mRNA_H-elongata_contig50762.12326.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 132 bits (331), Expect = 4.330e-33 Identity = 78/195 (40.00%), Postives = 119/195 (61.03%), Query Frame = 1
Query: 1 VVVVVHVDDITAHAKDKATVDRFAAELG*RFKLKDMDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSKIPATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYG-GQGCGLCMEACTDSDFGACLDTRRSMSG 582
V +VVHVDDI + +++ D+F +L +K++ D R+Y GC+ R+ A LKI+Q Y E + +F V+ G +IP G+ LS D + EE+ +P+RE++G+LMW AT TR +IA+AVRAVAR+C +P H +A + I+ Y++ T D GI++ G GL ME D+D+ + RRS+SG
Sbjct: 118 VTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSG 304
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6A4DAE2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DAE2_9STRA) HSP 1 Score: 127 bits (319), Expect = 6.090e-33 Identity = 76/195 (38.97%), Postives = 120/195 (61.54%), Query Frame = 1
Query: 4 VVVVHVDDITAHAKDKATVDRFAAELG*RFKLKDMDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSKIPATSGVPT--LSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYGGQGCGLCMEACTDSDFGACLDTRRSMSG 582
+V ++VDD+ ++ KA + A + +F++KD+ AR+ +G I + + R L I+Q Y ES++ KF ++ +K T P L++ADEP+ E+K +M+ PYR +VG+LM+ A TR +I+ AV ++RF ENPG H A +K+++YLL TKD GI Y G G +E +D+D+ D RRS+SG
Sbjct: 23 IVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFG-QENAKPCLTPPEPAVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEGYSDADWAGNRDDRRSVSG 215
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE) HSP 1 Score: 129 bits (324), Expect = 6.740e-33 Identity = 77/195 (39.49%), Postives = 119/195 (61.03%), Query Frame = 1
Query: 1 VVVVVHVDDITAHAKDKATVDRFAAELG*RFKLKDMDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSKIPATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYG-GQGCGLCMEACTDSDFGACLDTRRSMSG 582
V +VVHVDDI + +++ D+F +L ++K++ D +Y GC+ R+ A LKI+Q Y E + +F V+ G +IP G+ LS D + EE+ +P+RE++G+LMW AT TR +IA+AVRAVAR+C +P H +A + I+ Y++ T D GI++ G GL ME D+D+ + RRS+SG
Sbjct: 17 VTLVVHVDDIFSIGEEER-YDQFGRDLNTMVRVKNLGDLIWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGM-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSG 203
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6A4F359_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F359_9STRA) HSP 1 Score: 130 bits (327), Expect = 9.800e-33 Identity = 79/195 (40.51%), Postives = 120/195 (61.54%), Query Frame = 1
Query: 4 VVVVHVDDITAHAKDKATVDRFAAELG*RFKLKDMDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVK--KGSKIPATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYGGQGCGLCMEACTDSDFGACLDTRRSMSG 582
+V ++VDD+ ++ KA + A + +F++KDM AR+ +G I + + R L I+Q Y ES++ KF + K P GV L++ADEP+ E+K +M+ PYR +VG+LM+ A TR +I+ AV ++RF ENPG H A +K+++YLL TKD GI Y G G +EA +D+D+ D RRS+SG
Sbjct: 73 IVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQIEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSG 265
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 132 bits (331), Expect = 2.350e-32 Identity = 78/195 (40.00%), Postives = 119/195 (61.03%), Query Frame = 1
Query: 1 VVVVVHVDDITAHAKDKATVDRFAAELG*RFKLKDMDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSKIPATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYG-GQGCGLCMEACTDSDFGACLDTRRSMSG 582
V +VVHVDDI + +++ D+F +L +K++ D R+Y GC+ R+ A LKI+Q Y E + +F V+ G +IP G+ LS D + EE+ +P+RE++G+LMW AT TR +IA+AVRAVAR+C +P H +A + I+ Y++ T D GI++ G GL ME D+D+ + RRS+SG
Sbjct: 292 VTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSG 478
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL) HSP 1 Score: 130 bits (328), Expect = 2.750e-32 Identity = 72/191 (37.70%), Postives = 113/191 (59.16%), Query Frame = 1
Query: 16 HVDDITAHAKDKATVDRFAAELG*RFKLKDMDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSKI--PATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYGGQGCGLCMEACTDSDFGACLDTRRSMSG 582
+VDD+ + + VD + RF++K++ ++ +G I +R R L INQ YV+++V +FN + + P + LS+AD PR+ ++K EM K PYR ++G L + A TR +IA AV ++RF ENPGP H A +++++YL T+D+GISYGG D+D+G +D RRS+SG
Sbjct: 188 YVDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSL-KLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPVVFCDADWGTSVDDRRSVSG 377
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 132 bits (331), Expect = 4.190e-32 Identity = 78/195 (40.00%), Postives = 119/195 (61.03%), Query Frame = 1
Query: 1 VVVVVHVDDITAHAKDKATVDRFAAELG*RFKLKDMDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSKIPATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYG-GQGCGLCMEACTDSDFGACLDTRRSMSG 582
V +VVHVDDI + +++ D+F +L +K++ D R+Y GC+ R+ A LKI+Q Y E + +F V+ G +IP G+ LS D + EE+ +P+RE++G+LMW AT TR +IA+AVRAVAR+C +P H +A + I+ Y++ T D GI++ G GL ME D+D+ + RRS+SG
Sbjct: 813 VTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSG 999
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6A3HKQ8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HKQ8_9STRA) HSP 1 Score: 127 bits (319), Expect = 9.770e-32 Identity = 77/195 (39.49%), Postives = 118/195 (60.51%), Query Frame = 1
Query: 4 VVVVHVDDITAHAKDKATVDRFAAELG*RFKLKDMDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVK--KGSKIPATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYGGQGCGLCMEACTDSDFGACLDTRRSMSG 582
+V ++VDD+ ++ K + A + +F++KD+ AR+ +G I + + R L I+Q Y ES++ KF + K P GV L++ADEP+ E K +M+ PYR +VG+LM+ A TR +I+ AV ++RF ENPG H A +K+++YLL TKD GI Y G G +EA +D+D+ D RRS+SG
Sbjct: 104 IVCLYVDDMLIASRQKTVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEVKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSG 296
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA) HSP 1 Score: 130 bits (327), Expect = 1.040e-31 Identity = 78/195 (40.00%), Postives = 120/195 (61.54%), Query Frame = 1
Query: 4 VVVVHVDDITAHAKDKATVDRFAAELG*RFKLKDMDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVK--KGSKIPATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYGGQGCGLCMEACTDSDFGACLDTRRSMSG 582
+V ++VDD+ ++ KA + A + +F++KDM AR+ +G I + + R L I+Q Y ES++ KF + K P GV L++ADEP+ E+K +M+ PYR +VG+LM+ + TR +I+ AV ++RF ENPG H A +K+++YLL TKD GI Y G G +EA +D+D+ D RRS+SG
Sbjct: 330 IVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSG 522
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA) HSP 1 Score: 128 bits (321), Expect = 1.150e-31 Identity = 76/195 (38.97%), Postives = 119/195 (61.03%), Query Frame = 1
Query: 4 VVVVHVDDITAHAKDKATVDRFAAELG*RFKLKDMDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSK--IPATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYGGQGCGLCMEACTDSDFGACLDTRRSMSG 582
+V ++VDD+ ++ KA + A + +F++KD+ AR+ +G I + + R L I+Q Y ES++ KF + P GV L++ADEP+ E+K +M+ PYR +VG+LM+ A TR +I+ AV ++RF ENPG H A +K+++YLL TKD GI Y G G +EA +D+++ D RRS+SG
Sbjct: 104 IVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPWLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDANWAGNRDDRRSVSG 296 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50762.12326.1 >prot_H-elongata_contig50762.12326.1 ID=prot_H-elongata_contig50762.12326.1|Name=mRNA_H-elongata_contig50762.12326.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp MDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSKIPATSGVback to top mRNA from alignment at H-elongata_contig50762:55..636- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50762.12326.1 ID=mRNA_H-elongata_contig50762.12326.1|Name=mRNA_H-elongata_contig50762.12326.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=582bp|location=Sequence derived from alignment at H-elongata_contig50762:55..636- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50762:55..636- >mRNA_H-elongata_contig50762.12326.1 ID=mRNA_H-elongata_contig50762.12326.1|Name=mRNA_H-elongata_contig50762.12326.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig50762:55..636- (Himanthalia elongata Himel1 dioecious)back to top |