4_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.260e-19
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    4 FKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
            + V+YP MYA++S+ +A +FNC QR HQNI+EN P F  L   ++V RP IAA+AG +R++GF+AY RGY
Sbjct:   40 YGVEYPQMYAEQSDKNAKAFNCVQRGHQNIMENVPLFLALLFTSAVYRPQIAAIAGLVRILGFIAYMRGY 109          
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: H3GBW9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GBW9_PHYRM)

HSP 1 Score: 85.5 bits (210), Expect = 1.320e-19
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 RFKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
            +F V YP MYA K + +A +FNC QRAHQN+LEN P F  + A +S+ RP IAA+AG +R+ GFV Y +GY
Sbjct:   41 QFNVPYPQMYAAKKDKNANAFNCVQRAHQNVLENLPLFYAMLATSSIYRPTIAAVAGVVRIAGFVMYVKGY 111          
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: A0A833SF93_PHYIN (MAPEG domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SF93_PHYIN)

HSP 1 Score: 85.5 bits (210), Expect = 1.390e-19
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 RFKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
            ++ VDYP MYA+KS  +A +FNC QR HQNI+EN P F  LF  +++ RP +A  AG +R++GFV Y RGY
Sbjct:   39 KYGVDYPQMYAEKSEKNAKAFNCVQRGHQNIVENIPSFVGLFFTSALYRPQVATAAGLVRILGFVVYMRGY 109          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF61_9PHAE1.020e-2561.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIN3_ECTSI3.250e-2460.56Microsomal Glutathione S-transferase n=1 Tax=Ectoc... [more]
D7FIN2_ECTSI6.720e-2459.15Microsomal Glutathione S-transferase n=1 Tax=Ectoc... [more]
A0A835Z1D6_9STRA8.370e-2156.34Microsomal glutathione S-transferase n=1 Tax=Tribo... [more]
A0A8J2PGC8_9HEXA1.800e-2061.43Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
K3WGK6_GLOUD4.200e-2052.11Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A024ULQ9_9STRA6.110e-2054.93Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6A3NJC4_9STRA1.260e-1954.29Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
H3GBW9_PHYRM1.320e-1954.93Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A833SF93_PHYIN1.390e-1953.52MAPEG domain-containing protein n=1 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51534contigH-elongata_contig51534:676..1717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog2880.D7FIN2
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
EggNOG free text desc.leukotriene-C4 synthase activity
EggNOG OGs2CUIV@1,2S4E5@2759
EC2.5.1.18
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51534.12417.1prot_H-elongata_contig51534.12417.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51534 700..1717 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930842.8196654-UTR-H-elongata_contig51534:675..6991622930842.8196654-UTR-H-elongata_contig51534:675..699Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51534 676..699 +
1691679593.9248936-UTR-H-elongata_contig51534:675..6991691679593.9248936-UTR-H-elongata_contig51534:675..699Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51534 676..699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930842.8420494-CDS-H-elongata_contig51534:699..7621622930842.8420494-CDS-H-elongata_contig51534:699..762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51534 700..762 +
1691679593.9361055-CDS-H-elongata_contig51534:699..7621691679593.9361055-CDS-H-elongata_contig51534:699..762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51534 700..762 +
1622930842.866364-CDS-H-elongata_contig51534:1591..17171622930842.866364-CDS-H-elongata_contig51534:1591..1717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51534 1592..1717 +
1691679593.9444268-CDS-H-elongata_contig51534:1591..17171691679593.9444268-CDS-H-elongata_contig51534:1591..1717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51534 1592..1717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51534.12417.1

>prot_H-elongata_contig51534.12417.1 ID=prot_H-elongata_contig51534.12417.1|Name=mRNA_H-elongata_contig51534.12417.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGA
IRLIGFVAYARGY
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mRNA from alignment at H-elongata_contig51534:676..1717+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51534.12417.1 ID=mRNA_H-elongata_contig51534.12417.1|Name=mRNA_H-elongata_contig51534.12417.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1042bp|location=Sequence derived from alignment at H-elongata_contig51534:676..1717+ (Himanthalia elongata Himel1 dioecious)
AGGTTCAAGGTAGATTATCCTACCATGTACGCCGACAAGTCCAACCCCGA CGCCGTTTCCTTCAACTGCTACCAGAGGGCTCACCAGGTACGTGCGTAAC TTCCCGCTGTGGGACGAAGCTTTCCCCACGACAACGCGTAGGCTGTGGAT GATCGCTCCGAGCGCTTGACCGCGTCTTCGCTCACCGCGACACTCTTTAG CCGAAGGCGTAACTTACGCGGGGAGGTCATCCACCATCTTGAGAAGAGCC GATGTCTTGGTTTAGCAGCAGCCTGCCTGTTCTCGACGTGCTCGACAGCG TAGTGTGTGTCTGAAGCACCACGAACTCGTGATTGTAATTTATTAAGTAC TACACCAAAATGAGAGGATATTACCCTCTTCTCGTCTTACATGTAAGTAT ATATATATATATATAGTATCAACAAAAGTGTAAACAGCGCAGTAGGCAGC AACTTGCAAAAGGGGAGTCGTATCGCAGGAATATCGAAAATGGAGAACGG TATAAACTACGACGTGCCGAGATAAAAGCTCCACGCAGACCCAACCGCGA GGGGGGCGGTGTTGTTGGGCTGCGCGGTGCGCTCAATGTCATAAAGCACA AAAATAAACATGTGGCTGACTGCGACTCGACTTAATATGAAAGGGCAACG ATCGCTGGCGATGGAGCCACAATAATGCTTCCATTCACAACATGGTGGCA TCGGCGAAGCACCTTATCAGCCTGATCCCTTGGCGAACATGCTGCTTCCG AGTGGGGAGCGTGTTAACCCGCATTCTCAAACGGCTGCGTAGCAGCTTCG TGGCTGGTTACTTACAGGGGCGACACGAGGGTAATCGGTGGCGCAAGATG CCACCAGTGGCGCAAGACGTCCTCACCGACCGCCCTACTCCGCCCTCGAT ACGCTCTCATTCGCAGAACATCCTGGAGAACTATCCTCAGTTTACCGTCC TCTTCGCCCTGGCTTCGGTGCGCCGCCCCGCCATTGCCGCGCTCGCCGGC GCGATTCGCCTGATCGGCTTCGTTGCCTACGCTCGCGGGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig51534:676..1717+

>mRNA_H-elongata_contig51534.12417.1 ID=mRNA_H-elongata_contig51534.12417.1|Name=mRNA_H-elongata_contig51534.12417.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig51534:676..1717+ (Himanthalia elongata Himel1 dioecious)
ATGTACGCCGACAAGTCCAACCCCGACGCCGTTTCCTTCAACTGCTACCA
GAGGGCTCACCAGATGTACGCCGACAAGTCCAACCCCGACGCCGTTTCCT
TCAACTGCTACCAGAGGGCTCACCAGAACATCCTGGAGAACTATCCTCAG
TTTACCGTCCTCTTCGCCCTGGCTTCGGTGCGCCGCCCCGCCATTGCCGC
GCTCGCCGGCGCGATTCGCCTGATCGGCTTCGTTGCCTACGCTCGCGGGT
ACAACATCCTGGAGAACTATCCTCAGTTTACCGTCCTCTTCGCCCTGGCT
TCGGTGCGCCGCCCCGCCATTGCCGCGCTCGCCGGCGCGATTCGCCTGAT
CGGCTTCGTTGCCTACGCTCGCGGGTAC
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