mRNA_H-elongata_contig50359.12270.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50359.12270.1
Unique NamemRNA_H-elongata_contig50359.12270.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: D7FL32_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL32_ECTSI)

HSP 1 Score: 315 bits (808), Expect = 1.160e-103
Identity = 157/217 (72.35%), Postives = 179/217 (82.49%), Query Frame = 1
Query:    1 CAGEGARVASESESNVPEGIAVD-EGCRLAGFLVVTTTQGNFHFAPGHRLHRRSNTLSLFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLINTGIDSLFVSGRKYRWR 648
            CAGE     S + +N  E   V+ EGCRLAG L V+ T+GNFHFAPGHRLHR +N LS  +RIQVALESFNTTHTI+TLT GDQPP  HASPKH  +STVL+GHQKTVQDTHAMHQYFLQ+VPTVYR  NG TVHSNQYS TEHLK+V +G +RGLPGVYF+YEVSPVQALVEEKR+GFL+FLTGACGVVGG+YT+L L+NTGID L   G+ +R R
Sbjct:  240 CAGE---ALSANSANTMESPPVENEGCRLAGHLEVSRTEGNFHFAPGHRLHRHANELSFVDRIQVALESFNTTHTINTLTFGDQPPPGHASPKHAVASTVLEGHQKTVQDTHAMHQYFLQLVPTVYRLDNGETVHSNQYSATEHLKHVHDGTSRGLPGVYFYYEVSPVQALVEEKRKGFLAFLTGACGVVGGVYTILGLVNTGIDGLLGMGKAHRSR 453          
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: A0A482SKL0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SKL0_9ARCH)

HSP 1 Score: 167 bits (422), Expect = 1.410e-46
Identity = 83/197 (42.13%), Postives = 122/197 (61.93%), Query Frame = 1
Query:   40 SNVPEGIAVDEGCRLAGFLVVTTTQGNFHFAPGHRLHRRSNTLSLF---ERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLINTGIDSLF 621
            S + E  A D GC++ G L ++ T G+FH AP  ++H +     +F   + I    + FN TH+++ L+ GD  P           ++ L G  + V+DTH M+QYF++VVPT Y+ +N   V SNQYSVTEH+  +  G  RGLPGVYF+YEVSP+QA +EEK+R ++ FLT  C +VGG YT++ L++  + S F
Sbjct:  186 STLREQYAEDGGCQVYGRLHLSKTSGHFHIAPTKKVHEKQANGGMFNILDLISFTFDQFNVTHSVNALSFGDHFPG---------INSPLDGQHRLVKDTHGMYQYFIKVVPTRYKPLNKPEVQSNQYSVTEHMSTLAPGSGRGLPGVYFYYEVSPIQAFIEEKKRSWMHFLTSVCAIVGGAYTVMGLLDILLSSCF 373          
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: A0A7S2B099_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B099_9STRA)

HSP 1 Score: 162 bits (411), Expect = 3.390e-46
Identity = 78/186 (41.94%), Postives = 118/186 (63.44%), Query Frame = 1
Query:   67 DEGCRLAGFLVVTTTQGNFHFAPGHRLHRRSNT--LSLFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLINTGIDSL 618
            DEGC L G + +TT  GNFHFAPG ++   S     ++ E +    +SFN +H I +L+ G+  P           +  L    + + D H M+QY++++VPTVY++++G  V SNQYSVTEHL++V  G  RGLPGV+FFYEVSPV A+ EE +R F+ F+T  C ++GG++T++  ++T I  +
Sbjct:   77 DEGCNLFGDMDLTTVNGNFHFAPGKKMGEASKLGHFTVSELVSFTFQSFNISHEIKSLSFGNTFPG---------ITNPLDNVVRKISDGHGMYQYYIKIVPTVYKYIDGREVVSNQYSVTEHLRHVNPGTGRGLPGVWFFYEVSPVHAVFEETKRSFMEFITSVCAILGGVFTVMGFVDTIIGEV 253          
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: A0A7S2K8A8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K8A8_9STRA)

HSP 1 Score: 154 bits (388), Expect = 4.540e-43
Identity = 76/180 (42.22%), Postives = 115/180 (63.89%), Query Frame = 1
Query:   67 DEGCRLAGFLVVTTTQGNFHFAPGHRLHR--RSNTLSLFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLIN 600
            DEGCR+ G + ++T  GNFHFAP H L      + L++F+ ++   E F+ THTI  L  G++       P  V     L G  + ++D H M+QY++QVVPT+Y++++G  V + Q+SVTEHL++V  G  RGLPGV+FFYEVS +    EE+R+G++ F T  C VVGG++T +  ++
Sbjct:   47 DEGCRIYGRISLSTGGGNFHFAPSHELESMGHESQLTVFDYMRFTFEDFDVTHTIDYLHFGEKGKF---FPNQVHQ---LDGETRKIEDGHGMYQYYIQVVPTLYKYLDGSRVETFQFSVTEHLRHVAPGQGRGLPGVFFFYEVSALHVEFEERRKGWIRFFTSVCAVVGGVFTFVGAVD 220          
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: A0A6V2FLH9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2FLH9_9STRA)

HSP 1 Score: 157 bits (398), Expect = 9.500e-43
Identity = 77/186 (41.40%), Postives = 116/186 (62.37%), Query Frame = 1
Query:   70 EGCRLAGFLVVTTTQGNFHFAPGHRLHR----RSNTLSLFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLINTGIDS 615
            EGC + G + ++T  GN H  PG  L +    + N +S+ + I  A ESFN +HT++ +  G + P       HV     L G ++ ++D + M+QY++QVVPT+YRF+NG  + +NQYSVTEHL++V     RGLPGV+FFYEVS +   +EE R+G++ F T  C VVGG++T + + +  I S
Sbjct:  220 EGCNIHGIVALSTGGGNLHVTPGRGLEQMGTQKENMISISDFIMEAFESFNVSHTVNKIRFGKEIPG------HVHQ---LDGREQVIEDAYGMYQYYIQVVPTLYRFLNGTEIQTNQYSVTEHLRHVPPASRRGLPGVFFFYEVSALHVEIEEYRKGYIHFFTSVCAVVGGVFTFMGMADRMIYS 396          
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: A0A7S3H281_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H281_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.590e-42
Identity = 83/205 (40.49%), Postives = 121/205 (59.02%), Query Frame = 1
Query:   40 SNVPEGIAVDEGCRLAGFLVVTTTQGNFHFAPGHRLHRRSNTLS-----------LFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFT-VHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLINTGIDSL 618
            +N+ E  A D GC+L G L +    G+FH AP  +LH+ +   S           L + I    + FN +HTI+TL+ GD  P            + L G  + VQDTH M+QY+++VVPT Y+ +   T + SNQY+VTEH+ ++  G  RGLPGVYF YEVSP+QAL EEKR G L F+T  C +VGG ++++ L++  + ++
Sbjct:  211 ANMNEQFAEDGGCQLYGSLDLNRGSGHFHIAPHKKLHQPAGDASGRPGQNAGLFNLMDLISFTFDQFNVSHTINTLSFGDNFPG---------IKSPLDGETRGVQDTHGMYQYYIKVVPTRYKALYSTTEIQSNQYAVTEHMSHLAPGSGRGLPGVYFHYEVSPIQALFEEKRGGMLGFITSCCAIVGGAFSVMGLVDVFLGAV 406          
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: A0A1Z5JLU5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLU5_FISSO)

HSP 1 Score: 156 bits (394), Expect = 3.130e-42
Identity = 80/193 (41.45%), Postives = 121/193 (62.69%), Query Frame = 1
Query:   70 EGCRLAGFLVVTTTQGNFHFAPGHRLHR---RSNTLSLFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQA-LVEEKRRGFLSFLTGACGVVGGMYTLLRLINTGIDSLFVSGRK 636
            EGC + G + + +  GN H APG  +     R  ++SLF+ + +    +N THTIH L  G         P+H  +   L+G ++ V+D+H M+QY+LQ++PT Y+F NG T+ +NQYSVTEHL++V  G  RGLPGV+FFYEVSP+   + E  R+G+++F+T  C VVGG+ T + L++      ++ GRK
Sbjct:  213 EGCNVHGKVALDSGGGNLHLAPGEDMTNGLTRPASVSLFDLLLLKFHEWNVTHTIHKLRFG---------PEHPDAIYQLEGQRRVVKDSHGMYQYYLQIIPTQYKFQNGTTIQTNQYSVTEHLRHVPPGSNRGLPGVFFFYEVSPLHVEITEGYRKGWIAFVTSVCAVVGGVVTTMGLLDQ-----YLFGRK 391          
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: A0A7S1FY63_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FY63_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.100e-41
Identity = 77/195 (39.49%), Postives = 121/195 (62.05%), Query Frame = 1
Query:   28 SESESNVPEGIAVDEGCRLAGFLVVTTTQGNFHFAPGHRLHR----RSNTLSLFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLIN 600
            S+ ++ +     VDEGCR+ G + +++  GN H APG  +        + +S+ + + +A E +N THTI  L  G + P + ++         L G  +TV++ H M+QY+LQ+VPT Y  ++G T+ +NQ SVTEH++ V+ G  RG+PGV+FFYEVSP   + EE RRG++ F T  C +VGG+YT+L +I+
Sbjct:  206 SQCKNTIKAKDEVDEGCRMTGNVQLSSAGGNLHIAPGRDVSDIGSGGDSFISITDLLGLAFEKYNVTHTIQKLHFGPRLPEKMSN----VEQQQLDGQVRTVKNVHGMYQYYLQIVPTRYVKLDGTTITTNQMSVTEHMRIVKPGSGRGMPGVFFFYEVSPFHVIFEENRRGWIRFFTSVCAIVGGVYTVLGMID 396          
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: B8C292_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C292_THAPS)

HSP 1 Score: 153 bits (387), Expect = 3.040e-41
Identity = 82/204 (40.20%), Postives = 117/204 (57.35%), Query Frame = 1
Query:   70 EGCRLAGFLVVTTTQGNFHFAPGHRLHRRS-------------NTLSLFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASS----TVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLINTGIDSLFVSG 630
            EGC + G++ ++T  GN HFAP  +  +               N  S+ E    A E FN THT++ L+ G   P      KHV +S    + L G  +TV D + M Q++LQ+VPTVYRF+NG T+ + QYSVTEH+++V  G  RG+PGV+FFYEVS +    EE RRG+  F TG C  VGG +T++ +++  +  L   G
Sbjct:  193 EGCNIHGYVALSTGGGNLHFAPDRQWEKEGDKQNGLMIMGGFINLDSIVEMFNDAYEQFNVTHTVNKLSFGPYMP------KHVKNSLNLTSQLDGATRTVTDGYGMFQFYLQIVPTVYRFLNGTTIETFQYSVTEHVRHVDPGSNRGMPGVFFFYEVSALHVEFEEYRRGWTHFFTGVCAAVGGAFTVMGMLDRLVFDLKSGG 390          
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: A0A7S1BW07_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BW07_9STRA)

HSP 1 Score: 153 bits (386), Expect = 6.200e-41
Identity = 74/183 (40.44%), Postives = 111/183 (60.66%), Query Frame = 1
Query:   64 VDEGCRLAGFLVVTTTQGNFHFAPGHRLHR----RSNTLSLFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLIN 600
            V EGCR+ G + +++  GN H APG          S T S+ + + +A E +N THTI+ L  G + P E            L G  + ++D H M+QY++Q++PT +  ++G  + +NQ SVTEH++ V+ G  RG+PGV+FFYEVSP   + EEKRRG+  F T  C +VGG+YT+L +I+
Sbjct:  220 VGEGCRIEGNVQLSSAGGNLHIAPGRDATNIGSGSSRTFSISDLLGLAFEKYNVTHTINKLHFGPRLPNEMGD----IVQRQLDGESRAIKDMHGMYQYYIQIIPTRFVLLSGTAIETNQMSVTEHMRVVKPGSGRGMPGVFFFYEVSPFHVIFEEKRRGYFRFFTSICAIVGGVYTVLGMID 398          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL32_ECTSI1.160e-10372.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A482SKL0_9ARCH1.410e-4642.13Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2B099_9STRA3.390e-4641.94Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2K8A8_9STRA4.540e-4342.22Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6V2FLH9_9STRA9.500e-4341.40Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3H281_9STRA1.590e-4240.49Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A1Z5JLU5_FISSO3.130e-4241.45Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S1FY63_9STRA1.100e-4139.49Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B8C292_THAPS3.040e-4140.20Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1BW07_9STRA6.200e-4140.44Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50359contigH-elongata_contig50359:1788..4099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score318.2
Seed ortholog evalue3.1e-84
Seed eggNOG ortholog2880.D7FL32
Preferred nameERGIC3
KEGG rclassRC00002,RC00078
KEGG koko:K00889,ko:K20365,ko:K20367
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016192,GO:0030134,GO:0030135,GO:0030173,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0033036,GO:0034613,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098827
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG0445@1,KOG2667@2759
EC2.7.1.68
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEndoplasmic reticulum vesicle transporter, C-terminal
Ec32 orthologEc-05_006830.1
Exons5
Model size651
Cds size651
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50359.12270.1prot_H-elongata_contig50359.12270.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50359 1788..4099 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.1756003-CDS-H-elongata_contig50359:1787..19901622930828.1756003-CDS-H-elongata_contig50359:1787..1990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50359 1788..1990 -
1691679587.957929-CDS-H-elongata_contig50359:1787..19901691679587.957929-CDS-H-elongata_contig50359:1787..1990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50359 1788..1990 -
1622930828.1981604-CDS-H-elongata_contig50359:2510..26131622930828.1981604-CDS-H-elongata_contig50359:2510..2613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50359 2511..2613 -
1691679587.9687846-CDS-H-elongata_contig50359:2510..26131691679587.9687846-CDS-H-elongata_contig50359:2510..2613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50359 2511..2613 -
1622930828.2123013-CDS-H-elongata_contig50359:2961..31171622930828.2123013-CDS-H-elongata_contig50359:2961..3117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50359 2962..3117 -
1691679587.9771261-CDS-H-elongata_contig50359:2961..31171691679587.9771261-CDS-H-elongata_contig50359:2961..3117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50359 2962..3117 -
1622930828.224144-CDS-H-elongata_contig50359:3450..35401622930828.224144-CDS-H-elongata_contig50359:3450..3540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50359 3451..3540 -
1691679587.9857564-CDS-H-elongata_contig50359:3450..35401691679587.9857564-CDS-H-elongata_contig50359:3450..3540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50359 3451..3540 -
1622930828.2391715-CDS-H-elongata_contig50359:4000..40991622930828.2391715-CDS-H-elongata_contig50359:4000..4099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50359 4001..4099 -
1691679587.9953494-CDS-H-elongata_contig50359:4000..40991691679587.9953494-CDS-H-elongata_contig50359:4000..4099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50359 4001..4099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50359.12270.1

>prot_H-elongata_contig50359.12270.1 ID=prot_H-elongata_contig50359.12270.1|Name=mRNA_H-elongata_contig50359.12270.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp
CAGEGARVASESESNVPEGIAVDEGCRLAGFLVVTTTQGNFHFAPGHRLH
RRSNTLSLFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVL
QGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEG
PARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLIN
TGIDSLFVSGRKYRWR*
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mRNA from alignment at H-elongata_contig50359:1788..4099-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50359.12270.1 ID=mRNA_H-elongata_contig50359.12270.1|Name=mRNA_H-elongata_contig50359.12270.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2312bp|location=Sequence derived from alignment at H-elongata_contig50359:1788..4099- (Himanthalia elongata Himel1 dioecious)
TGTGCGGGGGAGGGAGCGCGAGTTGCAAGCGAGTCTGAAAGCAATGTGCC AGAAGGTATAGCCGTGGACGAAGGGTGCCGGTTGGCGGGGTTTCTAGTGG TGAGTGCATCATCGCCCCAACTCCAGTGTCGTCGTTGGCTCTAAAGCACA GGCCACGGTTGGCTAGTTTCCCGTCAAATTCTCTTGGAGATCTCGGGCAA GATCGTGTTGGCTCTCTGAACACACCATGTCGTCCCGAAACCTCGCGCTT CCTCATGACTTTAGCCTTTCAAGAGTTGCTTTAGCATCTATTGTAGCTTG GGGGCTTGCAGAGCGTTCGTGTGAGGATGTGCCCGCGCTGTTGTTGCAAA CAGTCACAGTGTCCGTACTATAAACTCTTCGTCGGTATAGAACTGGCATT GAATCGGCTGCTGTCTATTGCACTCTCTTTCATAGTTTGTGCACGCGTTA CCACGTGTCGTTCCCACCCCTTATATCCGGAATCTCGAAGGAAGGAATCG GTTGATTCCATGCTGGAACGTTCCCTTGCGTGGTGTTTCGCCTAACACGC TCTATCCAGGTGACGACGACACAAGGGAACTTCCACTTTGCCCCCGGACA CCGTCTTCATCGCCGCTCCAATACTCTGTCCCTATTTGAGAGAATACAGG TTTGATGCCGTGCATCAACGAAAATGGTGTTCCTGCCCCCTTTACTTTGC CTGAGGCGCTTGTCAGGCTTCCCCGAGAGCTTGCGTTCTAAATATTTGTT GTTCATTTGCCGTTGGAATCGACCGTTTATTGTGTCGATGGATGCTTCAA CAACAGGCTGTGTGTAAGTGTGTGTTGTGCCGTGCTACACTTGGAGATTC TCAGTCTTTCAGGGATAACGAATGGCGAAGAGCACGCGGAGCACTAGTAC CAGCATGAAACAACTGAGAGGCTGGAACCGTGTTTGCCTTGCCTCCGGGA TACTGGTTACCCGCTCGATGTCCTCCCGACAGGTAGCGCTGGAGTCGTTC AACACTACCCACACGATACATACACTCACCCTGGGAGACCAGCCCCCTGC GGAACACGCCTCCCCCAAGCATGTTGCATCGTCGACGGTGCTACAGGGCC ACCAAAAGACGGTTCAAGACACCCACGCCATGCATCAGGTGAGAAGTCAT GGCGGCTGGTTGTCTTTACGGGTGCGTAAAGGCGAGATTGCCAAATACTG TGCACGAACGAGCCCATGGTATTTGGAAAGGTGTTCATATTCTCGTTCGT CGCCCAGACGGACGACGGCGAAATGCCCGAACGCTCGTCCCGAAAGGTGC CTTGCGCTTCCCTGCGCATGGGCAAAACCCAACCTACGGCAAGGGATCCG ATTCTTAAATGTCCGTCATAATGTTGAGAAACGATCGGCAAAGGAAGCGA CTGTCCGTACAAATCCATCGCTTCCGTTTTGGTCATTTTTTCTGCGACGG TACCTCTACCGACCGATCCGCGCACGACGTCCACAGTATTTCCTCCAGGT GGTGCCGACAGTGTACCGATTTGTGAACGGTTTCACGGTGCACAGCAACC AGTACTCGGTCACCGAGCACCTCAAGAACGTGCAAGAAGGTGAGAACTTC TTTCGACGATATTGGTCTTTGGCTGGAGTCATGTTATGACTGTCCATCGC AGGCGCTTACTCTGTGCAGGGGGGGATAAAGTGATCGCCAGCAAAAGAAA TCCAGTGTATTGATGGTATCGGCGATCAGTCGATTCGTTGGTCATCCCAC ATTCTGGCCCTGTCTTACTTGCAAGATGATCCCAGAAAACCCCAGCGCGA GAAAAACCAACGGAGGCGTCACCCGCCGAAAAGCTGCCCGTTTCCTAAAA GCTATATACAAAAGAAGACCATCCACTCGAACCCCGCGGCTCTATATTCC TGCCTGGGTGCATTGCACTGCTATCCTCTGATGTCGCGATGCCGCAGGCT ATTAACACGCAGCGAAGAAACTTGCTAACTCGAGAGCAATAACACTGCGG TCGATGGCAAATGCATTATTAATTCTTCTTGACTGTCGCCCAGCGGTAAA TCTTCAACCCACTCACACCCATCCCCCCTTACAACCCCTTCGCGCACCAC ACCTCCCAGGACCGGCGCGAGGTCTACCGGGAGTTTACTTCTTCTATGAG GTCTCGCCGGTACAAGCGCTGGTAGAGGAGAAAAGGCGGGGATTCTTGTC CTTTCTCACGGGGGCCTGTGGCGTAGTGGGTGGCATGTATACATTACTTA GATTGATCAACACCGGAATCGATAGCTTATTCGTAAGCGGGCGCAAGTAT CGGTGGAGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig50359:1788..4099-

>mRNA_H-elongata_contig50359.12270.1 ID=mRNA_H-elongata_contig50359.12270.1|Name=mRNA_H-elongata_contig50359.12270.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1302bp|location=Sequence derived from alignment at H-elongata_contig50359:1788..4099- (Himanthalia elongata Himel1 dioecious)
TGTGCGGGGGAGGGAGCGCGAGTTGCAAGCGAGTCTGAAAGCAATGTGCC
AGAAGGTATAGCCGTGGACGAAGGGTGCCGGTTGGCGGGGTTTCTAGTGT
GTGCGGGGGAGGGAGCGCGAGTTGCAAGCGAGTCTGAAAGCAATGTGCCA
GAAGGTATAGCCGTGGACGAAGGGTGCCGGTTGGCGGGGTTTCTAGTGGT
GACGACGACACAAGGGAACTTCCACTTTGCCCCCGGACACCGTCTTCATC
GCCGCTCCAATACTCTGTCCCTATTTGAGAGAATACAGGTGACGACGACA
CAAGGGAACTTCCACTTTGCCCCCGGACACCGTCTTCATCGCCGCTCCAA
TACTCTGTCCCTATTTGAGAGAATACAGGTAGCGCTGGAGTCGTTCAACA
CTACCCACACGATACATACACTCACCCTGGGAGACCAGCCCCCTGCGGAA
CACGCCTCCCCCAAGCATGTTGCATCGTCGACGGTGCTACAGGGCCACCA
AAAGACGGTTCAAGACACCCACGCCATGCATCAGGTAGCGCTGGAGTCGT
TCAACACTACCCACACGATACATACACTCACCCTGGGAGACCAGCCCCCT
GCGGAACACGCCTCCCCCAAGCATGTTGCATCGTCGACGGTGCTACAGGG
CCACCAAAAGACGGTTCAAGACACCCACGCCATGCATCAGTATTTCCTCC
AGGTGGTGCCGACAGTGTACCGATTTGTGAACGGTTTCACGGTGCACAGC
AACCAGTACTCGGTCACCGAGCACCTCAAGAACGTGCAAGAAGTATTTCC
TCCAGGTGGTGCCGACAGTGTACCGATTTGTGAACGGTTTCACGGTGCAC
AGCAACCAGTACTCGGTCACCGAGCACCTCAAGAACGTGCAAGAAGGACC
GGCGCGAGGTCTACCGGGAGTTTACTTCTTCTATGAGGTCTCGCCGGTAC
AAGCGCTGGTAGAGGAGAAAAGGCGGGGATTCTTGTCCTTTCTCACGGGG
GCCTGTGGCGTAGTGGGTGGCATGTATACATTACTTAGATTGATCAACAC
CGGAATCGATAGCTTATTCGTAAGCGGGCGCAAGTATCGGTGGAGATAGG
ACCGGCGCGAGGTCTACCGGGAGTTTACTTCTTCTATGAGGTCTCGCCGG
TACAAGCGCTGGTAGAGGAGAAAAGGCGGGGATTCTTGTCCTTTCTCACG
GGGGCCTGTGGCGTAGTGGGTGGCATGTATACATTACTTAGATTGATCAA
CACCGGAATCGATAGCTTATTCGTAAGCGGGCGCAAGTATCGGTGGAGAT
AG
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