prot_H-elongata_contig50762.12326.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50762.12326.1
Unique Nameprot_H-elongata_contig50762.12326.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length159
Homology
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 7.310e-28
Identity = 66/160 (41.25%), Postives = 98/160 (61.25%), Query Frame = 0
Query:    1 MDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSKIPATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYG-GQGCGLCMEACTDSDFGACLDTRRSMSG 159
            + D R+Y GC+  R+  A  LKI+Q  Y E +  +F V+ G +IP   G+  LS  D      + EE+  +P+RE++G+LMW AT TR +IA+AVRAVAR+C +P   H +A + I+ Y++ T D GI++  G   GL ME   D+D+ +    RRS+SG
Sbjct:  152 LGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSG 304          
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.280e-27
Identity = 66/160 (41.25%), Postives = 98/160 (61.25%), Query Frame = 0
Query:    1 MDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSKIPATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYG-GQGCGLCMEACTDSDFGACLDTRRSMSG 159
            + D R+Y GC+  R+  A  LKI+Q  Y E +  +F V+ G +IP   G+  LS  D      + EE+  +P+RE++G+LMW AT TR +IA+AVRAVAR+C +P   H +A + I+ Y++ T D GI++  G   GL ME   D+D+ +    RRS+SG
Sbjct:  326 LGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSG 478          
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.660e-27
Identity = 65/160 (40.62%), Postives = 98/160 (61.25%), Query Frame = 0
Query:    1 MDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSKIPATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYG-GQGCGLCMEACTDSDFGACLDTRRSMSG 159
            + D R+Y GC+  R+  A  LKI+Q  Y E +  +F V+ G +IP   G+  LS  D      + EE+  +P+RE++G+LMW AT TR +IA+AVRAVAR+C +P   H +A + I+ Y++ T + GI++  G   GL ME   D+D+ +    RRS+SG
Sbjct:   93 LGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYVVRTSELGITFRRGSVAGLSMEVFADADYASKAADRRSVSG 245          
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.920e-27
Identity = 66/160 (41.25%), Postives = 98/160 (61.25%), Query Frame = 0
Query:    1 MDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSKIPATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYG-GQGCGLCMEACTDSDFGACLDTRRSMSG 159
            + D R+Y GC+  R+  A  LKI+Q  Y E +  +F V+ G +IP   G+  LS  D      + EE+  +P+RE++G+LMW AT TR +IA+AVRAVAR+C +P   H +A + I+ Y++ T D GI++  G   GL ME   D+D+ +    RRS+SG
Sbjct:  847 LGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSG 999          
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.310e-27
Identity = 65/160 (40.62%), Postives = 97/160 (60.62%), Query Frame = 0
Query:    1 MDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSKIPATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYG-GQGCGLCMEACTDSDFGACLDTRRSMSG 159
            + D  +Y GC+  R+  A  LKI+Q  Y E +  +F V+ G +IP   G+  LS  D      + EE+  +P+RE++G+LMW AT TR +IA+AVRAVAR+C +P   H +A + I+ Y++ T D GI++  G   GL ME   D+D+ +    RRS+SG
Sbjct:   51 LGDLIWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGM-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSG 203          
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 6.610e-27
Identity = 65/160 (40.62%), Postives = 95/160 (59.38%), Query Frame = 0
Query:    1 MDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSKIPATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYG-GQGCGLCMEACTDSDFGACLDTRRSMSG 159
            + D R+Y GC   R+  AR LKI+Q  Y + +   F V+ G +I    G+  LS  D      + EE+  +P+RE++G+LMW AT TR  IA+A RAVAR+C +P   H +A + I+ Y++ T D GI++G G   GL ME   D+D+ +    RRS+SG
Sbjct:    7 LGDLRWYSGCVYERDWDARILKISQQTYAQELGMDFGVEYGKEILFPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSG 159          
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 114 bits (286), Expect = 6.910e-27
Identity = 64/157 (40.76%), Postives = 96/157 (61.15%), Query Frame = 0
Query:    5 RYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSKI--PATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYGGQGCGLCMEACTDSDFGACLDTRRSMSG 159
            ++ +G  I  +R  R L INQ  YV+++V +FN +    +  P    +  LS+AD PR+ ++K EM K PYR ++G L + A  TR +IA AV  ++RF ENPGP H  A +++++YL  T+D+GISYGG           D+D+G  +D RRS+SG
Sbjct:  222 KHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSL-KLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPVVFCDADWGTSVDDRRSVSG 377          
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6A3GCN4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GCN4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.960e-26
Identity = 68/161 (42.24%), Postives = 97/161 (60.25%), Query Frame = 0
Query:    1 MDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSKI--PATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYGGQGCGLCMEACTDSDFGACLDTRRSMSG 159
            M  AR+ +G  I  + + R L I+Q  Y ES++ KF  +       P   GV  L++ADEP+  E+K +M+  PYR +VG+LM+ A  TR +I+ AV  ++RF ENPG  H  A +K++ YLL TKD GI Y G   G  +EA +D+D+    D RRS+SG
Sbjct:   75 MGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPYLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVHYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSG 233          
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA)

HSP 1 Score: 110 bits (274), Expect = 4.240e-26
Identity = 68/161 (42.24%), Postives = 98/161 (60.87%), Query Frame = 0
Query:    1 MDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVK--KGSKIPATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYGGQGCGLCMEACTDSDFGACLDTRRSMSG 159
            M  AR+ +G  I  + + R L I+   Y ES++ KF  +  K    P   GV  L++ADEP+  E+K +M+  PYR +VG+LM+ A  TR +I+ AV  ++RF ENPG  H  A +K+++YLL TKD GI Y G   G  +EA +D+D+    D RRS+SG
Sbjct:   27 MGRARFILGIEIDYDMERRTLGISHKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSG 185          
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 4.730e-26
Identity = 64/160 (40.00%), Postives = 98/160 (61.25%), Query Frame = 0
Query:    1 MDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSKIPATSGVPTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKDWGISYG-GQGCGLCMEACTDSDFGACLDTRRSMSG 159
            + D R+Y GC+  R+  A  LKI+Q  Y E +  +F V+ G +IP   G+  LS  D      + EE+  +P+RE++G+L+W AT TR +IA+A+RAVAR+C +P   H +A + I+ Y++ T D GI++G G    L ME   D+D+ +    RRS+SG
Sbjct:  843 LGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-VLSEFD------QDEEVVSWPFRELIGSLVWLATQTRPDIANALRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAMLSMEVFGDADYASKAADRRSVSG 995          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50762.12326.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE7.310e-2841.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE2.280e-2741.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L0Z9_9PHAE2.660e-2740.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE2.920e-2741.25Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KR24_9PHAE4.310e-2740.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD60_9PHAE6.610e-2740.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K1CTN1_PYTOL6.910e-2740.76Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A6A3GCN4_9STRA1.960e-2642.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3GI70_9STRA4.240e-2642.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LC04_9PHAE4.730e-2640.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50762contigH-elongata_contig50762:55..531 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50762.12326.1mRNA_H-elongata_contig50762.12326.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50762 55..636 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50762.12326.1 ID=prot_H-elongata_contig50762.12326.1|Name=mRNA_H-elongata_contig50762.12326.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
MDDARYYMGCYITRNRKARELKINQHLYVESMVGKFNVKKGSKIPATSGV
PTLSRADEPRNPEEKEEMRKFPYREVVGALMWTATLTRSEIASAVRAVAR
FCENPGPAHKKAVMKIMQYLLHTKDWGISYGGQGCGLCMEACTDSDFGAC
LDTRRSMSG
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