mRNA_H-elongata_contig50822.12337.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: D8LG49_ECTSI (Succinate dehydrogenase assembly factor 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG49_ECTSI) HSP 1 Score: 133 bits (335), Expect = 4.570e-38 Identity = 67/94 (71.28%), Postives = 81/94 (86.17%), Query Frame = 1
Query: 88 VLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQLRDQSGGVGRSMSDEEAANLNDEQREQLFRLKQQTSAS 369
V RLYKDIL QHR++LP ++RELGDRYVRSEFKAHK ATG+QV QFMH W+SYL+QLR+Q G VGRS+S + ++LNDEQR+QL RLKQQ S+S
Sbjct: 11 VKRLYKDILRQHRFALPPKHRELGDRYVRSEFKAHKEATGDQVAQFMHAWRSYLEQLRNQGGQVGRSLSAADVSHLNDEQRKQLVRLKQQASSS 104
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: L1JE82_GUITC (Succinate dehydrogenase assembly factor 3 n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JE82_GUITC) HSP 1 Score: 77.8 bits (190), Expect = 3.520e-16 Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 1
Query: 79 RLAVLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQLRDQ--SGGVGRSMSDEEAANLNDEQREQLFRLKQQ 357
R A++ LY+ IL H+ LP +ELGD YVRSEFK HK A +V F W+ YL + Q SG GR++ +EEAA+LN EQ+E L RL+++
Sbjct: 7 RTAMISLYRKILRLHKRVLPNEMKELGDSYVRSEFKQHKKAKVGEVKVFARQWKEYLYTIEAQAASGTFGRNLREEEAAHLNQEQKENLKRLEEE 101
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: A0A7S0W326_9CRYP (Succinate dehydrogenase assembly factor 3 n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W326_9CRYP) HSP 1 Score: 77.0 bits (188), Expect = 1.430e-15 Identity = 48/120 (40.00%), Postives = 69/120 (57.50%), Query Frame = 1
Query: 7 LAFRVLRPRTLSLGKLEDMNSNNGRLAVLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQL--RDQSGGVGRSMSDEEAANLNDEQREQLFRLKQQT 360
L R R LG M S + ++L LY+ +L H+ LPQ +ELGD+Y RSEFKAHK A QV QF+ W+ Y+ L + Q G GR + + ++DEQREQL +L++++
Sbjct: 10 LLLRASRGEGGELGSC-GMASAFSKTSMLNLYRSVLRIHKRVLPQEMKELGDKYARSEFKAHKTAKIGQVKQFVQQWKEYVYTLDIQAQKGAFGRDLDSSKMDKMSDEQREQLKQLEEES 128
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: A0A7S2G7W5_9STRA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7W5_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 6.530e-13 Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 1
Query: 88 VLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQLR--DQSGGVGRSMSDEEAANLNDEQREQLFRLKQQT 360
L LY+ IL HR +LP RELGD+YVRSEF+ H+ A+ E ++ F W+ YL+ L+ D G GR + +E +A + DEQ++ L +L ++T
Sbjct: 4 ALSLYRSILRGHR-TLPAEMRELGDKYVRSEFRQHQAASPEFLETFFSEWEGYLETLQTSDSKTGFGRPLGEEISA-MTDEQKQMLLKLAEET 94
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: A0A7S4MXT2_9EUKA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MXT2_9EUKA) HSP 1 Score: 69.3 bits (168), Expect = 6.870e-13 Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 85 AVLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQL-RDQSGGVGRSMSDEEAANLNDEQREQLFRL 348
+ ++LY+ +L HR LP +RELGD YV++EF+ H+ A + QF W+ YL Q+ R VGR MS EE L+DEQ+ QL ++
Sbjct: 13 SFVKLYRAVLRAHRTHLPAAHRELGDTYVKAEFRLHQDAKPAFLQQFERQWRDYLKQITRPNEEHVGRGMSAEEVEALSDEQKVQLLKI 101
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: A0A8J2LFQ2_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2LFQ2_9HEXA) HSP 1 Score: 65.9 bits (159), Expect = 1.960e-11 Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query: 79 RLAVLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQLRDQSG--------GVGRSMSDEEAANLNDEQREQLFRLKQ 354
R VL+LYK IL HR +LP +ELG++YVR EF+ HKG E V FM W Y L +Q G +GRS+ +E+ + +Q QL+ LKQ
Sbjct: 3 RQRVLQLYKTILRLHR-ALPTELQELGNQYVRDEFRRHKGIAPEHVAPFMMEWAQYCSSLAEQVGLKGPKSAQRLGRSLGEEKLDHFEPQQIYQLYELKQ 101
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: UPI001E278D08 (succinate dehydrogenase assembly factor 3, mitochondrial n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E278D08) HSP 1 Score: 61.6 bits (148), Expect = 8.080e-10 Identity = 44/105 (41.90%), Postives = 57/105 (54.29%), Query Frame = 1
Query: 61 MNSNNGRLAVLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQLRDQSG---------GVGRSMSDEEAANLNDEQREQLFRL 348
MN N+ R L LYK IL +R LP +ELG+ YVR EFK HK +Q FM W +Y L +Q G GVG+S+++EE ND+Q QL+ L
Sbjct: 1 MNPNHLRQVRL-LYKVILKLNR-GLPSALKELGNTYVRDEFKRHKNCDQDQAKIFMTEWTNYALDLSNQLGVKGIKEGLSGVGKSLTEEELEKFNDDQILQLYDL 103
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: UPI0005CF75C1 (succinate dehydrogenase assembly factor 3, mitochondrial n=1 Tax=Ceratosolen solmsi marchali TaxID=326594 RepID=UPI0005CF75C1) HSP 1 Score: 61.2 bits (147), Expect = 1.220e-9 Identity = 41/95 (43.16%), Postives = 52/95 (54.74%), Query Frame = 1
Query: 88 VLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQLRDQ--------SGGVGRSMSDEEAANLNDEQREQLFRL 348
V RLYK IL HR SLP+ +ELGD YV+SEFK HK + D F+ W Y L DQ + +G+S+ E+ L DEQ QL+ L
Sbjct: 11 VSRLYKMILRLHR-SLPKDIKELGDVYVKSEFKRHKKCNSYEADVFIKEWMDYALSLSDQLNIRNSLNAKSLGKSLKKEDFEILRDEQIYQLYEL 104
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: A0DBG4_PARTE (Succinate dehydrogenase assembly factor 3 n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DBG4_PARTE) HSP 1 Score: 60.8 bits (146), Expect = 1.300e-9 Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 91 LRLYKDILSQHRYSLPQRYRELGDRYVRSEFK-AHKGATGEQVDQFMHGWQSYLDQLRDQSGGVGRSMSDEEAANLNDEQREQLFRLKQ 354
++++ IL QHR L R LGD YV+ EF+ AH+ A EQ +F+ W Y+++L D+S +GR ++ EE A LN++Q + L +LK+
Sbjct: 9 MQVFYTILKQHRRKLRPEMRILGDAYVKEEFRQAHQKANQEQYIEFLKRWAIYIEEL-DKSKQIGRDLTSEEKALLNEDQIDNLAKLKE 96
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: A0A813R1I0_9BILA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813R1I0_9BILA) HSP 1 Score: 60.8 bits (146), Expect = 1.720e-9 Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 1
Query: 67 SNNGRLAVLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQLRDQSGG-----VGRSMSDEEAANLNDEQREQLFRLKQQTS 363
S + V RLYK I H+ SLP +++GD YVR EFK HK A EQ FM+ W +Y+ L Q +G+ + + + N N+ Q QL+ L ++T+
Sbjct: 10 SKQHQQTVKRLYKIIFRLHK-SLPGELKQIGDSYVRHEFKLHKNANPEQTSLFMNEWANYVQILMKQVNPKFKQKIGQDLGESKLNNFNENQVRQLYELFKETT 112 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50822.12337.1 >prot_H-elongata_contig50822.12337.1 ID=prot_H-elongata_contig50822.12337.1|Name=mRNA_H-elongata_contig50822.12337.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp CCLAFRVLRPRTLSLGKLEDMNSNNGRLAVLRLYKDILSQHRYSLPQRYRback to top mRNA from alignment at H-elongata_contig50822:291..2801- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50822.12337.1 ID=mRNA_H-elongata_contig50822.12337.1|Name=mRNA_H-elongata_contig50822.12337.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2511bp|location=Sequence derived from alignment at H-elongata_contig50822:291..2801- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50822:291..2801- >mRNA_H-elongata_contig50822.12337.1 ID=mRNA_H-elongata_contig50822.12337.1|Name=mRNA_H-elongata_contig50822.12337.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig50822:291..2801- (Himanthalia elongata Himel1 dioecious)back to top |