mRNA_H-elongata_contig49944.12216.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49944.12216.1
Unique NamemRNA_H-elongata_contig49944.12216.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49944.12216.1 vs. uniprot
Match: A0A6H5K407_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K407_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 2.480e-5
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 1 
Query:   88 DRLWRWAGLFTAARMGIIPIIVCVTVA 168
            DRLWRW G  TAA+MG+IPIIVC TVA
Sbjct:  401 DRLWRWTGFLTAAKMGVIPIIVCATVA 427
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BLAST of mRNA_H-elongata_contig49944.12216.1 vs. uniprot
Match: D7FYP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYP0_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 2.480e-5
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 1 
Query:   88 DRLWRWAGLFTAARMGIIPIIVCVTVA 168
            DRLWRW G  TAA+MG+IPIIVC TVA
Sbjct:  402 DRLWRWTGFLTAAKMGVIPIIVCATVA 428
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49944.12216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K407_9PHAE2.480e-577.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYP0_ECTSI2.480e-577.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49944contigH-elongata_contig49944:2194..4140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_000180.1
Exons2
Model size168
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930822.5905728-CDS-H-elongata_contig49944:2193..23281622930822.5905728-CDS-H-elongata_contig49944:2193..2328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49944 2194..2328 +
1691679585.4537582-CDS-H-elongata_contig49944:2193..23281691679585.4537582-CDS-H-elongata_contig49944:2193..2328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49944 2194..2328 +
1622930822.6079462-CDS-H-elongata_contig49944:4107..41401622930822.6079462-CDS-H-elongata_contig49944:4107..4140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49944 4108..4140 +
1691679585.4616272-CDS-H-elongata_contig49944:4107..41401691679585.4616272-CDS-H-elongata_contig49944:4107..4140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49944 4108..4140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49944.12216.1prot_H-elongata_contig49944.12216.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49944 2194..4140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49944.12216.1

>prot_H-elongata_contig49944.12216.1 ID=prot_H-elongata_contig49944.12216.1|Name=mRNA_H-elongata_contig49944.12216.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MQDAEVEAVGVGEGKGSVKVDVDVDGKQLDRLWRWAGLFTAARMGIIPII
VCVTVA
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mRNA from alignment at H-elongata_contig49944:2194..4140+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49944.12216.1 ID=mRNA_H-elongata_contig49944.12216.1|Name=mRNA_H-elongata_contig49944.12216.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1947bp|location=Sequence derived from alignment at H-elongata_contig49944:2194..4140+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGACGCCGAAGTCGAGGCGGTTGGGGTGGGCGAGGGCAAGGGTTC
CGTAAAGGTCGACGTAGACGTCGATGGGAAACAATTAGACAGGCTCTGGA
GGTGGGCGGGACTCTTCACGGCGGCGAGAATGGGGGTGAGTCGAGTCGAG
TAGAGCGCTGCGGTATTCCCGCGATCCCGTACGATTATATTTTTATTTAA
AAGACTTTAAGCCCATTCTAACTCTCCGAACATCCACACCTTCTTGTCAC
CGTATTATTTTATACATCTGAACTCATTCACTTCTCAAAACCATGAGCAG
TGAAGTCCAGGGGACCAACTCTCGTCAGTTTGAAGTATTATATATATATA
TATATATATATATATATGTCTCGACAGGAAGGTAGTGTGTTAGCATTTTC
CGTGGTCAATTTTTCGTGTTTTTCGTCTTAAACTTTGTATACATTTTTCT
AAAAGATTGTGCATGGAGAGAAATTTAAAAAATGTCAGATTTATTGTGTC
ACAAGGGTTGAATCAAGATGGTTTTCGTCCATTTTCCGCCCTTTTCTCGT
TTTATTGTTAGTAACGAGTAATTAGATGGAACAGTCAAATTTTCGCGTGC
AAGTTTGAAAAAACATACACCGCATCGTGGCAGTGTAAACTGTAAACCTG
GGCCTGTGGCATGTGGCAACAATGACGCGCACGCGGTAGTGTGAAAAGGT
ATCGGTTGCCCCGCCATCTTTGTTGGCGTTTTCCTAAAATCGTTCGGCGT
ACGCGTCAACCACCATAAGATCTGGTCATAGAGCTGATATAGATAGGACT
AGCCCGCCGGACAGAACGCTGCTGTGCTGTGCGATTTCTACAAGAGGGCA
CCGACAACTAAAGAGGCACTGCCTTGGAATAGCCCGCGAAATCCCTGCTC
CTCCCGTCCGCGTATCGTGGCGTAACGGAGAAAAGCAGGGGGGAGAGAGT
GTATGTGGGGGGGGGGGGACATTGCCGAACGAGTGATCAGGATGCTCCGC
ACTTGTCTCTGGAAAACAGCTTCCGAGGTTCTCCACGGAGTTATCACACC
AACCAGCAAGCGTCCCAAGCGGATCCAGGGCCCAAAACAGGGTCGTCCTT
GATAAGCGTCATGGTTATGCGGAAGGAAGCGAGCGGCTTGATTTGCCGAG
CGTGGTTGTATCGACGAGTGGCCCCGCGTTTTCTTCTGGAGGGCGTAAGC
CTCCATTTTCCTGCACGGTGGCATTGACGCTGGTGGTCGTAGTTGTAGCG
GCAGCGGCAAGAGTAGACAGCCCTGGATGAGGTCGTGGTAGGGTCGCTCA
GACGTTTTTCAAGCCCTTGGCTGATCTGGCGATAATTTTCCCGACGCTGA
TGTAACGGCAGAGAAGTACGCCAAAGACCTTATTTATGCTATGCCTCCAA
ACCAACTCGAACCCGGGACCCATGCCCCTCGAGTTGAAGATCCTCACACA
AGCTAATGGAGGGCAAATCACTCACGGGAGAGGGGGCGGGGGGTTAGTTC
CACGTCCCCCTTGCATTGTGGGGATTGGGTGGTTGAGTAAATCAAGCCAA
TTACGAGTCCAGATGTGCACAAAGCTGACGACAGTTACGTACGCCTATCC
GGAGCGTGAGCGACGAGCTGCAGGGAAAAAACAACCCCACAAGAAATAGG
AGATGTTTGTCAGAAAACGTTAGAACACATGTTTTTTTGCCTAAAAAACG
CCGCCGCCGCTGGGCAGTGCGTTTATTTTTTAGAGCCAACGTAGTTGAGA
GAAAGAGGAGAGAAGCTTTCGAGTATATATTCAAATACCACCATCCTCTC
AACACGGTGCAATCCCCTGCTTTTTGTGAGGGTGTATAAAATTAGTCAAT
ACCTTCAACTCCTTGTGTCCCCTATCCCCTACCTCCCTACCCCCATTGTC
ATCCGCCTCCTCAGATTATTCCTATAATCGTCTGTGTGACTGTAGCG
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Coding sequence (CDS) from alignment at H-elongata_contig49944:2194..4140+

>mRNA_H-elongata_contig49944.12216.1 ID=mRNA_H-elongata_contig49944.12216.1|Name=mRNA_H-elongata_contig49944.12216.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig49944:2194..4140+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGACGCCGAAGTCGAGGCGGTTGGGGTGGGCGAGGGCAAGGGTTC
CGTAAAGGTCGACGTAGACGTCGATGGGAAACAATTAGACAGGCTCTGGA
GGTGGGCGGGACTCTTCACGGCGGCGAGAATGGGGATGCAGGACGCCGAA
GTCGAGGCGGTTGGGGTGGGCGAGGGCAAGGGTTCCGTAAAGGTCGACGT
AGACGTCGATGGGAAACAATTAGACAGGCTCTGGAGGTGGGCGGGACTCT
TCACGGCGGCGAGAATGGGGATTATTCCTATAATCGTCTGTGTGACTGTA
GCGATTATTCCTATAATCGTCTGTGTGACTGTAGCG
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