mRNA_H-elongata_contig50359.12270.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: D7FL32_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL32_ECTSI) HSP 1 Score: 315 bits (808), Expect = 1.160e-103 Identity = 157/217 (72.35%), Postives = 179/217 (82.49%), Query Frame = 1
Query: 1 CAGEGARVASESESNVPEGIAVD-EGCRLAGFLVVTTTQGNFHFAPGHRLHRRSNTLSLFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLINTGIDSLFVSGRKYRWR 648
CAGE S + +N E V+ EGCRLAG L V+ T+GNFHFAPGHRLHR +N LS +RIQVALESFNTTHTI+TLT GDQPP HASPKH +STVL+GHQKTVQDTHAMHQYFLQ+VPTVYR NG TVHSNQYS TEHLK+V +G +RGLPGVYF+YEVSPVQALVEEKR+GFL+FLTGACGVVGG+YT+L L+NTGID L G+ +R R
Sbjct: 240 CAGE---ALSANSANTMESPPVENEGCRLAGHLEVSRTEGNFHFAPGHRLHRHANELSFVDRIQVALESFNTTHTINTLTFGDQPPPGHASPKHAVASTVLEGHQKTVQDTHAMHQYFLQLVPTVYRLDNGETVHSNQYSATEHLKHVHDGTSRGLPGVYFYYEVSPVQALVEEKRKGFLAFLTGACGVVGGVYTILGLVNTGIDGLLGMGKAHRSR 453
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: A0A482SKL0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SKL0_9ARCH) HSP 1 Score: 167 bits (422), Expect = 1.410e-46 Identity = 83/197 (42.13%), Postives = 122/197 (61.93%), Query Frame = 1
Query: 40 SNVPEGIAVDEGCRLAGFLVVTTTQGNFHFAPGHRLHRRSNTLSLF---ERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLINTGIDSLF 621
S + E A D GC++ G L ++ T G+FH AP ++H + +F + I + FN TH+++ L+ GD P ++ L G + V+DTH M+QYF++VVPT Y+ +N V SNQYSVTEH+ + G RGLPGVYF+YEVSP+QA +EEK+R ++ FLT C +VGG YT++ L++ + S F
Sbjct: 186 STLREQYAEDGGCQVYGRLHLSKTSGHFHIAPTKKVHEKQANGGMFNILDLISFTFDQFNVTHSVNALSFGDHFPG---------INSPLDGQHRLVKDTHGMYQYFIKVVPTRYKPLNKPEVQSNQYSVTEHMSTLAPGSGRGLPGVYFYYEVSPIQAFIEEKKRSWMHFLTSVCAIVGGAYTVMGLLDILLSSCF 373
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: A0A7S2B099_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B099_9STRA) HSP 1 Score: 162 bits (411), Expect = 3.390e-46 Identity = 78/186 (41.94%), Postives = 118/186 (63.44%), Query Frame = 1
Query: 67 DEGCRLAGFLVVTTTQGNFHFAPGHRLHRRSNT--LSLFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLINTGIDSL 618
DEGC L G + +TT GNFHFAPG ++ S ++ E + +SFN +H I +L+ G+ P + L + + D H M+QY++++VPTVY++++G V SNQYSVTEHL++V G RGLPGV+FFYEVSPV A+ EE +R F+ F+T C ++GG++T++ ++T I +
Sbjct: 77 DEGCNLFGDMDLTTVNGNFHFAPGKKMGEASKLGHFTVSELVSFTFQSFNISHEIKSLSFGNTFPG---------ITNPLDNVVRKISDGHGMYQYYIKIVPTVYKYIDGREVVSNQYSVTEHLRHVNPGTGRGLPGVWFFYEVSPVHAVFEETKRSFMEFITSVCAILGGVFTVMGFVDTIIGEV 253
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: A0A7S2K8A8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K8A8_9STRA) HSP 1 Score: 154 bits (388), Expect = 4.540e-43 Identity = 76/180 (42.22%), Postives = 115/180 (63.89%), Query Frame = 1
Query: 67 DEGCRLAGFLVVTTTQGNFHFAPGHRLHR--RSNTLSLFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLIN 600
DEGCR+ G + ++T GNFHFAP H L + L++F+ ++ E F+ THTI L G++ P V L G + ++D H M+QY++QVVPT+Y++++G V + Q+SVTEHL++V G RGLPGV+FFYEVS + EE+R+G++ F T C VVGG++T + ++
Sbjct: 47 DEGCRIYGRISLSTGGGNFHFAPSHELESMGHESQLTVFDYMRFTFEDFDVTHTIDYLHFGEKGKF---FPNQVHQ---LDGETRKIEDGHGMYQYYIQVVPTLYKYLDGSRVETFQFSVTEHLRHVAPGQGRGLPGVFFFYEVSALHVEFEERRKGWIRFFTSVCAVVGGVFTFVGAVD 220
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: A0A6V2FLH9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2FLH9_9STRA) HSP 1 Score: 157 bits (398), Expect = 9.500e-43 Identity = 77/186 (41.40%), Postives = 116/186 (62.37%), Query Frame = 1
Query: 70 EGCRLAGFLVVTTTQGNFHFAPGHRLHR----RSNTLSLFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLINTGIDS 615
EGC + G + ++T GN H PG L + + N +S+ + I A ESFN +HT++ + G + P HV L G ++ ++D + M+QY++QVVPT+YRF+NG + +NQYSVTEHL++V RGLPGV+FFYEVS + +EE R+G++ F T C VVGG++T + + + I S
Sbjct: 220 EGCNIHGIVALSTGGGNLHVTPGRGLEQMGTQKENMISISDFIMEAFESFNVSHTVNKIRFGKEIPG------HVHQ---LDGREQVIEDAYGMYQYYIQVVPTLYRFLNGTEIQTNQYSVTEHLRHVPPASRRGLPGVFFFYEVSALHVEIEEYRKGYIHFFTSVCAVVGGVFTFMGMADRMIYS 396
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: A0A7S3H281_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H281_9STRA) HSP 1 Score: 157 bits (397), Expect = 1.590e-42 Identity = 83/205 (40.49%), Postives = 121/205 (59.02%), Query Frame = 1
Query: 40 SNVPEGIAVDEGCRLAGFLVVTTTQGNFHFAPGHRLHRRSNTLS-----------LFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFT-VHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLINTGIDSL 618
+N+ E A D GC+L G L + G+FH AP +LH+ + S L + I + FN +HTI+TL+ GD P + L G + VQDTH M+QY+++VVPT Y+ + T + SNQY+VTEH+ ++ G RGLPGVYF YEVSP+QAL EEKR G L F+T C +VGG ++++ L++ + ++
Sbjct: 211 ANMNEQFAEDGGCQLYGSLDLNRGSGHFHIAPHKKLHQPAGDASGRPGQNAGLFNLMDLISFTFDQFNVSHTINTLSFGDNFPG---------IKSPLDGETRGVQDTHGMYQYYIKVVPTRYKALYSTTEIQSNQYAVTEHMSHLAPGSGRGLPGVYFHYEVSPIQALFEEKRGGMLGFITSCCAIVGGAFSVMGLVDVFLGAV 406
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: A0A1Z5JLU5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLU5_FISSO) HSP 1 Score: 156 bits (394), Expect = 3.130e-42 Identity = 80/193 (41.45%), Postives = 121/193 (62.69%), Query Frame = 1
Query: 70 EGCRLAGFLVVTTTQGNFHFAPGHRLHR---RSNTLSLFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQA-LVEEKRRGFLSFLTGACGVVGGMYTLLRLINTGIDSLFVSGRK 636
EGC + G + + + GN H APG + R ++SLF+ + + +N THTIH L G P+H + L+G ++ V+D+H M+QY+LQ++PT Y+F NG T+ +NQYSVTEHL++V G RGLPGV+FFYEVSP+ + E R+G+++F+T C VVGG+ T + L++ ++ GRK
Sbjct: 213 EGCNVHGKVALDSGGGNLHLAPGEDMTNGLTRPASVSLFDLLLLKFHEWNVTHTIHKLRFG---------PEHPDAIYQLEGQRRVVKDSHGMYQYYLQIIPTQYKFQNGTTIQTNQYSVTEHLRHVPPGSNRGLPGVFFFYEVSPLHVEITEGYRKGWIAFVTSVCAVVGGVVTTMGLLDQ-----YLFGRK 391
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: A0A7S1FY63_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FY63_9STRA) HSP 1 Score: 155 bits (391), Expect = 1.100e-41 Identity = 77/195 (39.49%), Postives = 121/195 (62.05%), Query Frame = 1
Query: 28 SESESNVPEGIAVDEGCRLAGFLVVTTTQGNFHFAPGHRLHR----RSNTLSLFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLIN 600
S+ ++ + VDEGCR+ G + +++ GN H APG + + +S+ + + +A E +N THTI L G + P + ++ L G +TV++ H M+QY+LQ+VPT Y ++G T+ +NQ SVTEH++ V+ G RG+PGV+FFYEVSP + EE RRG++ F T C +VGG+YT+L +I+
Sbjct: 206 SQCKNTIKAKDEVDEGCRMTGNVQLSSAGGNLHIAPGRDVSDIGSGGDSFISITDLLGLAFEKYNVTHTIQKLHFGPRLPEKMSN----VEQQQLDGQVRTVKNVHGMYQYYLQIVPTRYVKLDGTTITTNQMSVTEHMRIVKPGSGRGMPGVFFFYEVSPFHVIFEENRRGWIRFFTSVCAIVGGVYTVLGMID 396
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: B8C292_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C292_THAPS) HSP 1 Score: 153 bits (387), Expect = 3.040e-41 Identity = 82/204 (40.20%), Postives = 117/204 (57.35%), Query Frame = 1
Query: 70 EGCRLAGFLVVTTTQGNFHFAPGHRLHRRS-------------NTLSLFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASS----TVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLINTGIDSLFVSG 630
EGC + G++ ++T GN HFAP + + N S+ E A E FN THT++ L+ G P KHV +S + L G +TV D + M Q++LQ+VPTVYRF+NG T+ + QYSVTEH+++V G RG+PGV+FFYEVS + EE RRG+ F TG C VGG +T++ +++ + L G
Sbjct: 193 EGCNIHGYVALSTGGGNLHFAPDRQWEKEGDKQNGLMIMGGFINLDSIVEMFNDAYEQFNVTHTVNKLSFGPYMP------KHVKNSLNLTSQLDGATRTVTDGYGMFQFYLQIVPTVYRFLNGTTIETFQYSVTEHVRHVDPGSNRGMPGVFFFYEVSALHVEFEEYRRGWTHFFTGVCAAVGGAFTVMGMLDRLVFDLKSGG 390
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Match: A0A7S1BW07_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BW07_9STRA) HSP 1 Score: 153 bits (386), Expect = 6.200e-41 Identity = 74/183 (40.44%), Postives = 111/183 (60.66%), Query Frame = 1
Query: 64 VDEGCRLAGFLVVTTTQGNFHFAPGHRLHR----RSNTLSLFERIQVALESFNTTHTIHTLTLGDQPPAEHASPKHVASSTVLQGHQKTVQDTHAMHQYFLQVVPTVYRFVNGFTVHSNQYSVTEHLKNVQEGPARGLPGVYFFYEVSPVQALVEEKRRGFLSFLTGACGVVGGMYTLLRLIN 600
V EGCR+ G + +++ GN H APG S T S+ + + +A E +N THTI+ L G + P E L G + ++D H M+QY++Q++PT + ++G + +NQ SVTEH++ V+ G RG+PGV+FFYEVSP + EEKRRG+ F T C +VGG+YT+L +I+
Sbjct: 220 VGEGCRIEGNVQLSSAGGNLHIAPGRDATNIGSGSSRTFSISDLLGLAFEKYNVTHTINKLHFGPRLPNEMGD----IVQRQLDGESRAIKDMHGMYQYYIQIIPTRFVLLSGTAIETNQMSVTEHMRVVKPGSGRGMPGVFFFYEVSPFHVIFEEKRRGYFRFFTSICAIVGGVYTVLGMID 398 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50359.12270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50359.12270.1 >prot_H-elongata_contig50359.12270.1 ID=prot_H-elongata_contig50359.12270.1|Name=mRNA_H-elongata_contig50359.12270.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp CAGEGARVASESESNVPEGIAVDEGCRLAGFLVVTTTQGNFHFAPGHRLHback to top mRNA from alignment at H-elongata_contig50359:1788..4099- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50359.12270.1 ID=mRNA_H-elongata_contig50359.12270.1|Name=mRNA_H-elongata_contig50359.12270.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2312bp|location=Sequence derived from alignment at H-elongata_contig50359:1788..4099- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50359:1788..4099- >mRNA_H-elongata_contig50359.12270.1 ID=mRNA_H-elongata_contig50359.12270.1|Name=mRNA_H-elongata_contig50359.12270.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1302bp|location=Sequence derived from alignment at H-elongata_contig50359:1788..4099- (Himanthalia elongata Himel1 dioecious)back to top |