mRNA_H-elongata_contig51008.12361.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51008.12361.1
Unique NamemRNA_H-elongata_contig51008.12361.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig51008.12361.1 vs. uniprot
Match: D8LGS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS6_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 4.690e-48
Identity = 103/194 (53.09%), Postives = 126/194 (64.95%), Query Frame = 2 
Query:   11 MVGSTEIAAPAALAAFFILASYLNLNDPDWIVFSTAYALGAVICGWTVLQGL----LGGRGEAESDALSQRRRRYVAMTYAAACLGFAAKIVLLTPKEDPSPNSAGLVNVVLALLSNEIFREAGGVLIMAFAMAQCASIGRL--PSGSSKPTMGGKSV-HVASVVVAAAAILLGVLLPGYLERTGIAVPEHCGG 571
            M GS ++ AP AL AFF+LASYLNLNDPDWI++STAYALGAV+CGW+ LQ       G RG A+ DA     RR  AM Y AACLG A     L P+ +P     G   +VL  LS+E+ REAGG  I+A AMA CA + R    + +  P+  G++V  V SV VA A ++LGV LPGYL+R GIAVP HCGG
Sbjct:    1 MAGS-DVVAPIALGAFFLLASYLNLNDPDWILWSTAYALGAVVCGWSALQAAGAVGRGARGTAKDDA--SYSRRMTAMAYGAACLGLAGHSAFLAPRGEPL--ETGNDGIVLTFLSSEVAREAGGAFILAQAMAMCAFVWRPRDATATGAPSTSGRAVIGVVSVAVALAGVVLGVYLPGYLQRAGIAVPAHCGG 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51008.12361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGS6_ECTSI4.690e-4853.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51008contigH-elongata_contig51008:1216..3867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionTMEM220 protein
Ec32 orthologEc-07_005180.1
Exons3
Model size1970
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51008.12361.1prot_H-elongata_contig51008.12361.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51008 1223..2368 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930836.4142292-UTR-H-elongata_contig51008:1215..12221622930836.4142292-UTR-H-elongata_contig51008:1215..1222Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51008 1216..1222 +
1691679591.2785048-UTR-H-elongata_contig51008:1215..12221691679591.2785048-UTR-H-elongata_contig51008:1215..1222Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51008 1216..1222 +
1622930836.4828768-UTR-H-elongata_contig51008:2368..25721622930836.4828768-UTR-H-elongata_contig51008:2368..2572Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51008 2369..2572 +
1691679591.309083-UTR-H-elongata_contig51008:2368..25721691679591.309083-UTR-H-elongata_contig51008:2368..2572Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51008 2369..2572 +
1622930836.4997368-UTR-H-elongata_contig51008:2684..38671622930836.4997368-UTR-H-elongata_contig51008:2684..3867Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51008 2685..3867 +
1691679591.3185189-UTR-H-elongata_contig51008:2684..38671691679591.3185189-UTR-H-elongata_contig51008:2684..3867Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51008 2685..3867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930836.4333498-CDS-H-elongata_contig51008:1222..14341622930836.4333498-CDS-H-elongata_contig51008:1222..1434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51008 1223..1434 +
1691679591.289873-CDS-H-elongata_contig51008:1222..14341691679591.289873-CDS-H-elongata_contig51008:1222..1434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51008 1223..1434 +
1622930836.4611728-CDS-H-elongata_contig51008:2004..23681622930836.4611728-CDS-H-elongata_contig51008:2004..2368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51008 2005..2368 +
1691679591.2999353-CDS-H-elongata_contig51008:2004..23681691679591.2999353-CDS-H-elongata_contig51008:2004..2368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51008 2005..2368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51008.12361.1

>prot_H-elongata_contig51008.12361.1 ID=prot_H-elongata_contig51008.12361.1|Name=mRNA_H-elongata_contig51008.12361.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp
MMVGSTEIAAPAALAAFFILASYLNLNDPDWIVFSTAYALGAVICGWTVL
QGLLGGRGEAESDALSQRRRRYVAMTYAAACLGFAAKIVLLTPKEDPSPN
SAGLVNVVLALLSNEIFREAGGVLIMAFAMAQCASIGRLPSGSSKPTMGG
KSVHVASVVVAAAAILLGVLLPGYLERTGIAVPEHCGGGGE*
back to top

mRNA from alignment at H-elongata_contig51008:1216..3867+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51008.12361.1 ID=mRNA_H-elongata_contig51008.12361.1|Name=mRNA_H-elongata_contig51008.12361.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2652bp|location=Sequence derived from alignment at H-elongata_contig51008:1216..3867+ (Himanthalia elongata Himel1 dioecious)
AGGAGTGATGATGGTGGGATCCACGGAAATCGCGGCGCCAGCGGCACTCG
CCGCCTTCTTCATCTTGGCATCTTACCTCAACCTGAACGACCCTGACTGG
ATAGTTTTCTCTACCGCCTACGCGCTTGGAGCGGTCATCTGCGGCTGGAC
TGTCTTGCAGGGGCTGTTAGGGGGTAGGGGTGAGGCGGAGAGCGATGCTT
TGTCACAGAGGCGTCGGAGGTGAGATGACTCTTTGGGAACCGGACCCCAC
TAACCAGCCGACCGACCTCCCGTGTTTTGGGGCCACACCCTGTAGTCGAA
ATATTGCGAAGAACGCGTTGACCACCCATTTTATTCTATTTTTAGAGATG
AATTCCGCGATTTGAGAATGATGCTCGTATTCCTGCTGCTTGGTTTAAAA
TGCATTGTATAGTCGTTGGATGGCGTTTGGTTTGGCATCGGGGTCGTCTC
CTCTTAGCCCGAAGGGTCAAAATCCCGTAACGCGCGCGTTGTTCCTCGGC
TGAGGGAAACGATGGTCGTCCGACAACTCTCTGAACCGATCTAATCTTAT
CTGGCTTGCAAAGCACGGCATAGGTGGTGTCCTTTACGCCTCGAGGTGGT
TGATGCGGCGCAGGTGGTGTCGTGGTGGAGACCCGGACTCCACGCTCGCA
ATCCGACGTCGAACGGGCTCGCTCTAGAATAACGATTGCCAAAATAAGGT
TTGAGCCGAGTCACGCTCGCAATCATGCGAAAAAACACCGCACCGACGCC
GCGTGACACGTGTCGTTTGGTTTTGCGTGCTGATCGCAGATACGTGGCCA
TGACGTATGCCGCCGCTTGCCTTGGATTTGCGGCAAAAATCGTCCTCTTG
ACCCCGAAGGAGGACCCCTCCCCCAACAGCGCAGGCCTTGTCAATGTGGT
CTTGGCCTTGCTCAGTAACGAAATTTTTCGCGAAGCGGGAGGGGTTCTCA
TTATGGCATTCGCAATGGCTCAATGCGCCTCCATCGGCAGACTGCCGAGC
GGATCCTCCAAGCCCACGATGGGTGGGAAGTCAGTGCATGTTGCGAGCGT
GGTGGTCGCCGCCGCGGCGATCTTGCTGGGAGTGTTGCTCCCGGGATACC
TAGAGCGCACGGGCATCGCGGTGCCCGAGCACTGCGGTGGCGGTGGAGAA
TGAACGCAATATAGAGTATCGAGTATCGCGTCGAGGAGGGCGTAAAGTCT
CGGTCGGGTACCTGGGTCTGCTTTTGGCTTTGTTTTCGCCCTTGGCTGGC
GCTTTGATATCGTTTTTTCTCAGATCGTTCTGTATAAATTAGTAGTTTCC
AGGTGAAATGTTGGGCGGTCGGGAGGGGCAATTTGGACTACCGAACAATC
TCCCCCCCCCCCCCCCCCCCCCCCCCCCGTATTTGGGTGCGCGCGCGCGG
CCCCATCTAAATGGTGTTGGGGNNNNNNNNNNGGGGGGGGAACGGGGGCC
CCCCGACAGCCTGCCCCCTCCCCCCCCCCCCCCGATTCGTATATTTGAGC
TAGCGAGCGTTGTCATATCCAGATGTTTTGGGTACACTGTTGGTTCTGTT
CCTCAAAATAGTAAACTTGGTTAGTCGTCTATTCCGTATGTCCTTTTATA
TTGTGCACCTCGTCACACCCTCCCCCCGTCCCCGTCCGCGTCACGCCTCA
TGTGAACATACCTTCCTCACCAATATGTGTAGTGTGTTTTATGCCTTTAG
TGTGTCGCGTATAGGAGTGTGTGTGTATGCATGTTGTAAGTCACGAGGCC
AATCAATTGTATAGAATGATTCTACGCTACAGCTTTGTCTTGTAGATATT
GTAGATCCGTGCACTCAACTCTATTCTAGTGTAAAAACGCAGCCCTTCAT
ACTCCCATGGTGTCAGTTCCTTTCATCGGCAGTCCAGTATATGGTATAGT
CTACTGAGACGCTACCGTCCGGGCGGAGATTGCACTTCTGCTGAAGAATA
AAGTTGTACCCTAGCACATTTGTTAAAAGAGGAACATTTCGTAGAGCAGT
CCCTCCCTTCCCTCACCCAACCCTCTTTCCCCGATTTTTCCGCGCGAGCT
AATTTCATGCTGTAGGGATTGGAGTGTTGAGGGCGAAAGGTCCCAGAAAA
TGGTTTCCTGAGACTGCCATACGCTCGCCGAAGTAGAACACAATCGAAGT
TGAGTTGATTTGATATTTCTGGACAGAAATCACCGATTTCCGACTGATTC
CTGACAAAGCTGGACCTAGGAAAATCTGATCGCCATATTGTTCAGGTAAA
AAATCAGCGATTTTTGACCACGAAAAATGAAAAATCCAACAAGCAGATGT
TCGGAAAAAATGAGTGATCCCCTCCCCTCCTCCTCGTGATCGGATTTAAT
TTAGTATATTTAACCTGGGCAGGCTTTCACGCACGTCTTCAATCGAACCG
CTGCTGGGCAGGCAGCAGTTCTCTATGACATAGGACCCCGGCCTGCACAG
GCACCGCAGCCGACAACGCTCCAGGCACAGTACCCATCAAGCAAGCGTCC
CACGTTTTCGTGTTAAAGCTTCCTTGAAATCGTCTTGGCGTTGCCTTCTC
TCTGTTGACGAGTCGTGTGGTTAAATCGAAGTTATCATTTTCCTTTATTT
CTGTGTGTGTGCCGTCATCTCCAAGTTATCCTGTGTGACGTCATACTTGT
GG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig51008:1216..3867+

>mRNA_H-elongata_contig51008.12361.1 ID=mRNA_H-elongata_contig51008.12361.1|Name=mRNA_H-elongata_contig51008.12361.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig51008:1216..3867+ (Himanthalia elongata Himel1 dioecious)
ATGATGGTGGGATCCACGGAAATCGCGGCGCCAGCGGCACTCGCCGCCTT
CTTCATCTTGGCATCTTACCTCAACCTGAACGACCCTGACTGGATAGTTT
TCTCTACCGCCTACGCGCTTGGAGCGGTCATCTGCGGCTGGACTGTCTTG
CAGGGGCTGTTAGGGGGTAGGGGTGAGGCGGAGAGCGATGCTTTGTCACA
GAGGCGTCGGAGATGATGGTGGGATCCACGGAAATCGCGGCGCCAGCGGC
ACTCGCCGCCTTCTTCATCTTGGCATCTTACCTCAACCTGAACGACCCTG
ACTGGATAGTTTTCTCTACCGCCTACGCGCTTGGAGCGGTCATCTGCGGC
TGGACTGTCTTGCAGGGGCTGTTAGGGGGTAGGGGTGAGGCGGAGAGCGA
TGCTTTGTCACAGAGGCGTCGGAGATACGTGGCCATGACGTATGCCGCCG
CTTGCCTTGGATTTGCGGCAAAAATCGTCCTCTTGACCCCGAAGGAGGAC
CCCTCCCCCAACAGCGCAGGCCTTGTCAATGTGGTCTTGGCCTTGCTCAG
TAACGAAATTTTTCGCGAAGCGGGAGGGGTTCTCATTATGGCATTCGCAA
TGGCTCAATGCGCCTCCATCGGCAGACTGCCGAGCGGATCCTCCAAGCCC
ACGATGGGTGGGAAGTCAGTGCATGTTGCGAGCGTGGTGGTCGCCGCCGC
GGCGATCTTGCTGGGAGTGTTGCTCCCGGGATACCTAGAGCGCACGGGCA
TCGCGGTGCCCGAGCACTGCGGTGGCGGTGGAGAATGAATACGTGGCCAT
GACGTATGCCGCCGCTTGCCTTGGATTTGCGGCAAAAATCGTCCTCTTGA
CCCCGAAGGAGGACCCCTCCCCCAACAGCGCAGGCCTTGTCAATGTGGTC
TTGGCCTTGCTCAGTAACGAAATTTTTCGCGAAGCGGGAGGGGTTCTCAT
TATGGCATTCGCAATGGCTCAATGCGCCTCCATCGGCAGACTGCCGAGCG
GATCCTCCAAGCCCACGATGGGTGGGAAGTCAGTGCATGTTGCGAGCGTG
GTGGTCGCCGCCGCGGCGATCTTGCTGGGAGTGTTGCTCCCGGGATACCT
AGAGCGCACGGGCATCGCGGTGCCCGAGCACTGCGGTGGCGGTGGAGAAT
GA
back to top