prot_H-elongata_contig51409.12403.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig51409.12403.1
Unique Nameprot_H-elongata_contig51409.12403.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length170
Homology
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BLAST of mRNA_H-elongata_contig51409.12403.1 vs. uniprot
Match: D7FHF8_ECTSI (Ribonuclease HI n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHF8_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 7.640e-19
Identity = 66/170 (38.82%), Postives = 87/170 (51.18%), Query Frame = 0 
Query:    1 MTSNLTKTAISTMGVKGLMEELQKRGLDAAGTRPVLQDRLRQAAGFERVRRVRSSVPPRRRRSRANHGLGGGMKSGNKIGNSVDLGCGVGTLGAAEMRASVSSRALGPAANDPSELPRATRSSAYVLQFDGGSRGNPGPSGAGAVLYSRMDGDGGREEVWCTSGWVGQAR 170
            M + +++TAI+ M V  L EEL  RGLD  G RPVLQ RL +A   E  + V      R R +        G  +      S           +  +R     R +  ++  P       RS+ ++LQFDGGSRGNPGPSG GAVLY R+D  G REEVW +S W+G+ R
Sbjct:   64 MGAAISRTAIAKMRVAELREELASRGLDNTGIRPVLQGRLIEAKETEWAQAVIDRSRQRERSNTTEPPRAAGTTAPPGPARSQVATSQAARTPSPRIRQQQQQRGISTSSTKPGRQ----RSTTHLLQFDGGSRGNPGPSGCGAVLY-RLDESGEREEVWSSSVWIGEKR 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51409.12403.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHF8_ECTSI7.640e-1938.82Ribonuclease HI n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003034SAP domainSMARTSM00513sap_9coord: 10..44
e-value: 8.5E-5
score: 31.9
IPR003034SAP domainPROSITEPS50800SAPcoord: 10..44
score: 9.327
IPR036361SAP domain superfamilyGENE3D1.10.720.30coord: 2..54
e-value: 4.4E-6
score: 28.1
IPR036361SAP domain superfamilySUPERFAMILY68906SAP domaincoord: 9..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51409contigH-elongata_contig51409:2670..4060 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51409.12403.1mRNA_H-elongata_contig51409.12403.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig51409 2658..4060 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig51409.12403.1 ID=prot_H-elongata_contig51409.12403.1|Name=mRNA_H-elongata_contig51409.12403.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
MTSNLTKTAISTMGVKGLMEELQKRGLDAAGTRPVLQDRLRQAAGFERVR
RVRSSVPPRRRRSRANHGLGGGMKSGNKIGNSVDLGCGVGTLGAAEMRAS
VSSRALGPAANDPSELPRATRSSAYVLQFDGGSRGNPGPSGAGAVLYSRM
DGDGGREEVWCTSGWVGQAR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
IPR036361SAP_dom_sf