prot_H-elongata_contig50822.12337.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50822.12337.1
Unique Nameprot_H-elongata_contig50822.12337.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length123
Homology
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: D8LG49_ECTSI (Succinate dehydrogenase assembly factor 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG49_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 4.570e-38
Identity = 67/94 (71.28%), Postives = 81/94 (86.17%), Query Frame = 0
Query:   30 VLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQLRDQSGGVGRSMSDEEAANLNDEQREQLFRLKQQTSAS 123
            V RLYKDIL QHR++LP ++RELGDRYVRSEFKAHK ATG+QV QFMH W+SYL+QLR+Q G VGRS+S  + ++LNDEQR+QL RLKQQ S+S
Sbjct:   11 VKRLYKDILRQHRFALPPKHRELGDRYVRSEFKAHKEATGDQVAQFMHAWRSYLEQLRNQGGQVGRSLSAADVSHLNDEQRKQLVRLKQQASSS 104          
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: L1JE82_GUITC (Succinate dehydrogenase assembly factor 3 n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JE82_GUITC)

HSP 1 Score: 77.8 bits (190), Expect = 3.520e-16
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 0
Query:   27 RLAVLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQLRDQ--SGGVGRSMSDEEAANLNDEQREQLFRLKQQ 119
            R A++ LY+ IL  H+  LP   +ELGD YVRSEFK HK A   +V  F   W+ YL  +  Q  SG  GR++ +EEAA+LN EQ+E L RL+++
Sbjct:    7 RTAMISLYRKILRLHKRVLPNEMKELGDSYVRSEFKQHKKAKVGEVKVFARQWKEYLYTIEAQAASGTFGRNLREEEAAHLNQEQKENLKRLEEE 101          
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: A0A7S0W326_9CRYP (Succinate dehydrogenase assembly factor 3 n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W326_9CRYP)

HSP 1 Score: 77.0 bits (188), Expect = 1.430e-15
Identity = 48/120 (40.00%), Postives = 69/120 (57.50%), Query Frame = 0
Query:    3 LAFRVLRPRTLSLGKLEDMNSNNGRLAVLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQL--RDQSGGVGRSMSDEEAANLNDEQREQLFRLKQQT 120
            L  R  R     LG    M S   + ++L LY+ +L  H+  LPQ  +ELGD+Y RSEFKAHK A   QV QF+  W+ Y+  L  + Q G  GR +   +   ++DEQREQL +L++++
Sbjct:   10 LLLRASRGEGGELGSC-GMASAFSKTSMLNLYRSVLRIHKRVLPQEMKELGDKYARSEFKAHKTAKIGQVKQFVQQWKEYVYTLDIQAQKGAFGRDLDSSKMDKMSDEQREQLKQLEEES 128          
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: A0A7S2G7W5_9STRA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7W5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.530e-13
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 0
Query:   30 VLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQLR--DQSGGVGRSMSDEEAANLNDEQREQLFRLKQQT 120
             L LY+ IL  HR +LP   RELGD+YVRSEF+ H+ A+ E ++ F   W+ YL+ L+  D   G GR + +E +A + DEQ++ L +L ++T
Sbjct:    4 ALSLYRSILRGHR-TLPAEMRELGDKYVRSEFRQHQAASPEFLETFFSEWEGYLETLQTSDSKTGFGRPLGEEISA-MTDEQKQMLLKLAEET 94          
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: A0A7S4MXT2_9EUKA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MXT2_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 6.870e-13
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 0
Query:   29 AVLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQL-RDQSGGVGRSMSDEEAANLNDEQREQLFRL 116
            + ++LY+ +L  HR  LP  +RELGD YV++EF+ H+ A    + QF   W+ YL Q+ R     VGR MS EE   L+DEQ+ QL ++
Sbjct:   13 SFVKLYRAVLRAHRTHLPAAHRELGDTYVKAEFRLHQDAKPAFLQQFERQWRDYLKQITRPNEEHVGRGMSAEEVEALSDEQKVQLLKI 101          
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: A0A8J2LFQ2_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2LFQ2_9HEXA)

HSP 1 Score: 65.9 bits (159), Expect = 1.960e-11
Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 0
Query:   27 RLAVLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQLRDQSG--------GVGRSMSDEEAANLNDEQREQLFRLKQ 118
            R  VL+LYK IL  HR +LP   +ELG++YVR EF+ HKG   E V  FM  W  Y   L +Q G         +GRS+ +E+  +   +Q  QL+ LKQ
Sbjct:    3 RQRVLQLYKTILRLHR-ALPTELQELGNQYVRDEFRRHKGIAPEHVAPFMMEWAQYCSSLAEQVGLKGPKSAQRLGRSLGEEKLDHFEPQQIYQLYELKQ 101          
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: UPI001E278D08 (succinate dehydrogenase assembly factor 3, mitochondrial n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E278D08)

HSP 1 Score: 61.6 bits (148), Expect = 8.080e-10
Identity = 44/105 (41.90%), Postives = 57/105 (54.29%), Query Frame = 0
Query:   21 MNSNNGRLAVLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQLRDQSG---------GVGRSMSDEEAANLNDEQREQLFRL 116
            MN N+ R   L LYK IL  +R  LP   +ELG+ YVR EFK HK    +Q   FM  W +Y   L +Q G         GVG+S+++EE    ND+Q  QL+ L
Sbjct:    1 MNPNHLRQVRL-LYKVILKLNR-GLPSALKELGNTYVRDEFKRHKNCDQDQAKIFMTEWTNYALDLSNQLGVKGIKEGLSGVGKSLTEEELEKFNDDQILQLYDL 103          
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: UPI0005CF75C1 (succinate dehydrogenase assembly factor 3, mitochondrial n=1 Tax=Ceratosolen solmsi marchali TaxID=326594 RepID=UPI0005CF75C1)

HSP 1 Score: 61.2 bits (147), Expect = 1.220e-9
Identity = 41/95 (43.16%), Postives = 52/95 (54.74%), Query Frame = 0
Query:   30 VLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQLRDQ--------SGGVGRSMSDEEAANLNDEQREQLFRL 116
            V RLYK IL  HR SLP+  +ELGD YV+SEFK HK     + D F+  W  Y   L DQ        +  +G+S+  E+   L DEQ  QL+ L
Sbjct:   11 VSRLYKMILRLHR-SLPKDIKELGDVYVKSEFKRHKKCNSYEADVFIKEWMDYALSLSDQLNIRNSLNAKSLGKSLKKEDFEILRDEQIYQLYEL 104          
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: A0DBG4_PARTE (Succinate dehydrogenase assembly factor 3 n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DBG4_PARTE)

HSP 1 Score: 60.8 bits (146), Expect = 1.300e-9
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 0
Query:   31 LRLYKDILSQHRYSLPQRYRELGDRYVRSEFK-AHKGATGEQVDQFMHGWQSYLDQLRDQSGGVGRSMSDEEAANLNDEQREQLFRLKQ 118
            ++++  IL QHR  L    R LGD YV+ EF+ AH+ A  EQ  +F+  W  Y+++L D+S  +GR ++ EE A LN++Q + L +LK+
Sbjct:    9 MQVFYTILKQHRRKLRPEMRILGDAYVKEEFRQAHQKANQEQYIEFLKRWAIYIEEL-DKSKQIGRDLTSEEKALLNEDQIDNLAKLKE 96          
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Match: A0A813R1I0_9BILA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813R1I0_9BILA)

HSP 1 Score: 60.8 bits (146), Expect = 1.720e-9
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 0
Query:   23 SNNGRLAVLRLYKDILSQHRYSLPQRYRELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQLRDQSGG-----VGRSMSDEEAANLNDEQREQLFRLKQQTS 121
            S   +  V RLYK I   H+ SLP   +++GD YVR EFK HK A  EQ   FM+ W +Y+  L  Q        +G+ + + +  N N+ Q  QL+ L ++T+
Sbjct:   10 SKQHQQTVKRLYKIIFRLHK-SLPGELKQIGDSYVRHEFKLHKNANPEQTSLFMNEWANYVQILMKQVNPKFKQKIGQDLGESKLNNFNENQVRQLYELFKETT 112          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50822.12337.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG49_ECTSI4.570e-3871.28Succinate dehydrogenase assembly factor 3 n=2 Tax=... [more]
L1JE82_GUITC3.520e-1647.37Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A7S0W326_9CRYP1.430e-1540.00Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A7S2G7W5_9STRA6.530e-1343.01Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A7S4MXT2_9EUKA6.870e-1342.70Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A8J2LFQ2_9HEXA1.960e-1142.00Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
UPI001E278D088.080e-1041.90succinate dehydrogenase assembly factor 3, mitocho... [more]
UPI0005CF75C11.220e-943.16succinate dehydrogenase assembly factor 3, mitocho... [more]
A0DBG4_PARTE1.300e-940.45Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A813R1I0_9BILA1.720e-936.54Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13233Complex1_LYR_2coord: 30..110
e-value: 5.6E-15
score: 55.9
IPR008381Succinate dehydrogenase assembly factor 3, mitochondrialPANTHERPTHR13137DC11 ACN9 HOMOLOGcoord: 30..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50822contigH-elongata_contig50822:291..2801 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50822.12337.1mRNA_H-elongata_contig50822.12337.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50822 291..2801 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50822.12337.1 ID=prot_H-elongata_contig50822.12337.1|Name=mRNA_H-elongata_contig50822.12337.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
CCLAFRVLRPRTLSLGKLEDMNSNNGRLAVLRLYKDILSQHRYSLPQRYR
ELGDRYVRSEFKAHKGATGEQVDQFMHGWQSYLDQLRDQSGGVGRSMSDE
EAANLNDEQREQLFRLKQQTSAS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008381SDHAF3/Sdh7