mRNA_H-elongata_contig50103.12238.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50103.12238.1
Unique NamemRNA_H-elongata_contig50103.12238.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50103.12238.1 vs. uniprot
Match: D7G213_ECTSI (TLC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G213_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 7.750e-8
Identity = 23/31 (74.19%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:   40 FQFWETRRSDFNQMLVHHLATLFLLSYSWLM 132
            FQFW+TRRSDF QMLVHH+AT+ LL++SWL+
Sbjct:  200 FQFWDTRRSDFAQMLVHHVATISLLTFSWLL 230
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BLAST of mRNA_H-elongata_contig50103.12238.1 vs. uniprot
Match: I2CPH2_NANGC (Lag1 longevity assurance 5-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPH2_NANGC)

HSP 1 Score: 50.1 bits (118), Expect = 8.320e-6
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 YLSLSLGFIFMH--AFQFWETRRSDFNQMLVHHLATLFLLSYSWL 129
            Y +  LG I++H  A+QF +TRRSDF +M VHH AT+FL+ +SWL
Sbjct:   77 YYTFQLG-IYLHLSAYQFIDTRRSDFWEMFVHHAATIFLIVFSWL 120
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BLAST of mRNA_H-elongata_contig50103.12238.1 vs. uniprot
Match: A0A835GDQ9_SPOEX (TLC domain-containing protein (Fragment) n=2 Tax=Spodoptera exigua TaxID=7107 RepID=A0A835GDQ9_SPOEX)

HSP 1 Score: 49.7 bits (117), Expect = 1.070e-5
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 YLSLSLGFIFMHAF-QFWETRRSDFNQMLVHHLATLFLLSYSW 126
            Y  +S  F +   F QFW+ RR DF QM VHH+AT+ LLS+SW
Sbjct:   83 YYMISAAFYWSLTFSQFWDVRRKDFWQMFVHHIATILLLSFSW 125
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BLAST of mRNA_H-elongata_contig50103.12238.1 vs. uniprot
Match: A0A2H1VPF7_SPOFR (SFRICE_007394 n=2 Tax=Spodoptera TaxID=7106 RepID=A0A2H1VPF7_SPOFR)

HSP 1 Score: 49.7 bits (117), Expect = 1.100e-5
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 YLSLSLGFIFMHAF-QFWETRRSDFNQMLVHHLATLFLLSYSW 126
            Y  +S  F +   F QFW+ RR DF QM VHH+AT+ LLS+SW
Sbjct:   94 YYMISAAFYWALTFSQFWDVRRKDFWQMFVHHIATILLLSFSW 136
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BLAST of mRNA_H-elongata_contig50103.12238.1 vs. uniprot
Match: A0A835L8A2_SPOEX (TLC domain-containing protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=A0A835L8A2_SPOEX)

HSP 1 Score: 49.7 bits (117), Expect = 1.160e-5
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 YLSLSLGFIFMHAF-QFWETRRSDFNQMLVHHLATLFLLSYSW 126
            Y  +S  F +   F QFW+ RR DF QM VHH+AT+ LLS+SW
Sbjct:   84 YYMISAAFYWSLTFSQFWDVRRKDFWQMFVHHIATILLLSFSW 126
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BLAST of mRNA_H-elongata_contig50103.12238.1 vs. uniprot
Match: A0A8N7X8J5_SPOFR (ceramide synthase 6-like isoform X1 n=8 Tax=Spodoptera TaxID=7106 RepID=A0A8N7X8J5_SPOFR)

HSP 1 Score: 49.7 bits (117), Expect = 1.170e-5
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 YLSLSLGFIFMHAF-QFWETRRSDFNQMLVHHLATLFLLSYSW 126
            Y  +S  F +   F QFW+ RR DF QM VHH+AT+ LLS+SW
Sbjct:  190 YYMISAAFYWALTFSQFWDVRRKDFWQMFVHHIATIMLLSFSW 232
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BLAST of mRNA_H-elongata_contig50103.12238.1 vs. uniprot
Match: A0A821PIZ1_9NEOP (Hypothetical protein n=15 Tax=Pieridae TaxID=7114 RepID=A0A821PIZ1_9NEOP)

HSP 1 Score: 49.3 bits (116), Expect = 1.600e-5
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 YLSLSLGFIFMHAF-QFWETRRSDFNQMLVHHLATLFLLSYSW 126
            Y  +S  F +   F QFW+ RR DF QM VHHLAT+ LLS+SW
Sbjct:  183 YYMISSAFYWSLTFSQFWDVRRKDFWQMFVHHLATIALLSFSW 225
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BLAST of mRNA_H-elongata_contig50103.12238.1 vs. uniprot
Match: A0A2W1BKB4_HELAM (TLC domain-containing protein n=2 Tax=Obtectomera TaxID=104431 RepID=A0A2W1BKB4_HELAM)

HSP 1 Score: 48.9 bits (115), Expect = 2.120e-5
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   43 QFWETRRSDFNQMLVHHLATLFLLSYSW 126
            QFW+ RR DF QM VHH+AT+ LLS+SW
Sbjct:  105 QFWDVRRKDFWQMFVHHIATILLLSFSW 132
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BLAST of mRNA_H-elongata_contig50103.12238.1 vs. uniprot
Match: A0A437BFD0_CHISP (Uncharacterized protein n=1 Tax=Chilo suppressalis TaxID=168631 RepID=A0A437BFD0_CHISP)

HSP 1 Score: 48.9 bits (115), Expect = 2.180e-5
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   43 QFWETRRSDFNQMLVHHLATLFLLSYSW 126
            QFW+ RR DF QM VHH+AT+ LLS+SW
Sbjct:  196 QFWDVRRKDFWQMFVHHIATILLLSFSW 223
[Close]
BLAST of mRNA_H-elongata_contig50103.12238.1 vs. uniprot
Match: A0A8J2MXE2_9NEOP ((African queen) hypothetical protein n=3 Tax=Nymphalidae TaxID=33415 RepID=A0A8J2MXE2_9NEOP)

HSP 1 Score: 48.9 bits (115), Expect = 2.180e-5
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   43 QFWETRRSDFNQMLVHHLATLFLLSYSW 126
            QFW+ RR DF QM VHH+AT+ LLS+SW
Sbjct:  198 QFWDVRRKDFWQMFVHHIATILLLSFSW 225
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50103.12238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G213_ECTSI7.750e-874.19TLC domain-containing protein n=2 Tax=Ectocarpus T... [more]
I2CPH2_NANGC8.320e-655.56Lag1 longevity assurance 5-like protein (Fragment)... [more]
A0A835GDQ9_SPOEX1.070e-553.49TLC domain-containing protein (Fragment) n=2 Tax=S... [more]
A0A2H1VPF7_SPOFR1.100e-553.49SFRICE_007394 n=2 Tax=Spodoptera TaxID=7106 RepID=... [more]
A0A835L8A2_SPOEX1.160e-553.49TLC domain-containing protein n=1 Tax=Spodoptera e... [more]
A0A8N7X8J5_SPOFR1.170e-553.49ceramide synthase 6-like isoform X1 n=8 Tax=Spodop... [more]
A0A821PIZ1_9NEOP1.600e-555.81Hypothetical protein n=15 Tax=Pieridae TaxID=7114 ... [more]
A0A2W1BKB4_HELAM2.120e-567.86TLC domain-containing protein n=2 Tax=Obtectomera ... [more]
A0A437BFD0_CHISP2.180e-567.86Uncharacterized protein n=1 Tax=Chilo suppressalis... [more]
A0A8J2MXE2_9NEOP2.180e-567.86(African queen) hypothetical protein n=3 Tax=Nymph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50103contigH-elongata_contig50103:3966..4103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size108
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930824.78602-UTR-H-elongata_contig50103:3965..39951622930824.78602-UTR-H-elongata_contig50103:3965..3995Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50103 3966..3995 +
1691679586.4446228-UTR-H-elongata_contig50103:3965..39951691679586.4446228-UTR-H-elongata_contig50103:3965..3995Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50103 3966..3995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930824.8089483-CDS-H-elongata_contig50103:3995..41031622930824.8089483-CDS-H-elongata_contig50103:3995..4103Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50103 3996..4103 +
1691679586.4543078-CDS-H-elongata_contig50103:3995..41031691679586.4543078-CDS-H-elongata_contig50103:3995..4103Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50103 3996..4103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50103.12238.1prot_H-elongata_contig50103.12238.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50103 3996..4103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50103.12238.1

>prot_H-elongata_contig50103.12238.1 ID=prot_H-elongata_contig50103.12238.1|Name=mRNA_H-elongata_contig50103.12238.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
MHAFQFWETRRSDFNQMLVHHLATLFLLSYSWLMR*
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mRNA from alignment at H-elongata_contig50103:3966..4103+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50103.12238.1 ID=mRNA_H-elongata_contig50103.12238.1|Name=mRNA_H-elongata_contig50103.12238.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig50103:3966..4103+ (Himanthalia elongata Himel1 dioecious)
TATCTCTCTCTCTCTCTCGGCTTCATTTTCATGCATGCCTTCCAGTTCTG
GGAAACCCGCCGATCGGACTTCAACCAGATGCTCGTGCACCACTTGGCCA
CCCTTTTCCTGCTGAGCTACTCGTGGCTGATGAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig50103:3966..4103+

>mRNA_H-elongata_contig50103.12238.1 ID=mRNA_H-elongata_contig50103.12238.1|Name=mRNA_H-elongata_contig50103.12238.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at H-elongata_contig50103:3966..4103+ (Himanthalia elongata Himel1 dioecious)
ATGCATGCCTTCCAGTTCTGGGAAACCCGCCGATCGGACTTCAACCAGAT
GCTCGTGCACCACTTGGCCACCCTTTTCCTGCTGAGCTACTCGTGGCTGA
TGAGGTAAATGCATGCCTTCCAGTTCTGGGAAACCCGCCGATCGGACTTC
AACCAGATGCTCGTGCACCACTTGGCCACCCTTTTCCTGCTGAGCTACTC
GTGGCTGATGAGGTAA
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