mRNA_H-elongata_contig50420.12277.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50420.12277.1
Unique NamemRNA_H-elongata_contig50420.12277.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: D7G1S6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1S6_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 4.430e-63
Identity = 106/141 (75.18%), Postives = 121/141 (85.82%), Query Frame = 1
Query:    1 RSRGALFRMTPEDKRSSLRASGVKPPRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWYQRDRRRS 423
            +SRGAL RM+ E+KR  LRA+GV+PPRKR L ES D D  L+DLMLP MDEAVRRDVL+ARAWR GDFA AGELCA KSERHIVAEQLQ A+KD+DQ+LA ILM+RLEIL+SCRMD TQD GSYQ+DLD DEWY+ DRRR+
Sbjct:  280 KSRGALSRMSVEEKRECLRATGVRPPRKRALSESEDPDRDLEDLMLPRMDEAVRRDVLMARAWREGDFATAGELCAGKSERHIVAEQLQAALKDNDQDLASILMQRLEILESCRMDPTQDEGSYQRDLDVDEWYEADRRRA 420          
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A835ZMI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMI0_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.320e-26
Identity = 65/143 (45.45%), Postives = 89/143 (62.24%), Query Frame = 1
Query:    1 RSRGALFRMTPEDKRSSLRASGVKPPRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWYQRDRRRSQG 429
            +S    F++    KR+ LR +GV+PPR+R+   +      L +L+LPL+DE VRRDV+L RA    D+A A +L    SER +V   L  AV+++D E A  L  RLE+L + R D TQD GSY + LDADEWY R+R R+ G
Sbjct:  273 KSAARYFKLDSAAKRAVLRGAGVRPPRRRMASAAR-----LDELLLPLLDETVRRDVMLRRALAREDYAAAAQLGGAGSERAVVKHALADAVEEEDYEAANRLRARLEVLTALRADVTQDEGSYDRYLDADEWYVRERMRAMG 410          
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A7S1U145_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U145_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.890e-22
Identity = 59/128 (46.09%), Postives = 75/128 (58.59%), Query Frame = 1
Query:   19 FRMTPEDKRSSLRASGVKPPRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWY 402
            F++T  +KR+ L  SG   PR+         +  L   +LPL+DE VRRDV L +A RAGD     EL  ++SER  V  QL+ AV D+D  LA  L  +L++LD CR D TQD GSY   LDAD WY
Sbjct:  266 FKLTLAEKRALLARSGADVPRRG------RGEAALDSALLPLLDENVRRDVQLMKALRAGDMERVSELSQNRSERGSVKMQLESAVADEDYALAAELQAKLDVLDRCRADITQDEGSYDPYLDADPWY 387          
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A7S2RI23_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RI23_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.830e-20
Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 1
Query:   34 EDKRSSLRAS----GVKPPRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWYQRDRRRSQG 429
            EDK  +L AS    G  P  ++V LE   V   L DL+LP+MDEAVRR+V+L RA    D+A    L ADKS R  + +++Q A    ++++A  L   LE+  + R D TQD G Y   LD D+WY+RDRRR+ G
Sbjct:  212 EDKARTLLASENYQGPLPRARKVRLEGDGV---LDDLLLPVMDEAVRREVMLERAIAQRDWAEIQRLSADKSVRSKLRDEVQRAEDSGEEDVARRLRRELELASTLRADITQDSGDYSSFLDKDDWYERDRRRAMG 344          
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A7S2PQW3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PQW3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.630e-18
Identity = 47/113 (41.59%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   76 PRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWYQRDR 414
            PR RV+ E+ +    L DL+LPL+DE VRR V + +A + GD  +A EL   +S+R    E  + A +D ++ LA +  +  E+L   + D TQD G+Y   LD DEWY+RDR
Sbjct:  125 PRPRVIREAGNTAKPLDDLLLPLIDEGVRRQVKIRKALKEGDTELANELQKGRSKRQQARELAEAARRDGNEALADMWSDEAELLSDLKADATQDEGTYSSFLDKDEWYERDR 237          
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A0G4GJY9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GJY9_VITBC)

HSP 1 Score: 89.0 bits (219), Expect = 7.300e-18
Identity = 55/130 (42.31%), Postives = 74/130 (56.92%), Query Frame = 1
Query:   25 MTPEDKRSSLRASG--VKPPRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWYQR 408
            M   DKR  + AS    + PR+     S +    ++D++L LMDEAVRR V++ RA   GDF +A  L ADKS+R  + E +Q A    D + A  L ERLE+L   + D T + GSY + LD DEWY R
Sbjct:  337 MDDGDKRRCILASNPLARLPRRG----SEESQSKVEDMLLNLMDEAVRRQVMIKRASERGDFQLAARLVADKSDRQQIKELMQEAADAGDYKTAAELKERLEVLTMAKWDVTAEEGSYSRFLDQDEWYAR 462          
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A8J2SZT1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZT1_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.390e-17
Identity = 53/121 (43.80%), Postives = 73/121 (60.33%), Query Frame = 1
Query:   76 PRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLE--ILDSCRMDTTQDVGSYQKDLDADEWYQRDRRRSQGS 432
            PR RV+  +   D  + +L++PL+DEAVRRD+ +  A + GD A A  L A KS+RH   ++   A  D D  LAG L  R +  +  + R D TQD GSY + LD DEWY+R RRR+ G+
Sbjct:  344 PRPRVI-NAAGNDAPVDELLIPLLDEAVRRDLAVEAALKRGDIAGAAALMAGKSKRHAARDRAAQASADGD--LAGELRARDDEAVYSAIRADITQDEGSYSRFLDKDEWYERQRRRTNGA 461          
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A7R9U4Z2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4Z2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.300e-16
Identity = 49/115 (42.61%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   58 ASGVKPPRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWY 402
            ASG+ PPR+    E+ D      +L+LP +DE VRRDV +  A R GD      L  ++S R  +  +L+ AV D+D   A  L  +L+ILD  R D +QD GSY + LDAD WY
Sbjct:  115 ASGLTPPRRARGEEALD------ELLLPNLDEDVRRDVQIMEAMRQGDMQEVARLTEERSRRGQLRNELRAAVADEDYSRAAELQRQLKILDRGRADVSQDEGSYDRFLDADPWY 223          
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A7S0TCN8_9STRA (Hypothetical protein n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TCN8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.450e-16
Identity = 55/137 (40.15%), Postives = 77/137 (56.20%), Query Frame = 1
Query:   25 MTPEDKRSSLRASGVKPPRKRVLLESTDVDIYLQD-LMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWYQRDRRRSQGS 432
            M+ E +   + A+G++PPR R L      D+   D ++LP +DE VRR+VL+ RA +AGD   A EL A KS RH   ++++ A   DD        ++  ILD+ R D TQD  SY   LD D WY+  RRR  G+
Sbjct:  240 MSLEQRLRVIVAAGLEPPRPRRL------DVAAVDAVVLPRVDEIVRREVLVERAIKAGDLKRANELMAGKSPRHRAFDEVREAADGDDLFKEAAARDKKAILDATRADPTQDPFSYDPYLDQDPWYEEQRRRIMGT 370          
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Match: A0A7R9U507_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U507_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 7.890e-16
Identity = 49/115 (42.61%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   58 ASGVKPPRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVLLARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLEILDSCRMDTTQDVGSYQKDLDADEWY 402
            ASG+ PPR+    E+ D      +L+LP +DE VRRDV +  A R GD      L  ++S R  +  +L+ AV D+D   A  L  +L+ILD  R D +QD GSY + LDAD WY
Sbjct:  275 ASGLTPPRRARGEEALD------ELLLPNLDEDVRRDVQIMEAMRQGDMQEVARLTEERSRRGQLRNELRAAVADEDYSRAAELQRQLKILDRGRADVSQDEGSYDRFLDADPWY 383          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50420.12277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1S6_ECTSI4.430e-6375.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZMI0_9STRA1.320e-2645.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1U145_9STRA3.890e-2246.09Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2RI23_9STRA1.830e-2044.12Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2PQW3_9STRA3.630e-1841.59Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A0G4GJY9_VITBC7.300e-1842.31Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A8J2SZT1_9STRA3.390e-1743.80Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9U4Z2_9STRA1.300e-1642.61Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S0TCN8_9STRA1.450e-1640.15Hypothetical protein n=1 Tax=Chrysocystis fragilis... [more]
A0A7R9U507_9STRA7.890e-1642.61Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50420contigH-elongata_contig50420:148..1245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog2850.Phatr48317
EggNOG OGs2D80I@1,2T871@2759,2XF1A@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size438
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50420.12277.1prot_H-elongata_contig50420.12277.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50420 172..1245 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.7955499-UTR-H-elongata_contig50420:147..1711622930828.7955499-UTR-H-elongata_contig50420:147..171Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50420 148..171 +
1691679588.1618154-UTR-H-elongata_contig50420:147..1711691679588.1618154-UTR-H-elongata_contig50420:147..171Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50420 148..171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.8147573-CDS-H-elongata_contig50420:171..3031622930828.8147573-CDS-H-elongata_contig50420:171..303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50420 172..303 +
1691679588.1803799-CDS-H-elongata_contig50420:171..3031691679588.1803799-CDS-H-elongata_contig50420:171..303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50420 172..303 +
1622930828.8340597-CDS-H-elongata_contig50420:672..7861622930828.8340597-CDS-H-elongata_contig50420:672..786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50420 673..786 +
1691679588.1891942-CDS-H-elongata_contig50420:672..7861691679588.1891942-CDS-H-elongata_contig50420:672..786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50420 673..786 +
1622930828.8582182-CDS-H-elongata_contig50420:1077..12451622930828.8582182-CDS-H-elongata_contig50420:1077..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50420 1078..1245 +
1691679588.197601-CDS-H-elongata_contig50420:1077..12451691679588.197601-CDS-H-elongata_contig50420:1077..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50420 1078..1245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50420.12277.1

>prot_H-elongata_contig50420.12277.1 ID=prot_H-elongata_contig50420.12277.1|Name=mRNA_H-elongata_contig50420.12277.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
MTPEDKRSSLRASGVKPPRKRVLLESTDVDIYLQDLMLPLMDEAVRRDVL
LARAWRAGDFAMAGELCADKSERHIVAEQLQMAVKDDDQELAGILMERLE
ILDSCRMDTTQDVGSYQKDLDADEWYQRDRRRSQGSG*
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mRNA from alignment at H-elongata_contig50420:148..1245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50420.12277.1 ID=mRNA_H-elongata_contig50420.12277.1|Name=mRNA_H-elongata_contig50420.12277.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1098bp|location=Sequence derived from alignment at H-elongata_contig50420:148..1245+ (Himanthalia elongata Himel1 dioecious)
AGGTCCCGGGGAGCGCTGTTTCGGATGACCCCAGAGGATAAGCGGAGCAG TCTCAGAGCGAGCGGAGTCAAGCCACCAAGAAAACGAGTGCTTTTAGAAT CGACAGACGTGGACATATACCTCCAAGATCTCATGCTCCCTCTGATGGAC GAGGCGGTATGAAGATAATTAAAACACGCACTTGGAGAGAGTAATACACT TTTGTTGTTGTTATTGTTGTTACAAATTGTAGATTTGAGGTGTAAAACGA GCCAATCAAAATCTTCGATGGGTTCCGGCGCTTTGATAACATTATTTGGT TCGGCATGTGTGATTAAATTTATGAGCTCCGGCGTCCTTTCCTTCCCTGC AGCAAGTTTTGTTCGGTGGTCGGCTTCGTTCGTCACGCAACAACCCACCA GGAAAACTAAGAGATCGGGTTACTCCCGAGGAAACGTGGGAGAGCTATCC ACATACAACTGAAGTAAAGGATTATAATTTTACGGCTTTGACACACGCAC ACTCGCCTTGTCCAATACGTCACAGGTTCGCCGGGACGTACTCCTGGCGA GGGCGTGGCGGGCGGGAGACTTCGCTATGGCCGGCGAGCTGTGCGCTGAC AAGAGCGAGCGACACATCGTCGCGGAGCAGCTGCAGATGGTGCGCGCACA AACGCTCTCGCTCGTGCTTGCGCGTTCATGCATCGCAGCATTGCTGTAGA TCGACCGCCTGGTCGGGCCATGTTTTGCGTTGCGGTATCTCGATCTCGTG CGAAGAGATTCCCGGTTACGGGATTTTGAAGATAGGCTAGCCAATCTCGC CACAACCGTTGCCCATTTTTATTACTGTTTTCGCCGCCGTGGCGTGGCTT GTGGCTCTTTAGAGCGCAAAATTATTTTCCGTGCGTCCACTCGCGTGTCG CCCACGCTTTTTGCCTACCGGCTTTGCCAGGCCGTCAAGGATGACGACCA GGAGTTAGCCGGCATTCTGATGGAACGGCTCGAGATTTTGGACAGCTGCA GGATGGACACCACTCAGGACGTGGGGTCGTACCAGAAGGACTTGGATGCC GACGAGTGGTACCAGCGTGATCGGCGGAGGTCACAGGGGTCAGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig50420:148..1245+

>mRNA_H-elongata_contig50420.12277.1 ID=mRNA_H-elongata_contig50420.12277.1|Name=mRNA_H-elongata_contig50420.12277.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig50420:148..1245+ (Himanthalia elongata Himel1 dioecious)
ATGACCCCAGAGGATAAGCGGAGCAGTCTCAGAGCGAGCGGAGTCAAGCC
ACCAAGAAAACGAGTGCTTTTAGAATCGACAGACGTGGACATATACCTCC
AAGATCTCATGCTCCCTCTGATGGACGAGGCGATGACCCCAGAGGATAAG
CGGAGCAGTCTCAGAGCGAGCGGAGTCAAGCCACCAAGAAAACGAGTGCT
TTTAGAATCGACAGACGTGGACATATACCTCCAAGATCTCATGCTCCCTC
TGATGGACGAGGCGGTTCGCCGGGACGTACTCCTGGCGAGGGCGTGGCGG
GCGGGAGACTTCGCTATGGCCGGCGAGCTGTGCGCTGACAAGAGCGAGCG
ACACATCGTCGCGGAGCAGCTGCAGATGGTTCGCCGGGACGTACTCCTGG
CGAGGGCGTGGCGGGCGGGAGACTTCGCTATGGCCGGCGAGCTGTGCGCT
GACAAGAGCGAGCGACACATCGTCGCGGAGCAGCTGCAGATGGCCGTCAA
GGATGACGACCAGGAGTTAGCCGGCATTCTGATGGAACGGCTCGAGATTT
TGGACAGCTGCAGGATGGACACCACTCAGGACGTGGGGTCGTACCAGAAG
GACTTGGATGCCGACGAGTGGTACCAGCGTGATCGGCGGAGGTCACAGGG
GTCAGGGTGAGCCGTCAAGGATGACGACCAGGAGTTAGCCGGCATTCTGA
TGGAACGGCTCGAGATTTTGGACAGCTGCAGGATGGACACCACTCAGGAC
GTGGGGTCGTACCAGAAGGACTTGGATGCCGACGAGTGGTACCAGCGTGA
TCGGCGGAGGTCACAGGGGTCAGGGTGA
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