mRNA_H-elongata_contig50876.12349.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50876.12349.1 vs. uniprot
Match: A0A6H5JC42_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JC42_9PHAE) HSP 1 Score: 236 bits (602), Expect = 9.310e-77 Identity = 112/138 (81.16%), Postives = 120/138 (86.96%), Query Frame = 1
Query: 1 IGGSSARRRRQTISRAALEARLQLTHPSIELGRLRLLLVDRDFTGEDYQALLDLDENNQVPSTAGASEGEIRRNPSFLLKEAPLDSMGKPKNCTICLYPFKPSARVRIIPCLHQFHTECIDPWLKMNAICPICKFPAV 414
I +ARRRRQ I R ALEARLQL HP IELGRLRLLLVDRDFTGEDYQALLDLDENN VPST GASEGEI+RNPSF++ E DS+ KPKNC+ICLYPFKP RVRIIPCLHQFHTECIDPWL+ NAICP+CKFPAV
Sbjct: 97 IRSDTARRRRQRIPRGALEARLQLHHPGIELGRLRLLLVDRDFTGEDYQALLDLDENNDVPSTVGASEGEIKRNPSFVIPEPAADSVVKPKNCSICLYPFKPRERVRIIPCLHQFHTECIDPWLRQNAICPVCKFPAV 234
BLAST of mRNA_H-elongata_contig50876.12349.1 vs. uniprot
Match: A0A836CGW1_9STRA (Ubiquitin-protein ligase/ zinc ion binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGW1_9STRA) HSP 1 Score: 149 bits (377), Expect = 1.490e-42 Identity = 72/139 (51.80%), Postives = 98/139 (70.50%), Query Frame = 1
Query: 1 IGGSSARRRRQTISRAALEARLQLTHPSIELG-RLRLLLVDRDFTGEDYQALLDLDENNQVPSTAGASEGEIRRNPSFLLKEAPLDSMGKPKNCTICLYPFKPSARVRIIPCLHQFHTECIDPWLKMNAICPICKFPAV 414
+ G+ AR + ++R E+R+ HP + G RL LLL+DRDF G+DYQ LL+LD +N P+ GA+E EIRRNP F ++E+ D+ ++C+ICL+ F VRI+PCLHQ+H+ECID WL+MNA CPICKFPAV
Sbjct: 108 VAGAGARV--EMVTRTQWESRMLARHPQLANGGRLALLLMDRDFDGDDYQMLLELDADNVAPAAVGATEAEIRRNPCFTVQES--DAKQLARSCSICLHTFCAGEEVRIVPCLHQYHSECIDEWLRMNATCPICKFPAV 242
BLAST of mRNA_H-elongata_contig50876.12349.1 vs. uniprot
Match: A0A485LC69_9STRA (Aste57867_17819 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LC69_9STRA) HSP 1 Score: 106 bits (264), Expect = 6.270e-26 Identity = 60/129 (46.51%), Postives = 76/129 (58.91%), Query Frame = 1
Query: 70 LTHPSIELGRLRLLL---------VDRDFTGEDYQALLDLDENNQVPSTAGASEGEIRRNPSFLLKEAPLDSMGK---PKN--CTICLYPFKPSARVRIIPCLHQFHTECIDPWLKMNAICPICKFPAV 414
L HPS R RLLL DRDF DY+ LL LDENN V + GA++ EI R P + E+ L S K P++ C+ICL ++ R++PC H+FH +CIDPWLK A CPICKFPA+
Sbjct: 83 LLHPSTAGERQRLLLSPTEINLLLTDRDFDSNDYEQLLMLDENN-VKKSHGATDVEIDRLPVVTVSESMLQSTNKGGVPEDLKCSICLEDLVVGSQARMVPCFHRFHPQCIDPWLKDKAECPICKFPAI 210
BLAST of mRNA_H-elongata_contig50876.12349.1 vs. uniprot
Match: A0A5D6XR94_9STRA (RING-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR94_9STRA) HSP 1 Score: 104 bits (259), Expect = 2.100e-25 Identity = 55/138 (39.86%), Postives = 77/138 (55.80%), Query Frame = 1
Query: 1 IGGSSARRRRQTISRAALEARLQLTHPSIELGRLRLLLVDRDFTGEDYQALLDLDENNQVPSTAGASEGEIRRNPSFLLKEAPLDSMGKPKNCTICLYPFKPSARVRIIPCLHQFHTECIDPWLKMNAICPICKFPAV 414
+ G ARR ++ ++AA+ + + ++ LRLL RDF DY+ LL LD S GA++ EI+R P E L + + C+ICL P A VR++ C H FH +CIDPWLK A CP+CKFPA+
Sbjct: 55 VQGKRARRGQRVQAQAAVVRISRAIYSQLDTDTLRLLASARDFDERDYERLLQLDSVRD--SDGGATDAEIQRFPLVAFTEQMLQASNR-AGCSICLSPIAVDASVRLLQCFHHFHPDCIDPWLKSKAECPMCKFPAI 189
BLAST of mRNA_H-elongata_contig50876.12349.1 vs. uniprot
Match: A0A3R7KYN5_9STRA (RING-type domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KYN5_9STRA) HSP 1 Score: 104 bits (259), Expect = 2.210e-25 Identity = 52/132 (39.39%), Postives = 83/132 (62.88%), Query Frame = 1
Query: 19 RRRRQTISRAALEARLQLTHPSIELGRLRLLLVDRDFTGEDYQALLDLDENNQVPSTAGASEGEIRRNPSFLLKEAPLDSMGKPKNCTICLYPFKPSARVRIIPCLHQFHTECIDPWLKMNAICPICKFPAV 414
RRRRQ +R + + + ++ L++LL +RDF DY+ L+ L+ N+ S GA+ +IR+ P + E+ L++ + +C +CL F+ ARVR++PC H+FH +CIDPWL+ A CP+CKFPA+
Sbjct: 62 RRRRQMTARGGVMQMSRAVYEQLDGEILQMLLSNRDFDSNDYERLMRLEALNER-SHDGATVQQIRQLPVISVTESMLEA-SENASCAVCLNAFQVDARVRMMPCFHRFHPDCIDPWLQEKASCPVCKFPAI 191
BLAST of mRNA_H-elongata_contig50876.12349.1 vs. uniprot
Match: L1IY96_GUITC (RING-type domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IY96_GUITC) HSP 1 Score: 100 bits (249), Expect = 1.220e-24 Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 82 SIELGRLRLLLVDRDFTGEDYQALLDLDENNQVPSTAGASEGEIRRNPSFLLKEAPLDSMGKPKNCTICLYPFKPSARVRIIPCLHQFHTECIDPWLKMNAICPICK 402
+I LRL L++RDFT DY+ALL LDE + GA++ I R P + + E K CT+CL P S + RI+PCLHQFH +CID WL+ N+ CP+CK
Sbjct: 21 NISQDHLRLSLINRDFTSNDYEALLSLDE--AAGRSRGANQDRIDRLPCYTVAEG-----SKAPPCTVCLDPLNVSDQARILPCLHQFHKDCIDRWLRDNSTCPVCK 120
BLAST of mRNA_H-elongata_contig50876.12349.1 vs. uniprot
Match: W7T4H0_9STRA (Zinc finger, RING-type n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4H0_9STRA) HSP 1 Score: 102 bits (253), Expect = 2.230e-24 Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 1
Query: 49 ALEARLQLTHPSIELGRLRLLLVDRDFTGEDYQALLDLDENNQ-VPSTAGASEGEIRRNPSFLLKEAPLDSMGKPKNCTICLYPFKPSARVRIIPCLHQFH-TECIDPWLKMNAICPICKF 405
A+E + L+ + RL+L+L+DRDF+ EDY+ L LDE+ Q GA++ E+ R P++++ D+ K C ICL F VRI+PCLHQFH +EC DPWL+ CP+CKF
Sbjct: 85 AVEEGIALSRRGTDSSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIV-----DTETKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKF 200
BLAST of mRNA_H-elongata_contig50876.12349.1 vs. uniprot
Match: A0A3F2RQ68_9STRA (RING-type domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQ68_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.390e-23 Identity = 46/105 (43.81%), Postives = 70/105 (66.67%), Query Frame = 1
Query: 100 LRLLLVDRDFTGEDYQALLDLDENNQVPSTAGASEGEIRRNPSFLLKEAPLDSMGKPKNCTICLYPFKPSARVRIIPCLHQFHTECIDPWLKMNAICPICKFPAV 414
L++LL +RDF DY+ L+ L+ N+ S GA+ +IR+ P + E+ L++ + +C +CL F+ ARVR++PC H FH +CIDPWL+ A CP+CKFPA+
Sbjct: 23 LQMLLSNRDFDSNDYERLMRLEALNER-SHDGATVQQIRQLPVISVTESMLEA-SENASCAVCLNAFQVDARVRMMPCFHHFHPDCIDPWLQEKASCPVCKFPAI 125
BLAST of mRNA_H-elongata_contig50876.12349.1 vs. uniprot
Match: H3GXJ4_PHYRM (RING-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXJ4_PHYRM) HSP 1 Score: 95.9 bits (237), Expect = 4.050e-22 Identity = 45/105 (42.86%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 100 LRLLLVDRDFTGEDYQALLDLDENNQVPSTAGASEGEIRRNPSFLLKEAPLDSMGKPKNCTICLYPFKPSARVRIIPCLHQFHTECIDPWLKMNAICPICKFPAV 414
L+LL+ +RDF DY+ L+ L+ N+ GAS +I++ P + E+ L + + +C +CL F+ RVR++PC H+FH ECIDPWL+ A CP+CKFPA+
Sbjct: 86 LQLLMSNRDFDSNDYERLMRLEALNER-KREGASPHQIQQLPIVTVTESMLQA-SENASCAVCLSTFQLDGRVRMMPCFHRFHQECIDPWLQEKASCPVCKFPAI 188
BLAST of mRNA_H-elongata_contig50876.12349.1 vs. uniprot
Match: A0A7S2EWT1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EWT1_TRICV) HSP 1 Score: 96.3 bits (238), Expect = 5.340e-22 Identity = 58/153 (37.91%), Postives = 77/153 (50.33%), Query Frame = 1
Query: 22 RRRQTISRAALEARLQLTHPSIELGRLRLLLVDRDFTGEDYQALLDLDENN-----QVPSTAGASEGEIRRNPSFLLKEAPLD-------SMGK----------PKNCTICLYPFKPSARVRIIPCLHQFHTECIDPWLKMNAICPICKFPAV 414
RRR+ I R R I L L+L RDFTG+DY+ LL ++ + +T GA+E EI R P ++ A D S G+ P++C ICL ++ S VR +PCLH FH CIDPWL+ A CP+CK AV
Sbjct: 63 RRREAILRRVNARRTANGEQPISAESLGLVLSGRDFTGDDYERLLRFNDESGPALESAAATVGATEAEITRCPRRIISSAGDDLISGRTRSAGEAAAASGGTRGPRSCPICLEQYQISEEVRTLPCLHTFHCNCIDPWLRQKAECPVCKQSAV 215 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50876.12349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50876.12349.1 >prot_H-elongata_contig50876.12349.1 ID=prot_H-elongata_contig50876.12349.1|Name=mRNA_H-elongata_contig50876.12349.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp IGGSSARRRRQTISRAALEARLQLTHPSIELGRLRLLLVDRDFTGEDYQAback to top mRNA from alignment at H-elongata_contig50876:99..1881- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50876.12349.1 ID=mRNA_H-elongata_contig50876.12349.1|Name=mRNA_H-elongata_contig50876.12349.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1783bp|location=Sequence derived from alignment at H-elongata_contig50876:99..1881- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50876:99..1881- >mRNA_H-elongata_contig50876.12349.1 ID=mRNA_H-elongata_contig50876.12349.1|Name=mRNA_H-elongata_contig50876.12349.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig50876:99..1881- (Himanthalia elongata Himel1 dioecious)back to top |