mRNA_H-elongata_contig50420.12277.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: D7G1S6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1S6_ECTSI) HSP 1 Score: 207 bits (528), Expect = 4.430e-63 Identity = 106/141 (75.18%), Postives = 121/141 (85.82%), Query Frame = 1
Query: 1 RSRGALFRMTPEDKRSSLRASGVKPPRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWYQRDRRRS 423
+SRGAL RM+ E+KR LRA+GV+PPRKR L ES D D L+DLMLP MDEAVRRDVL+ARAWR GDFA AGELCA KSERHIVAEQLQ A+KD+DQ+LA ILM+RLEIL+SCRMD TQD GSYQ+DLD DEWY+ DRRR+
Sbjct: 280 KSRGALSRMSVEEKRECLRATGVRPPRKRALSESEDPDRDLEDLMLPRMDEAVRRDVLMARAWREGDFATAGELCAGKSERHIVAEQLQAALKDNDQDLASILMQRLEILESCRMDPTQDEGSYQRDLDVDEWYEADRRRA 420
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A835ZMI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMI0_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.320e-26 Identity = 65/143 (45.45%), Postives = 89/143 (62.24%), Query Frame = 1
Query: 1 RSRGALFRMTPEDKRSSLRASGVKPPRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWYQRDRRRSQG 429
+S F++ KR+ LR +GV+PPR+R+ + L +L+LPL+DE VRRDV+L RA D+A A +L SER +V L AV+++D E A L RLE+L + R D TQD GSY + LDADEWY R+R R+ G
Sbjct: 273 KSAARYFKLDSAAKRAVLRGAGVRPPRRRMASAAR-----LDELLLPLLDETVRRDVMLRRALAREDYAAAAQLGGAGSERAVVKHALADAVEEEDYEAANRLRARLEVLTALRADVTQDEGSYDRYLDADEWYVRERMRAMG 410
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A7S1U145_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U145_9STRA) HSP 1 Score: 100 bits (248), Expect = 3.890e-22 Identity = 59/128 (46.09%), Postives = 75/128 (58.59%), Query Frame = 1
Query: 19 FRMTPEDKRSSLRASGVKPPRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWY 402
F++T +KR+ L SG PR+ + L +LPL+DE VRRDV L +A RAGD EL ++SER V QL+ AV D+D LA L +L++LD CR D TQD GSY LDAD WY
Sbjct: 266 FKLTLAEKRALLARSGADVPRRG------RGEAALDSALLPLLDENVRRDVQLMKALRAGDMERVSELSQNRSERGSVKMQLESAVADEDYALAAELQAKLDVLDRCRADITQDEGSYDPYLDADPWY 387
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A7S2RI23_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RI23_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 1.830e-20 Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 1
Query: 34 EDKRSSLRAS----GVKPPRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWYQRDRRRSQG 429
EDK +L AS G P ++V LE V L DL+LP+MDEAVRR+V+L RA D+A L ADKS R + +++Q A ++++A L LE+ + R D TQD G Y LD D+WY+RDRRR+ G
Sbjct: 212 EDKARTLLASENYQGPLPRARKVRLEGDGV---LDDLLLPVMDEAVRREVMLERAIAQRDWAEIQRLSADKSVRSKLRDEVQRAEDSGEEDVARRLRRELELASTLRADITQDSGDYSSFLDKDDWYERDRRRAMG 344
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A7S2PQW3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PQW3_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 3.630e-18 Identity = 47/113 (41.59%), Postives = 68/113 (60.18%), Query Frame = 1
Query: 76 PRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWYQRDR 414
PR RV+ E+ + L DL+LPL+DE VRR V + +A + GD +A EL +S+R E + A +D ++ LA + + E+L + D TQD G+Y LD DEWY+RDR
Sbjct: 125 PRPRVIREAGNTAKPLDDLLLPLIDEGVRRQVKIRKALKEGDTELANELQKGRSKRQQARELAEAARRDGNEALADMWSDEAELLSDLKADATQDEGTYSSFLDKDEWYERDR 237
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A0G4GJY9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GJY9_VITBC) HSP 1 Score: 89.0 bits (219), Expect = 7.300e-18 Identity = 55/130 (42.31%), Postives = 74/130 (56.92%), Query Frame = 1
Query: 25 MTPEDKRSSLRASG--VKPPRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWYQR 408
M DKR + AS + PR+ S + ++D++L LMDEAVRR V++ RA GDF +A L ADKS+R + E +Q A D + A L ERLE+L + D T + GSY + LD DEWY R
Sbjct: 337 MDDGDKRRCILASNPLARLPRRG----SEESQSKVEDMLLNLMDEAVRRQVMIKRASERGDFQLAARLVADKSDRQQIKELMQEAADAGDYKTAAELKERLEVLTMAKWDVTAEEGSYSRFLDQDEWYAR 462
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A8J2SZT1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZT1_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.390e-17 Identity = 53/121 (43.80%), Postives = 73/121 (60.33%), Query Frame = 1
Query: 76 PRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLE--ILDSCRMDTTQDVGSYQKDLDADEWYQRDRRRSQGS 432
PR RV+ + D + +L++PL+DEAVRRD+ + A + GD A A L A KS+RH ++ A D D LAG L R + + + R D TQD GSY + LD DEWY+R RRR+ G+
Sbjct: 344 PRPRVI-NAAGNDAPVDELLIPLLDEAVRRDLAVEAALKRGDIAGAAALMAGKSKRHAARDRAAQASADGD--LAGELRARDDEAVYSAIRADITQDEGSYSRFLDKDEWYERQRRRTNGA 461
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A7R9U4Z2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4Z2_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.300e-16 Identity = 49/115 (42.61%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 58 ASGVKPPRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWY 402
ASG+ PPR+ E+ D +L+LP +DE VRRDV + A R GD L ++S R + +L+ AV D+D A L +L+ILD R D +QD GSY + LDAD WY
Sbjct: 115 ASGLTPPRRARGEEALD------ELLLPNLDEDVRRDVQIMEAMRQGDMQEVARLTEERSRRGQLRNELRAAVADEDYSRAAELQRQLKILDRGRADVSQDEGSYDRFLDADPWY 223
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A7S0TCN8_9STRA (Hypothetical protein n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TCN8_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.450e-16 Identity = 55/137 (40.15%), Postives = 77/137 (56.20%), Query Frame = 1
Query: 25 MTPEDKRSSLRASGVKPPRKRVLLESTDVDIYLQD-LMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWYQRDRRRSQGS 432
M+ E + + A+G++PPR R L D+ D ++LP +DE VRR+VL+ RA +AGD A EL A KS RH ++++ A DD ++ ILD+ R D TQD SY LD D WY+ RRR G+
Sbjct: 240 MSLEQRLRVIVAAGLEPPRPRRL------DVAAVDAVVLPRVDEIVRREVLVERAIKAGDLKRANELMAGKSPRHRAFDEVREAADGDDLFKEAAARDKKAILDATRADPTQDPFSYDPYLDQDPWYEEQRRRIMGT 370
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A7R9U507_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U507_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 7.890e-16 Identity = 49/115 (42.61%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 58 ASGVKPPRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWY 402
ASG+ PPR+ E+ D +L+LP +DE VRRDV + A R GD L ++S R + +L+ AV D+D A L +L+ILD R D +QD GSY + LDAD WY
Sbjct: 275 ASGLTPPRRARGEEALD------ELLLPNLDEDVRRDVQIMEAMRQGDMQEVARLTEERSRRGQLRNELRAAVADEDYSRAAELQRQLKILDRGRADVSQDEGSYDRFLDADPWY 383 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50420.12277.1 >prot_H-elongata_contig50420.12277.1 ID=prot_H-elongata_contig50420.12277.1|Name=mRNA_H-elongata_contig50420.12277.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp MTPEDKRSSLRASGVKPPRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLback to top mRNA from alignment at H-elongata_contig50420:148..1245+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50420.12277.1 ID=mRNA_H-elongata_contig50420.12277.1|Name=mRNA_H-elongata_contig50420.12277.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1098bp|location=Sequence derived from alignment at H-elongata_contig50420:148..1245+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50420:148..1245+ >mRNA_H-elongata_contig50420.12277.1 ID=mRNA_H-elongata_contig50420.12277.1|Name=mRNA_H-elongata_contig50420.12277.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig50420:148..1245+ (Himanthalia elongata Himel1 dioecious)back to top |