mRNA_H-elongata_contig5132.12390.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5132.12390.1
Unique NamemRNA_H-elongata_contig5132.12390.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5132.12390.1 vs. uniprot
Match: A0A6H5L313_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L313_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 8.050e-67
Identity = 124/247 (50.20%), Postives = 170/247 (68.83%), Query Frame = 1 
Query:   10 IWRCNKCRSWFHASCGQMGLGDAITNDKARDEALCRACSRVTVGST-GKEPGSSVQKQLALIRSKREKMLTLLERELDNGWPEGVFDLTISTE----AGAIR----NARGP--DGNLAAESSGADARGLSAPPCAAEGCERRSRPDSRYCSDGCGVRNAQLLLSGALRHSLEERLGRERGRRLGELREMKARKQEVGTTMKKLYLPRPPVLRRQEAAKLHTIVEKRRRLWKRLLDIGAYWETVTGSR 717
            I RC+KC +W+H SCGQM  GD I++++AR+E LCRAC+R+T+G+  GK+P +++QKQL+L+R KR KML  LER+++ G P GVFDL ++      AG +     NA+GP   GN    + G D R  + PPCAA  C R SR DS++C D CGV +A+  L+ A+RH +EE  G +RGRRL E RE+K RKQ+VG  MKK+  PR P  + +    LH +V +R RLW+RL++IGAYWE V+GSR
Sbjct:  530 IVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCRACARITIGAPQGKDPTATLQKQLSLVREKRTKMLEFLERDVETGTPCGVFDLPLNIRDVNTAGGVELKDGNAKGPAAGGNSNGGNGGVDMRD-NRPPCAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALHGLVARRCRLWQRLIEIGAYWEKVSGSR 775
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BLAST of mRNA_H-elongata_contig5132.12390.1 vs. uniprot
Match: D8LQA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA3_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 4.750e-65
Identity = 121/247 (48.99%), Postives = 168/247 (68.02%), Query Frame = 1 
Query:   10 IWRCNKCRSWFHASCGQMGLGDAITNDKARDEALCRACSRVTVGST-GKEPGSSVQKQLALIRSKREKMLTLLERELDNGWPEGVFDLTIS----TEAGAIR----NARGPD--GNLAAESSGADARGLSAPPCAAEGCERRSRPDSRYCSDGCGVRNAQLLLSGALRHSLEERLGRERGRRLGELREMKARKQEVGTTMKKLYLPRPPVLRRQEAAKLHTIVEKRRRLWKRLLDIGAYWETVTGSR 717
            I RC+KC +W+H SCGQM  GD I++++AR+E LCR C+R+ +G+  GK+P +++QKQL+L+R KR KML  LE +++ G P GVFDL ++    + AG +     NA GPD  GN    + G D R  + PPCAA  C R SR DS++C D CGV +A+  L+ A+RH +EE  G +RGRRL E RE+K RKQ+VG  MKK+  PR P  + +    LH +V ++ RLW+RL++IGAYWE V+GSR
Sbjct:  553 IVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCRTCARIAIGAPQGKDPTATLQKQLSLVREKRTKMLEFLEEDVETGAPCGVFDLPLNIRDVSTAGGVGPKDGNANGPDAGGNSNGGNGGVDKRD-NRPPCAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALHALVVRKCRLWQRLIEIGAYWEKVSGSR 798
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5132.12390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L313_9PHAE8.050e-6750.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQA3_ECTSI4.750e-6548.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5132contigH-elongata_contig5132:7317..10885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-26_005550.1
Exons3
Model size809
Cds size807
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5132.12390.1prot_H-elongata_contig5132.12390.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5132 7317..10884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930840.0941253-CDS-H-elongata_contig5132:7316..75891622930840.0941253-CDS-H-elongata_contig5132:7316..7589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5132 7317..7589 +
1691679592.6775951-CDS-H-elongata_contig5132:7316..75891691679592.6775951-CDS-H-elongata_contig5132:7316..7589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5132 7317..7589 +
1622930840.1111534-CDS-H-elongata_contig5132:8643..89311622930840.1111534-CDS-H-elongata_contig5132:8643..8931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5132 8644..8931 +
1691679592.687219-CDS-H-elongata_contig5132:8643..89311691679592.687219-CDS-H-elongata_contig5132:8643..8931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5132 8644..8931 +
1622930840.12553-CDS-H-elongata_contig5132:10638..108841622930840.12553-CDS-H-elongata_contig5132:10638..10884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5132 10639..10884 +
1691679592.6983378-CDS-H-elongata_contig5132:10638..108841691679592.6983378-CDS-H-elongata_contig5132:10638..10884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5132 10639..10884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5132.12390.1

>prot_H-elongata_contig5132.12390.1 ID=prot_H-elongata_contig5132.12390.1|Name=mRNA_H-elongata_contig5132.12390.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=269bp
PEAIWRCNKCRSWFHASCGQMGLGDAITNDKARDEALCRACSRVTVGSTG
KEPGSSVQKQLALIRSKREKMLTLLERELDNGWPEGVFDLTISTEAGAIR
NARGPDGNLAAESSGADARGLSAPPCAAEGCERRSRPDSRYCSDGCGVRN
AQLLLSGALRHSLEERLGRERGRRLGELREMKARKQEVGTTMKKLYLPRP
PVLRRQEAAKLHTIVEKRRRLWKRLLDIGAYWETVTGSRSLSVGRAYWQQ
QQAAEARAAAVLQRTAGTG
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mRNA from alignment at H-elongata_contig5132:7317..10885+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5132.12390.1 ID=mRNA_H-elongata_contig5132.12390.1|Name=mRNA_H-elongata_contig5132.12390.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3569bp|location=Sequence derived from alignment at H-elongata_contig5132:7317..10885+ (Himanthalia elongata Himel1 dioecious)
CCAGAAGCAATATGGCGATGTAATAAGTGCAGATCGTGGTTCCACGCCTC
CTGTGGCCAAATGGGGCTCGGGGACGCCATCACCAACGACAAGGCTCGAG
ACGAAGCGCTCTGCCGCGCGTGTTCCCGCGTCACCGTGGGCTCCACCGGG
AAAGAACCCGGGTCGAGCGTTCAGAAGCAATTGGCGCTGATCCGCTCGAA
GCGGGAGAAGATGCTGACCTTGCTGGAGCGGGAGTTGGACAACGGTTGGC
CAGAAGGCGTTTTCGACCTGACCGTAAGTCCTTCGAGGGGAACGGGGTAT
CTATCGCTTCTGCCCACGCCGTCTAACTTGCCCACCTGCGCTTTTCCTTA
ACGATGCGTCTGATGGTCTGACCTCTGCCGATTTTGGAAGTCAGCTCTTA
CGTCACCCCCATTATATATTGTGCTCGGCGCCCTTAGCTTGCTCTTCTGG
CTAACGTAGCTGTAGAGTGTACATGTAGCAGTCTGCCTGCCGAAGAGCAA
GGCGAGAGAGGCCGCTCCAATGTCGAATGGGTGTCGGCGGGGTAAAGCAG
AGCCCCCCCCCCCTTCCCCTCGATAGTGTGTTGTGTGCTGTGGGCATTAA
TCCCCCCCCAACGGCTGGTGGCAGTTAATTCGTGCCGTTTGTGTCCTGTT
TGCCCAGAGACCTTGATCGACGAGTCTTGTCTCTCTCTCCCCATAGGGAT
GAAACGCATGACATGGACATGGAACATTCTAATAGTTAATGCCCACTGCA
CAATGGTTGACTGTTTGGAAAGCCCTAGAGCAACCAAAGACTAATGAGAG
TACGCCGGCAGGATTATTTAGCAGCAGATTGTAGCCTGGGTGTATCACGC
ATATACCATTGTATATGTTGTGTGCGTGTGACGCTTTATGCGTTCGAGCG
GAATTTTTGCGGTACTTATGAGTATATTATATATAGTATATTATAGTATA
TTATATTATTGTGTAGTATAGATTATATAGCATAACGCTAACATCCACTG
AATGGGCCACACTTGATTCCTCGTTATGTCCGCTTAACCTATGGCATGCT
TGGTTTGGCGTAACATAAACGCAAGGATGATGGCCAAAATATGGTATAAT
TCTTGTGAAACACAGTCTGACCGGCAAAGACCCGACATGCTGCGCTCCGT
CCCGGCATTATCGGGATGCGTGGTCTATGTCCGTTAGGATGCAACATGCG
CCTAGCGTAAGTACCCCACCCCCTCCATTTTGTTTGTAGTATTTTTATAC
CTTATACCTCGCGGTACCTTATCGTTCTCCCATCGTCACCAGTAAGCCAC
TTGTTCGTTATATCCGCCCCCTCGCAGATAAGTACGGAAGCAGGAGCGAT
AAGAAACGCCCGCGGCCCTGACGGGAACCTCGCCGCCGAGTCGAGCGGTG
CGGACGCCCGAGGGCTCTCCGCGCCCCCCTGCGCGGCGGAAGGATGCGAG
CGGAGATCTCGCCCGGACTCGCGGTATTGCTCTGATGGCTGCGGCGTTCG
GAACGCGCAGCTCTTGCTGTCCGGCGCCCTGCGGCACTCGCTCGAGGAGA
GGCTTGGCAGAGAGCGCGGGCGGCGTCTGGGGGAGCTGAGGGAGATGAAG
GCTCGGAAGCAAGAAGTGAGGAGAGAAATACAACTTGGCATTGTATGTGT
ATGCGTATGTGTGCGTGTTTTCCCCTAATGCGTGTGTTCCGTTACACCGC
AGATTTTCATGTGCAGAACCGCCGTGTTGGGGAAATCTAAAATGGCAACA
TCGCAAGCAAAAAATGGAAGGCTAGGCGAGAAAAAACTAGTAACGAAACG
AAAGGTGTAGCGGGCCAGTAATACGAGGGGTCGACGAGCCATATCGGGGG
AGCTAATGTAGAAGTACAGAGAGTATGGAAAATATTTGATATATCCAGAA
AAGGGACATTGTCAATGAAAAGGTCGGGGACATGAGCCGGTGCTTTGGTA
CCCTGAGGAAACGCGGGTCTAAAAATGTACGGAATGATCGACGAAGGAAT
ATGCTTCCATCAACACTTCCTTGACACAAAGTTGGAGGTCAAATTCAGGA
CTGGAGACAGCAACCTCTGAGAAGTAGATGGAGATTTGGGAAAGTTGATA
TATCAGGTAAGACGGGGACGAGTACAAATGTGGTTGCGGCTGGGATGAGC
TTGAAGAGTGCCAGAGGAGAGATGAGCATGTACGATTGAAGCAGCATGGT
ACACAGCCAGAAAAACGTCGGTTGCTGTACTGTATAGCAAGTAGGGACAC
GGTAGGATAGGAAAACATGCTTGCGCCACCTTTGGGAAAATAGAGAGGAA
CGATTGATTGGCCATCGACGATCAATGATTGTAGGCATATAATGATCTCC
CCGTCCTCTATCTCCCTACCGAGGACTAACGAAAACGATAACCATAACGA
TAATGGTAATCGTGGTCGAATGGTCTAACAGCTAAGGCATGGAAATCTTG
TGTACGCCGCCCCCCTTTTCCGGGTTGTCTTTTCTTGTTGCATGAAGCCG
TAAATACTGCTAGTTATATAGGACATGGGGAGTTAGTTCGTTATACAATG
TGTCCTGTGAGCTCAGAGACTTCGATCGAAGAGTCTTTTAGCTCGGTCTA
TCTCCTTAAAGGGCTGAAACGGATCACATCATGACATTCAATAGGTTGCC
TGCTGAACAACGATTGATTGTTTGGAAAGACATAGAGCAACCATTAACTT
GTGAGTAGACTCGGCCAAGAGTATTTCACGAGCAGGTCATAGTCTTTTGA
GTGAATCACGTAGTGTATCGCTAGATTTGTGGCCTGCGTGCGGTGCTTAT
GTATTCTCAAGGAGATTAAGCATACTTTGCGGTACTTAAAATATTATAGT
CACGCAGGGTATAGCATTTGGGTACCCTGTGTGTCCAGCATCCAAATAGG
CCATGGCATCTCCGACTTGACACAGCAAAGGTAGTAATGTCCACATTCGA
ACCTGGCGATGTATATGGTCCCCTGGACTGCAACTACCTCTCACGGTGCT
GAGAATTATATAGGATATAGTGTGGATGTTCGGAGGGTTGGAATGAGTTC
ATATAGTATGTTTTTTTAAAAGAAAAAATATATGGATGGTAACTAAAGGC
TGGTGTCATACTTGTGAACCGCAGCCTGGCCGGCGAAAACTCAGCATCAT
ATCACTCCATCCCTGCATTGTTATGGTTGGGATGTATGCGTGGTCTATGG
CCGTTAGGATCCGACACGCGTTTAAGACAAGTACACTCCCCTACCCTATT
CCCCTGGTGACGCGCGGTCCCACCGATCTATGCACCCCCTGGCGTTTTAT
TTTGCATTTGTTTGGTCTGCAGGTTGGAACTACGATGAAGAAGCTGTACC
TGCCTCGACCTCCCGTGCTCAGACGGCAAGAGGCAGCGAAGCTGCATACG
ATAGTGGAGAAAAGACGGCGTCTGTGGAAGCGACTCCTTGATATCGGTGC
ATACTGGGAAACAGTGACTGGGTCGAGGAGCCTCTCCGTAGGCCGGGCGT
ACTGGCAACAGCAGCAAGCCGCCGAAGCTCGGGCGGCGGCGGTTCTGCAA
CGAACCGCCGGTACCGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig5132:7317..10885+

>mRNA_H-elongata_contig5132.12390.1 ID=mRNA_H-elongata_contig5132.12390.1|Name=mRNA_H-elongata_contig5132.12390.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1614bp|location=Sequence derived from alignment at H-elongata_contig5132:7317..10885+ (Himanthalia elongata Himel1 dioecious)
CCAGAAGCAATATGGCGATGTAATAAGTGCAGATCGTGGTTCCACGCCTC
CTGTGGCCAAATGGGGCTCGGGGACGCCATCACCAACGACAAGGCTCGAG
ACGAAGCGCTCTGCCGCGCGTGTTCCCGCGTCACCGTGGGCTCCACCGGG
AAAGAACCCGGGTCGAGCGTTCAGAAGCAATTGGCGCTGATCCGCTCGAA
GCGGGAGAAGATGCTGACCTTGCTGGAGCGGGAGTTGGACAACGGTTGGC
CAGAAGGCGTTTTCGACCTGACCCCAGAAGCAATATGGCGATGTAATAAG
TGCAGATCGTGGTTCCACGCCTCCTGTGGCCAAATGGGGCTCGGGGACGC
CATCACCAACGACAAGGCTCGAGACGAAGCGCTCTGCCGCGCGTGTTCCC
GCGTCACCGTGGGCTCCACCGGGAAAGAACCCGGGTCGAGCGTTCAGAAG
CAATTGGCGCTGATCCGCTCGAAGCGGGAGAAGATGCTGACCTTGCTGGA
GCGGGAGTTGGACAACGGTTGGCCAGAAGGCGTTTTCGACCTGACCATAA
GTACGGAAGCAGGAGCGATAAGAAACGCCCGCGGCCCTGACGGGAACCTC
GCCGCCGAGTCGAGCGGTGCGGACGCCCGAGGGCTCTCCGCGCCCCCCTG
CGCGGCGGAAGGATGCGAGCGGAGATCTCGCCCGGACTCGCGGTATTGCT
CTGATGGCTGCGGCGTTCGGAACGCGCAGCTCTTGCTGTCCGGCGCCCTG
CGGCACTCGCTCGAGGAGAGGCTTGGCAGAGAGCGCGGGCGGCGTCTGGG
GGAGCTGAGGGAGATGAAGGCTCGGAAGCAAGAAATAAGTACGGAAGCAG
GAGCGATAAGAAACGCCCGCGGCCCTGACGGGAACCTCGCCGCCGAGTCG
AGCGGTGCGGACGCCCGAGGGCTCTCCGCGCCCCCCTGCGCGGCGGAAGG
ATGCGAGCGGAGATCTCGCCCGGACTCGCGGTATTGCTCTGATGGCTGCG
GCGTTCGGAACGCGCAGCTCTTGCTGTCCGGCGCCCTGCGGCACTCGCTC
GAGGAGAGGCTTGGCAGAGAGCGCGGGCGGCGTCTGGGGGAGCTGAGGGA
GATGAAGGCTCGGAAGCAAGAAGTTGGAACTACGATGAAGAAGCTGTACC
TGCCTCGACCTCCCGTGCTCAGACGGCAAGAGGCAGCGAAGCTGCATACG
ATAGTGGAGAAAAGACGGCGTCTGTGGAAGCGACTCCTTGATATCGGTGC
ATACTGGGAAACAGTGACTGGGTCGAGGAGCCTCTCCGTAGGCCGGGCGT
ACTGGCAACAGCAGCAAGCCGCCGAAGCTCGGGCGGCGGCGGTTCTGCAA
CGAACCGCCGGTACCGGGGTTGGAACTACGATGAAGAAGCTGTACCTGCC
TCGACCTCCCGTGCTCAGACGGCAAGAGGCAGCGAAGCTGCATACGATAG
TGGAGAAAAGACGGCGTCTGTGGAAGCGACTCCTTGATATCGGTGCATAC
TGGGAAACAGTGACTGGGTCGAGGAGCCTCTCCGTAGGCCGGGCGTACTG
GCAACAGCAGCAAGCCGCCGAAGCTCGGGCGGCGGCGGTTCTGCAACGAA
CCGCCGGTACCGGG
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