prot_H-elongata_contig49944.12216.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49944.12216.1
Unique Nameprot_H-elongata_contig49944.12216.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length56
Homology
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BLAST of mRNA_H-elongata_contig49944.12216.1 vs. uniprot
Match: A0A6H5K407_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K407_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 2.480e-5
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 0 
Query:   30 DRLWRWAGLFTAARMGIIPIIVCVTVA 56
            DRLWRW G  TAA+MG+IPIIVC TVA
Sbjct:  401 DRLWRWTGFLTAAKMGVIPIIVCATVA 427
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BLAST of mRNA_H-elongata_contig49944.12216.1 vs. uniprot
Match: D7FYP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYP0_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 2.480e-5
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 0 
Query:   30 DRLWRWAGLFTAARMGIIPIIVCVTVA 56
            DRLWRW G  TAA+MG+IPIIVC TVA
Sbjct:  402 DRLWRWTGFLTAAKMGVIPIIVCATVA 428
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49944.12216.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K407_9PHAE2.480e-577.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYP0_ECTSI2.480e-577.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 32..55
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 56..56
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..31
NoneNo IPR availableTMHMMTMhelixcoord: 33..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49944contigH-elongata_contig49944:2194..4140 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49944.12216.1mRNA_H-elongata_contig49944.12216.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49944 2194..4140 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49944.12216.1 ID=prot_H-elongata_contig49944.12216.1|Name=mRNA_H-elongata_contig49944.12216.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MQDAEVEAVGVGEGKGSVKVDVDVDGKQLDRLWRWAGLFTAARMGIIPII
VCVTVA
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