mRNA_H-elongata_contig51409.12403.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51409.12403.1
Unique NamemRNA_H-elongata_contig51409.12403.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51409.12403.1 vs. uniprot
Match: D7FHF8_ECTSI (Ribonuclease HI n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHF8_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 8.780e-20
Identity = 68/174 (39.08%), Postives = 90/174 (51.72%), Query Frame = 1 
Query:    1 TPLRMTSNLTKTAISTMGVKGLMEELQKRGLDAAGTRPVLQDRLRQAAGFERVRRVRSSVPPRRRRSRANHGLGGGMKSGNKIGNSVDLGCGVGTLGAAEMRASVSSRALGPAANDPSELPRATRSSAYVLQFDGGSRGNPGPSGAGAVLYSRMDGDGGREEVWCTSGWVGQAR 522
            T +RM + +++TAI+ M V  L EEL  RGLD  G RPVLQ RL +A   E  + V      R R +        G  +      S           +  +R     R +  ++  P       RS+ ++LQFDGGSRGNPGPSG GAVLY R+D  G REEVW +S W+G+ R
Sbjct:   60 TGVRMGAAISRTAIAKMRVAELREELASRGLDNTGIRPVLQGRLIEAKETEWAQAVIDRSRQRERSNTTEPPRAAGTTAPPGPARSQVATSQAARTPSPRIRQQQQQRGISTSSTKPGRQ----RSTTHLLQFDGGSRGNPGPSGCGAVLY-RLDESGEREEVWSSSVWIGEKR 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51409.12403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHF8_ECTSI8.780e-2039.08Ribonuclease HI n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51409contigH-elongata_contig51409:2658..4060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue3.3e-17
Seed eggNOG ortholog2880.D7FHF8
EggNOG free text desc.RNase H
EggNOG OGs2S89Z@2759,COG0328@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibonuclease H-like domain
Ec32 orthologEc-25_002560.1
Exons3
Model size522
Cds size510
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51409.12403.1prot_H-elongata_contig51409.12403.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51409 2670..4060 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930841.4135828-UTR-H-elongata_contig51409:2657..26691622930841.4135828-UTR-H-elongata_contig51409:2657..2669Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51409 2658..2669 +
1691679593.2829857-UTR-H-elongata_contig51409:2657..26691691679593.2829857-UTR-H-elongata_contig51409:2657..2669Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51409 2658..2669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930841.4258378-CDS-H-elongata_contig51409:2669..27961622930841.4258378-CDS-H-elongata_contig51409:2669..2796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51409 2670..2796 +
1691679593.2925146-CDS-H-elongata_contig51409:2669..27961691679593.2925146-CDS-H-elongata_contig51409:2669..2796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51409 2670..2796 +
1622930841.4371383-CDS-H-elongata_contig51409:3321..36371622930841.4371383-CDS-H-elongata_contig51409:3321..3637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51409 3322..3637 +
1691679593.3004355-CDS-H-elongata_contig51409:3321..36371691679593.3004355-CDS-H-elongata_contig51409:3321..3637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51409 3322..3637 +
1622930841.4503891-CDS-H-elongata_contig51409:3993..40601622930841.4503891-CDS-H-elongata_contig51409:3993..4060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51409 3994..4060 +
1691679593.3093226-CDS-H-elongata_contig51409:3993..40601691679593.3093226-CDS-H-elongata_contig51409:3993..4060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51409 3994..4060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51409.12403.1

>prot_H-elongata_contig51409.12403.1 ID=prot_H-elongata_contig51409.12403.1|Name=mRNA_H-elongata_contig51409.12403.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
MTSNLTKTAISTMGVKGLMEELQKRGLDAAGTRPVLQDRLRQAAGFERVR
RVRSSVPPRRRRSRANHGLGGGMKSGNKIGNSVDLGCGVGTLGAAEMRAS
VSSRALGPAANDPSELPRATRSSAYVLQFDGGSRGNPGPSGAGAVLYSRM
DGDGGREEVWCTSGWVGQAR
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mRNA from alignment at H-elongata_contig51409:2658..4060+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51409.12403.1 ID=mRNA_H-elongata_contig51409.12403.1|Name=mRNA_H-elongata_contig51409.12403.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1403bp|location=Sequence derived from alignment at H-elongata_contig51409:2658..4060+ (Himanthalia elongata Himel1 dioecious)
ACTCCGCTACGCATGACGTCGAATCTCACGAAGACGGCGATCTCGACGAT
GGGCGTAAAGGGTCTCATGGAGGAGCTGCAGAAACGAGGCCTTGACGCGG
CGGGAACGCGACCAGTCTTGCAGGACCGATTGCGCCAAGGTAGGACCGAT
TGCGCCAAGGTGAAGGGCAGGACGCATGTGCCCCCCCCCCACTCCCTCTC
CTCCGATCGTGATTGCTTTTGTGATAACCTGTCCGGCGAGGCCGGCGACG
CGAGCTGTCGTCGGACGCGGATCCTGCGAGCGCACAAAACGTCTCTGGTA
ACTTCATAATCTTCAATCATCGACCCCAACCCTTTTTCTTGCTATACATT
TTCATGCTTTTGTAAGCTTTTGTGTCCTGTTGCATTATGTCTCACGAAAT
TGCTTGCTTCTCTGCATAAGTAAATACATGCTCCACTATCCCGAGGGCGC
GTGTGGTCAATGCTCTAACAGGCAAAGATGAAAAAAATGAGTAACATCCC
CCCCCCCCCTCTGCAGTGCCCTGCGCGCTGTTGCTGCAACGGAAATCAGG
AAATCCCCTTTTGCTCATTACTTTTGTTCGTTCTTCCGTTCGTTCGTTTC
CGTATTTCTTGGCGGTGCGGTCCGTCAACGGGGGGGTGGCATATGTTGGT
CTTCCTGCCGCCAGCCGCGGGATTCGAACGCGTGCGGCGGGTGCGATCAT
CAGTCCCGCCTCGACGACGACGATCGCGCGCCAACCACGGCCTTGGCGGC
GGCATGAAGAGCGGCAACAAAATTGGCAATAGCGTTGATCTTGGCTGTGG
TGTCGGGACCCTCGGCGCTGCTGAAATGCGAGCGTCGGTGTCCTCGCGCG
CACTGGGACCCGCGGCGAACGATCCGTCGGAGCTTCCGCGCGCAACCCGG
TCGTCCGCGTACGTGCTGCAGTTCGATGGGGGATCGAGAGGAAACCCGGG
GCCGAGCGGGGCCGGTGCCGTCCTTTACAGGTGCGTGACGCGCCGCCTCT
ACACGCGACAATGCCCCCCCCCCCATTTCCCTTCAAGCCGTCATCTCCGT
AACGGCGTATGACCAAGTAACTGTTCACGCCGCCGAGCTGTATCCCGCTT
ACGGGTAGATGGTCATACATATGTTTCCTTTTTTCCCTCTTCCGACCGCC
TCGCAATACTAAACAACAATGTACGATACTATACTATACTATGCACGACA
TGTAGTGGTCGAGAAAACTTGACTCGACCGCAACGCATCAGTTCGGCTTG
GCTGTCTTGGTCATGGTTGGTAAAAAGCGTTTGCTCTTTGTTGCGGTCGC
TCCCACCTCCCACCCCCCACCCCCATATGCAACCAGCAGAATGGATGGAG
ATGGGGGTCGCGAAGAAGTGTGGTGCACGAGCGGTTGGGTGGGACAAGCG
CGC
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Coding sequence (CDS) from alignment at H-elongata_contig51409:2658..4060+

>mRNA_H-elongata_contig51409.12403.1 ID=mRNA_H-elongata_contig51409.12403.1|Name=mRNA_H-elongata_contig51409.12403.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig51409:2658..4060+ (Himanthalia elongata Himel1 dioecious)
ATGACGTCGAATCTCACGAAGACGGCGATCTCGACGATGGGCGTAAAGGG
TCTCATGGAGGAGCTGCAGAAACGAGGCCTTGACGCGGCGGGAACGCGAC
CAGTCTTGCAGGACCGATTGCGCCAAGATGACGTCGAATCTCACGAAGAC
GGCGATCTCGACGATGGGCGTAAAGGGTCTCATGGAGGAGCTGCAGAAAC
GAGGCCTTGACGCGGCGGGAACGCGACCAGTCTTGCAGGACCGATTGCGC
CAAGCCGCGGGATTCGAACGCGTGCGGCGGGTGCGATCATCAGTCCCGCC
TCGACGACGACGATCGCGCGCCAACCACGGCCTTGGCGGCGGCATGAAGA
GCGGCAACAAAATTGGCAATAGCGTTGATCTTGGCTGTGGTGTCGGGACC
CTCGGCGCTGCTGAAATGCGAGCGTCGGTGTCCTCGCGCGCACTGGGACC
CGCGGCGAACGATCCGTCGGAGCTTCCGCGCGCAACCCGGTCGTCCGCGT
ACGTGCTGCAGTTCGATGGGGGATCGAGAGGAAACCCGGGGCCGAGCGGG
GCCGGTGCCGTCCTTTACAGCCGCGGGATTCGAACGCGTGCGGCGGGTGC
GATCATCAGTCCCGCCTCGACGACGACGATCGCGCGCCAACCACGGCCTT
GGCGGCGGCATGAAGAGCGGCAACAAAATTGGCAATAGCGTTGATCTTGG
CTGTGGTGTCGGGACCCTCGGCGCTGCTGAAATGCGAGCGTCGGTGTCCT
CGCGCGCACTGGGACCCGCGGCGAACGATCCGTCGGAGCTTCCGCGCGCA
ACCCGGTCGTCCGCGTACGTGCTGCAGTTCGATGGGGGATCGAGAGGAAA
CCCGGGGCCGAGCGGGGCCGGTGCCGTCCTTTACAGCAGAATGGATGGAG
ATGGGGGTCGCGAAGAAGTGTGGTGCACGAGCGGTTGGGTGGGACAAGCG
CGCCAGAATGGATGGAGATGGGGGTCGCGAAGAAGTGTGGTGCACGAGCG
GTTGGGTGGGACAAGCGCGC
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