mRNA_H-elongata_contig51534.12417.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: A0A6H5KF61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF61_9PHAE) HSP 1 Score: 100 bits (250), Expect = 1.020e-25 Identity = 44/71 (61.97%), Postives = 58/71 (81.69%), Query Frame = 1
Query: 1 RFKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
++++ YP MYA++S+P+AV FNCYQRAHQN+LENYP F +L LA++ RP +A +AGAIRL GFVAY GY
Sbjct: 37 KYEIKYPQMYAEQSDPNAVIFNCYQRAHQNVLENYPSFLLLLGLAAINRPIVAGVAGAIRLAGFVAYVIGY 107
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: D7FIN3_ECTSI (Microsomal Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN3_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 3.250e-24 Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1
Query: 1 RFKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
++ + YP MYAD+S+ + V FNCYQRAHQN+LENYP F +L LA++ RP IA +AGA+RL GFVAY GY
Sbjct: 37 KYGIKYPQMYADQSDANGVIFNCYQRAHQNVLENYPSFLLLLGLAAINRPTIAGVAGAVRLAGFVAYVIGY 107
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: D7FIN2_ECTSI (Microsomal Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN2_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 6.720e-24 Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 1
Query: 1 RFKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
++ + YP MYA++SNP+A FNCYQRAHQN+LENYPQF +L LA++ RP AA+AGAIR+ GF+ Y Y
Sbjct: 37 KYGIKYPQMYAEQSNPNAAVFNCYQRAHQNVLENYPQFLLLLGLAAINRPKFAAVAGAIRVAGFIVYVITY 107
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: A0A835Z1D6_9STRA (Microsomal glutathione S-transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1D6_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 8.370e-21 Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 1 RFKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
++ V YP MYA+ S+ + FNC QRAHQNILENYP F +L A+ S RPA+AA GA+RL GF++Y +GY
Sbjct: 41 KYNVPYPQMYAETSHAHSTQFNCVQRAHQNILENYPPFLMLLAVGSTYRPALAAAFGALRLFGFISYYKGY 111
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: A0A8J2PGC8_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2PGC8_9HEXA) HSP 1 Score: 87.4 bits (215), Expect = 1.800e-20 Identity = 43/70 (61.43%), Postives = 49/70 (70.00%), Query Frame = 1
Query: 4 FKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
FKVDYP MY+DKS FNCYQRAHQN LENYPQF VL LA + P ++ALAG + + G V YA GY
Sbjct: 39 FKVDYPAMYSDKS----AHFNCYQRAHQNTLENYPQFLVLLLLAGIEMPCVSALAGLVFIAGRVVYALGY 104
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: K3WGK6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGK6_GLOUD) HSP 1 Score: 86.7 bits (213), Expect = 4.200e-20 Identity = 37/71 (52.11%), Postives = 56/71 (78.87%), Query Frame = 1
Query: 1 RFKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
++ ++YP MYA++S+ +A +FNC QRAHQN++EN P F L +++V RP IAA+AG +R++GF+AY RGY
Sbjct: 37 KYNIEYPQMYAEQSDKNAKAFNCVQRAHQNMVENLPIFFALLFVSAVFRPGIAAIAGFVRILGFIAYVRGY 107
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: A0A024ULQ9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024ULQ9_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 6.110e-20 Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 1 RFKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
+F ++YP MYA+KS+ FNCYQRAHQN+LEN P F L ++SV RP AA+AG +R++GFV Y GY
Sbjct: 39 KFNINYPQMYAEKSDEHCHEFNCYQRAHQNVLENLPVFLALLFVSSVYRPTWAAIAGFVRVVGFVVYVIGY 109
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: A0A6A3NJC4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3NJC4_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.260e-19 Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 1
Query: 4 FKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
+ V+YP MYA++S+ +A +FNC QR HQNI+EN P F L ++V RP IAA+AG +R++GF+AY RGY
Sbjct: 40 YGVEYPQMYAEQSDKNAKAFNCVQRGHQNIMENVPLFLALLFTSAVYRPQIAAIAGLVRILGFIAYMRGY 109
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: H3GBW9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GBW9_PHYRM) HSP 1 Score: 85.5 bits (210), Expect = 1.320e-19 Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 1 RFKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
+F V YP MYA K + +A +FNC QRAHQN+LEN P F + A +S+ RP IAA+AG +R+ GFV Y +GY
Sbjct: 41 QFNVPYPQMYAAKKDKNANAFNCVQRAHQNVLENLPLFYAMLATSSIYRPTIAAVAGVVRIAGFVMYVKGY 111
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Match: A0A833SF93_PHYIN (MAPEG domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SF93_PHYIN) HSP 1 Score: 85.5 bits (210), Expect = 1.390e-19 Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 1 RFKVDYPTMYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAIRLIGFVAYARGY 213
++ VDYP MYA+KS +A +FNC QR HQNI+EN P F LF +++ RP +A AG +R++GFV Y RGY
Sbjct: 39 KYGVDYPQMYAEKSEKNAKAFNCVQRGHQNIVENIPSFVGLFFTSALYRPQVATAAGLVRILGFVVYMRGY 109 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51534.12417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51534.12417.1 >prot_H-elongata_contig51534.12417.1 ID=prot_H-elongata_contig51534.12417.1|Name=mRNA_H-elongata_contig51534.12417.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp MYADKSNPDAVSFNCYQRAHQNILENYPQFTVLFALASVRRPAIAALAGAback to top mRNA from alignment at H-elongata_contig51534:676..1717+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51534.12417.1 ID=mRNA_H-elongata_contig51534.12417.1|Name=mRNA_H-elongata_contig51534.12417.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1042bp|location=Sequence derived from alignment at H-elongata_contig51534:676..1717+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51534:676..1717+ >mRNA_H-elongata_contig51534.12417.1 ID=mRNA_H-elongata_contig51534.12417.1|Name=mRNA_H-elongata_contig51534.12417.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig51534:676..1717+ (Himanthalia elongata Himel1 dioecious)back to top |