prot_H-elongata_contig51008.12361.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig51008.12361.1
Unique Nameprot_H-elongata_contig51008.12361.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length192
Homology
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BLAST of mRNA_H-elongata_contig51008.12361.1 vs. uniprot
Match: D8LGS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS6_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 2.910e-53
Identity = 103/194 (53.09%), Postives = 126/194 (64.95%), Query Frame = 0 
Query:    2 MVGSTEIAAPAALAAFFILASYLNLNDPDWIVFSTAYALGAVICGWTVLQGL----LGGRGEAESDALSQRRRRYVAMTYAAACLGFAAKIVLLTPKEDPSPNSAGLVNVVLALLSNEIFREAGGVLIMAFAMAQCASIGRL--PSGSSKPTMGGKSV-HVASVVVAAAAILLGVLLPGYLERTGIAVPEHCGG 188
            M GS ++ AP AL AFF+LASYLNLNDPDWI++STAYALGAV+CGW+ LQ       G RG A+ DA     RR  AM Y AACLG A     L P+ +P     G   +VL  LS+E+ REAGG  I+A AMA CA + R    + +  P+  G++V  V SV VA A ++LGV LPGYL+R GIAVP HCGG
Sbjct:    1 MAGS-DVVAPIALGAFFLLASYLNLNDPDWILWSTAYALGAVVCGWSALQAAGAVGRGARGTAKDDA--SYSRRMTAMAYGAACLGLAGHSAFLAPRGEPL--ETGNDGIVLTFLSSEVAREAGGAFILAQAMAMCAFVWRPRDATATGAPSTSGRAVIGVVSVAVALAGVVLGVYLPGYLQRAGIAVPAHCGG 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51008.12361.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGS6_ECTSI2.910e-5353.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029377TMEM220 proteinPFAMPF15071TMEM220coord: 17..134
e-value: 2.7E-15
score: 57.0
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..30
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 176..191
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 142..152
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 153..175
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..50
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 91..119
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 71..90
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 120..141
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..70
NoneNo IPR availableTMHMMTMhelixcoord: 7..26
NoneNo IPR availableTMHMMTMhelixcoord: 153..175
NoneNo IPR availableTMHMMTMhelixcoord: 73..92
NoneNo IPR availableTMHMMTMhelixcoord: 31..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51008contigH-elongata_contig51008:1223..2368 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51008.12361.1mRNA_H-elongata_contig51008.12361.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig51008 1216..3867 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig51008.12361.1 ID=prot_H-elongata_contig51008.12361.1|Name=mRNA_H-elongata_contig51008.12361.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp
MMVGSTEIAAPAALAAFFILASYLNLNDPDWIVFSTAYALGAVICGWTVL
QGLLGGRGEAESDALSQRRRRYVAMTYAAACLGFAAKIVLLTPKEDPSPN
SAGLVNVVLALLSNEIFREAGGVLIMAFAMAQCASIGRLPSGSSKPTMGG
KSVHVASVVVAAAAILLGVLLPGYLERTGIAVPEHCGGGGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029377TMEM220