mRNA_H-elongata_contig51386.12400.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51386.12400.1
Unique NamemRNA_H-elongata_contig51386.12400.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51386.12400.1 vs. uniprot
Match: D8LU44_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU44_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.880e-41
Identity = 77/153 (50.33%), Postives = 103/153 (67.32%), Query Frame = 1 
Query:    7 QVILGQWKEDDGSAAGCSNFGRYLDNPRYFATVTSSTRLLMRLAIPEEAGPFPSGRPAINVSLFSAGSTGRGREEA-------------------TEWTPASTLAIASSSKGVYLDSSGGSVTDAVELAAGDYIAIVSTYSPQAADYVLTVYS 408
            QV+ G+W++DDG+AAGC NFGRYLDNPRY  TV S   +L+R+ IPE AGPFP GRPA+N++LF     G G   A                    +  P S LAIASS+ GVY+DSS G+VT++VE+ AG+Y+A+VS++ PQ ADY +T+Y+
Sbjct:  380 QVVRGRWRQDDGTAAGCGNFGRYLDNPRYLFTVPSRASILLRVVIPENAGPFPEGRPAVNITLFPTTREGGGDSTAGPPEDTGGMHRGVGRISLNPKCQPTSNLAIASSNGGVYMDSSAGAVTESVEVEAGEYVAVVSSFRPQKADYEITIYT 532
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BLAST of mRNA_H-elongata_contig51386.12400.1 vs. uniprot
Match: A0A6H5KS09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS09_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.890e-26
Identity = 59/126 (46.83%), Postives = 82/126 (65.08%), Query Frame = 1 
Query:   88 RYFATVTSSTRLLMRLAIPEEAGPFPSGRPAINVSLF-----SAGSTGRGREEAT--------------EWTPASTLAIASSSKGVYLDSSGGSVTDAVELAAGDYIAIVSTYSPQAADYVLTVYS 408
            RY  TV S   +L+R+ IPE AGPFP GRPA+N++LF      AG++  G  E T              +  P S LAIASS+ GVY+DSS G+VT++VE+ AG+Y+A+VS++ PQ ADY +T+Y+
Sbjct:   18 RYLFTVPSRASILLRVVIPENAGPFPEGRPAVNITLFPTTREGAGNSSSGPPEDTGGMPRGVGRISLNPKCQPTSNLAIASSNGGVYMDSSAGAVTESVEVEAGEYVAVVSSFRPQEADYEITIYT 143
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BLAST of mRNA_H-elongata_contig51386.12400.1 vs. uniprot
Match: A0A024TNA2_9STRA (Calpain catalytic domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TNA2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.260e-13
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 1 
Query:   10 VILGQWKEDDGSAAGCSNFGRYLDNPRYFATVTSSTRLLMRLAIPEEAGPFPSGRPAINVSLFSAGSTGRGREEATEWTPASTLAIASSSKGVYLDSSGGSVTDAVELAAGDYIAIVSTYSPQAADYVLTVYS 408
            V  G+W  + G+AAGCSN+G YLDNP++   V ++ +L  RL    + G   S    INVSL+   STG+  +      P  T A  +S+KG Y +S+ G  T A +   G Y+AI ST+ P   D+ L  YS
Sbjct:  871 VCSGKWNVEVGTAAGCSNYGHYLDNPQFLVHVMATCQLFFRL---RQRGAASS---TINVSLYPCTSTGQLHDP--HCNP--TTAFVTSAKGSYTNSACGVRTPAAQFPRGFYLAIPSTFDPHHGDFDLHGYS 993
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BLAST of mRNA_H-elongata_contig51386.12400.1 vs. uniprot
Match: W4G3V3_9STRA (Calpain catalytic domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G3V3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.210e-13
Identity = 47/133 (35.34%), Postives = 69/133 (51.88%), Query Frame = 1 
Query:   10 VILGQWKEDDGSAAGCSNFGRYLDNPRYFATVTSSTRLLMRLAIPEEAGPFPSGRPAINVSLFSAGSTGRGREEATEWTPASTLAIASSSKGVYLDSSGGSVTDAVELAAGDYIAIVSTYSPQAADYVLTVYS 408
            V  G+W  D G+AAGCSN+G+YL NP+Y   V    +L  RL  P    P      +INVS++    +G    +  + T   T A  +S+KG Y +S+ G  T    +  G Y+ I ST+ P+  D+ L  Y+
Sbjct:  883 VCTGKWNPDAGTAAGCSNYGQYLQNPQYLLHVPVKCQLFFRLRPPRSTLPSEC---SINVSVYECSPSG----QLPDATANPTTAFLTSAKGAYTNSTCGVRTPLAHVPPGYYLVIPSTFEPRRGDFDLHGYA 1008
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BLAST of mRNA_H-elongata_contig51386.12400.1 vs. uniprot
Match: G4ZGX2_PHYSP (Calpain catalytic domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZGX2_PHYSP)

HSP 1 Score: 69.7 bits (169), Expect = 3.330e-11
Identity = 51/143 (35.66%), Postives = 72/143 (50.35%), Query Frame = 1 
Query:   13 ILGQWKEDDGSAAGCSNFGRYLDNPRYFATVTSSTRLLMRLAI--------PEEAGPFPSG-RPAINVSLFSAGSTGRGREEATEWTPASTLAIASSSKGVYLDS--SGGSVTDAVELAAGDYIAIVSTYSPQAADYVLTVYS 408
            + G+W    GSAAGCSN+G Y+ NP+Y   VT    +L RL +        P EA     G  P+INVS+F++ S G   +      P    A A+S+ GVY+    SG   T +     G YI + ST+ PQ   Y + +Y+
Sbjct:  836 LRGKWDIQTGSAAGCSNYGCYIFNPKYLVHVTQECDILARLLVLQPEADASPGEATAKEGGVAPSINVSVFASTSEG---DLLLSTNPKQAFAGATSAHGVYVSGAPSGVLATASRRYPPGWYIVLPSTFEPQELHYEIRLYA 975
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51386.12400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LU44_ECTSI1.880e-4150.33Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A6H5KS09_9PHAE1.890e-2646.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024TNA2_9STRA1.260e-1339.10Calpain catalytic domain-containing protein n=3 Ta... [more]
W4G3V3_9STRA3.210e-1335.34Calpain catalytic domain-containing protein n=3 Ta... [more]
G4ZGX2_PHYSP3.330e-1135.66Calpain catalytic domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51386contigH-elongata_contig51386:2112..3169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.6
Seed ortholog evalue1.6e-35
Seed eggNOG ortholog2880.D8LU44
KEGG koko:K08582
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons3
Model size408
Cds size408
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51386.12400.1prot_H-elongata_contig51386.12400.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51386 2112..3169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930841.2016258-CDS-H-elongata_contig51386:2111..22001622930841.2016258-CDS-H-elongata_contig51386:2111..2200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51386 2112..2200 +
1691679593.1992614-CDS-H-elongata_contig51386:2111..22001691679593.1992614-CDS-H-elongata_contig51386:2111..2200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51386 2112..2200 +
1622930841.2217162-CDS-H-elongata_contig51386:2802..29521622930841.2217162-CDS-H-elongata_contig51386:2802..2952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51386 2803..2952 +
1691679593.2132647-CDS-H-elongata_contig51386:2802..29521691679593.2132647-CDS-H-elongata_contig51386:2802..2952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51386 2803..2952 +
1622930841.234084-CDS-H-elongata_contig51386:3000..31691622930841.234084-CDS-H-elongata_contig51386:3000..3169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51386 3001..3169 +
1691679593.2231448-CDS-H-elongata_contig51386:3000..31691691679593.2231448-CDS-H-elongata_contig51386:3000..3169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51386 3001..3169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51386.12400.1

>prot_H-elongata_contig51386.12400.1 ID=prot_H-elongata_contig51386.12400.1|Name=mRNA_H-elongata_contig51386.12400.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MVQVILGQWKEDDGSAAGCSNFGRYLDNPRYFATVTSSTRLLMRLAIPEE
AGPFPSGRPAINVSLFSAGSTGRGREEATEWTPASTLAIASSSKGVYLDS
SGGSVTDAVELAAGDYIAIVSTYSPQAADYVLTVYS
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mRNA from alignment at H-elongata_contig51386:2112..3169+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51386.12400.1 ID=mRNA_H-elongata_contig51386.12400.1|Name=mRNA_H-elongata_contig51386.12400.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1058bp|location=Sequence derived from alignment at H-elongata_contig51386:2112..3169+ (Himanthalia elongata Himel1 dioecious)
ATGGTGCAGGTGATCCTGGGTCAATGGAAAGAAGATGATGGGTCTGCGGC
AGGCTGCAGCAACTTTGGGAGATATCTCGATAATCCAAGGTGGGAGCAAA
TCGAATGTCTGCCATTGTATCTTGAAGCAGTTACTCTGTTCTCGAGACTC
TACAAAAGAAGCGCGCGGGTCTCGAAGGATGTTTTGAGCGTGTCGGATAC
CGTCAATCAACCTATCGAATCGATCAACGAAAGCGGGAAGTGGGAAGAAT
GGTATCAAACCAGTCGCTTCCGGGGAAAAATATGATCCATCCCCTCATGA
GATAGATTCATTGCAGGCTTCAAGGGGTCACAAACGTTTCAAGAAAAGAG
GGTGGATAACCCCATCGCCGAGAGGGGCTTCTGTAATCCCCCCCCCCCTC
CCGAACTCCGGGGCATATACATGCCACATCAGAATGCCTCCTTAATAAAA
ACTAGGCTGAAACGCCTCGTACAAGACGGCGTTGAGCAGGGAAAAGCCAT
GTTGCCCGGCCATCGAGGGTGGTGAAAAACCTTTTTGGAAAAGGGATTAT
TTGATGTTGTCCCCTCCCCCAAAACTTGGAGGCTGATTTGTCACCCCTAC
CCTCTCCCGTTGAGTATTTAATTATTCGACCTCCCCCTCAAATCCTACAA
GTGCAAGACCTGTTAAACCCTTCCCCCGGAACCTCGCCCAGGTACTTCGC
AACGGTCACGTCTAGCACTAGGCTGCTTATGCGACTCGCGATTCCGGAGG
AAGCGGGACCTTTTCCCTCTGGAAGGCCTGCCATCAACGTATCGCTATTT
TCGGCGGGTTCGACGGGGCGGGGGCGAGAAGAAGCGACGGAGTCCCCTAG
ACCCGACGTTCCGGGCGAGAAAGGAATCCTGAATCCGAGATGGACGCCGG
CCTCCACCCTAGCAATTGCTTCGTCGAGCAAAGGAGTGTACTTGGATTCC
AGCGGGGGTAGCGTAACCGACGCGGTGGAACTGGCGGCGGGGGATTACAT
TGCGATAGTGTCCACGTATTCGCCCCAGGCGGCCGACTACGTCCTGACGG
TGTATTCT
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Coding sequence (CDS) from alignment at H-elongata_contig51386:2112..3169+

>mRNA_H-elongata_contig51386.12400.1 ID=mRNA_H-elongata_contig51386.12400.1|Name=mRNA_H-elongata_contig51386.12400.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig51386:2112..3169+ (Himanthalia elongata Himel1 dioecious)
ATGGTGCAGGTGATCCTGGGTCAATGGAAAGAAGATGATGGGTCTGCGGC
AGGCTGCAGCAACTTTGGGAGATATCTCGATAATCCAAGATGGTGCAGGT
GATCCTGGGTCAATGGAAAGAAGATGATGGGTCTGCGGCAGGCTGCAGCA
ACTTTGGGAGATATCTCGATAATCCAAGGTACTTCGCAACGGTCACGTCT
AGCACTAGGCTGCTTATGCGACTCGCGATTCCGGAGGAAGCGGGACCTTT
TCCCTCTGGAAGGCCTGCCATCAACGTATCGCTATTTTCGGCGGGTTCGA
CGGGGCGGGGGCGAGAAGAAGCGACGGAGTACTTCGCAACGGTCACGTCT
AGCACTAGGCTGCTTATGCGACTCGCGATTCCGGAGGAAGCGGGACCTTT
TCCCTCTGGAAGGCCTGCCATCAACGTATCGCTATTTTCGGCGGGTTCGA
CGGGGCGGGGGCGAGAAGAAGCGACGGAATGGACGCCGGCCTCCACCCTA
GCAATTGCTTCGTCGAGCAAAGGAGTGTACTTGGATTCCAGCGGGGGTAG
CGTAACCGACGCGGTGGAACTGGCGGCGGGGGATTACATTGCGATAGTGT
CCACGTATTCGCCCCAGGCGGCCGACTACGTCCTGACGGTGTATTCTATG
GACGCCGGCCTCCACCCTAGCAATTGCTTCGTCGAGCAAAGGAGTGTACT
TGGATTCCAGCGGGGGTAGCGTAACCGACGCGGTGGAACTGGCGGCGGGG
GATTACATTGCGATAGTGTCCACGTATTCGCCCCAGGCGGCCGACTACGT
CCTGACGGTGTATTCT
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