mRNA_H-elongata_contig49938.12215.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49938.12215.1
Unique NamemRNA_H-elongata_contig49938.12215.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Match: D7FIX0_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX0_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 1.770e-93
Identity = 151/256 (58.98%), Postives = 179/256 (69.92%), Query Frame = 1
Query:    1 QMENIRLVRPEHMGAVRSWRMRGLQKSARSLTPLGVAVLHNHEDIAKWLMGYGSEDPGCVACKRENLFREENRDLALVVKTWPELLPEVLQGFEVEDSRPKSSWDTDDKRKVTSTGWSERIYDLKLLYGSPEVSANRSPLAIFLSAGHPEMFDVKVVQMVVALKWSIFGQR-----------------------------------------YYLWELVRFLVLSMTFILGFIIWSESPNWVGHIEPGDDRLHVSG 645
            +M+ IRLV+PEHMGA RSWR+RGLQKSARSLTPLGVAVLHNHE IA+WLMGYG+E   C++CKR N+F+EENRDLALV KTWPELLPEVL+GF+ +    K SWDTD+KR V  TGWSER YD+KLLYG PEV+++RSPL+I L  GH  +F+VKVVQMVVALKWS+FG R                                         YY+WEL R+LVLS +FI+GF IW+E PNW G I+  DDR  V G
Sbjct:  506 KMQKIRLVKPEHMGAARSWRIRGLQKSARSLTPLGVAVLHNHEHIARWLMGYGTEGQHCISCKRNNIFKEENRDLALVAKTWPELLPEVLRGFQHDMKAQKYSWDTDEKRPVAPTGWSERTYDIKLLYGLPEVASSRSPLSILLQTGHTSLFEVKVVQMVVALKWSVFGHRPTRLGAARPSTHVWWIVMGCFPPVAESKALSGIMYNRTISRYYVWELGRYLVLSASFIMGFTIWAEVPNWAGPIDSDDDRGQVMG 761          
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 1.100e-78
Identity = 126/171 (73.68%), Postives = 146/171 (85.38%), Query Frame = 1
Query:    1 QMENIRLVRPEHMGAVRSWRMRGLQKSARSLTPLGVAVLHNHEDIAKWLMGYGSEDPGCVACKRENLFREENRDLALVVKTWPELLPEVLQGFEVEDSRPKSSWDTDDKRKVTSTGWSERIYDLKLLYGSPEVSANRSPLAIFLSAGHPEMFDVKVVQMVVALKWSIFGQR 513
            +M++IRLV+PEHMGA RSWR+RGLQKSARSLTPLGVAVLHNHE IAKWLMGYG+E   C++CKR NLF+E NRDLALV KTWPELLPEVLQGF+ +    K SWDTD+KR V  TGWSER YD+KLLYG PEV+++RSPL+I L  GH  +F+VKVVQMVVALKWS+FG R
Sbjct:  457 KMQDIRLVQPEHMGAARSWRIRGLQKSARSLTPLGVAVLHNHEHIAKWLMGYGTEGEQCISCKRNNLFKE-NRDLALVAKTWPELLPEVLQGFQHDRKVEKYSWDTDEKRPVAPTGWSERTYDIKLLYGLPEVASSRSPLSILLQTGHTSLFEVKVVQMVVALKWSVFGHR 626          
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Match: A0A7S1TWL2_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWL2_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.960e-29
Identity = 72/196 (36.73%), Postives = 113/196 (57.65%), Query Frame = 1
Query:    4 MENIRLVRPEHMGAVRSWRMRGLQKSARSLTPLGVAVLHNHEDIAKWLMGYGSEDPGCVACKRENLFREENRDLALVVKTWPELLPEVLQGFEVEDSRPKSSWDTDDKRKVTSTGWSERIYDLKLLYGSPEV-SANRSPLAIFLSAGHPEMFDVKVVQMVVALKWSIFGQRYYLWELVRFLVLSMTFILGFIIWSE 588
            + ++ L   EH+ A  SW  RGL  +AR L+PLGVA+LHN E +A+ L+      PG  A +R  +FR++N DLAL+ + WP L+P VL   +V          T D++   + G+  +   L   +G P   +   +PLAI   +G PE+    V  +V+ +KW +FGQR Y+ +L+R+ V+ +++ LGFII+ E
Sbjct:  549 ISDLGLAEDEHITARNSWPGRGLMAAARRLSPLGVAILHNQEAVAQLLVAVSPSTPGGCA-RRAAVFRDDNEDLALLARAWPSLVPAVLDATDV----------TVDEQ--AAGGYVVQTLRLHDWFGDPATRNVYDTPLAILSRSGRPEVLAHPVANLVIHMKWKLFGQRMYIMQLLRYAVVLVSYFLGFIIFPE 731          
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Match: A0A7R9U5T3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5T3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.510e-26
Identity = 63/186 (33.87%), Postives = 101/186 (54.30%), Query Frame = 1
Query:   31 EHMGAVRSWRMRGLQKSARSLTPLGVAVLHNHEDIAKWLMGYGSEDPGCVACKRENLFREENRDLALVVKTWPELLPEVLQGFEVEDSRPKSSWDTDDKRKVTSTGWSERIYDLKLLYGSPEVSANRSPLAIFLSAGHPE---MFDVKVVQMVVALKWSIFGQRYYLWELVRFLVLSMTFILGFII 579
            EH+ A  SW  RGL   A  L+PLGVA+LHN   +A+ LM       G    +R  +F ++N DL L+ K WP L+P +LQ F V+ ++            V + G+    Y +   +G        +PLA+ L     +   +++++++Q+V+ LKW +FG+RYY   L R++ L +T+I GFI+
Sbjct:  608 EHVTARNSWAARGLTSFAEHLSPLGVAILHNQGSLARLLMSIDCGS-GLDCRRRRTIFYDDNEDLRLLAKVWPSLIPALLQQFSVKTNQ------------VANLGYKATRYIIHPWFGHHNTPIYHTPLAVMLRFDGEDWNCLYNMRIIQVVITLKWQLFGKRYYYGALARYVFLVVTYIFGFIL 780          
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Match: A0A835Z0J0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J0_9STRA)

HSP 1 Score: 106 bits (265), Expect = 6.060e-23
Identity = 79/278 (28.42%), Postives = 118/278 (42.45%), Query Frame = 1
Query:   73 QKSARSLTPLGVAVLH---NHED---IAKWLMGYGSEDPG----CVACKRENLFREENRDLALVVKTWPELLPEVLQGF-----------------------------EVEDSRPKSSWDTDDKRKVT------------------------------------------------------------STGWSERIYDLKLLYGSPEVSANRSPLAIFLSAGHPEMFDVKVVQMVVALKWSIFGQRYYLWELVRFLVLSMTFILGFIIWSESPNWVGH 609
            ++S  + T   V VL    +H D   +A+WLMGYG   PG    C+  KR  LF+++  DL +V KTWPELLPEVL  F                              V+  R   +  +D   + T                                                            + GW ERIYD+KLLYG P++ A+ +PL+I L   +  +FD+ VV++++ LKW+++G  YY+WEL+R+    +TF +GFI       W+G+
Sbjct: 1783 KRSGDACTLTFVRVLQLICSHRDRVQVAQWLMGYG---PGHSVKCMRDKRALLFQDQCHDLRMVAKTWPELLPEVLNSFGSDVVKNSHFTAQDGRLERASEFFNIRSERVQHFRSVYNMMSDQSPQYTLMPVRAAPLSGGWVERIYNVKLLYCCNLLQERVQRYSEAYTRGFVVNNRFTLMPLRAATAAGGWVERIYDVKLLYGEPDIPASNTPLSILLDTHYAPVFDLPVVKLIIQLKWTLYGGSYYMWELMRYFGTVITFYMGFI-------WLGN 2050          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FIX0_ECTSI1.770e-9358.98Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5K0W6_9PHAE1.100e-7873.68Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S1TWL2_9STRA3.960e-2936.73Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U5T3_9STRA2.510e-2633.87Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A835Z0J0_9STRA6.060e-2328.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49938contigH-elongata_contig49938:433..2901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score308.1
Seed ortholog evalue3.1e-81
Seed eggNOG ortholog2880.D7FIX0
EggNOG free text desc.temperature-gated cation channel activity
EggNOG OGsCOG0666@1,KOG0510@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size645
Cds size642
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49938.12215.1prot_H-elongata_contig49938.12215.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49938 433..2898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930822.4739418-CDS-H-elongata_contig49938:432..5651622930822.4739418-CDS-H-elongata_contig49938:432..565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49938 433..565 -
1691679585.383643-CDS-H-elongata_contig49938:432..5651691679585.383643-CDS-H-elongata_contig49938:432..565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49938 433..565 -
1622930822.4904776-CDS-H-elongata_contig49938:1132..12481622930822.4904776-CDS-H-elongata_contig49938:1132..1248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49938 1133..1248 -
1691679585.3947954-CDS-H-elongata_contig49938:1132..12481691679585.3947954-CDS-H-elongata_contig49938:1132..1248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49938 1133..1248 -
1622930822.504479-CDS-H-elongata_contig49938:1611..17431622930822.504479-CDS-H-elongata_contig49938:1611..1743Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49938 1612..1743 -
1691679585.4113705-CDS-H-elongata_contig49938:1611..17431691679585.4113705-CDS-H-elongata_contig49938:1611..1743Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49938 1612..1743 -
1622930822.522205-CDS-H-elongata_contig49938:2311..24231622930822.522205-CDS-H-elongata_contig49938:2311..2423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49938 2312..2423 -
1691679585.4210615-CDS-H-elongata_contig49938:2311..24231691679585.4210615-CDS-H-elongata_contig49938:2311..2423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49938 2312..2423 -
1622930822.537581-CDS-H-elongata_contig49938:2749..28981622930822.537581-CDS-H-elongata_contig49938:2749..2898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49938 2750..2898 -
1691679585.4308734-CDS-H-elongata_contig49938:2749..28981691679585.4308734-CDS-H-elongata_contig49938:2749..2898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49938 2750..2898 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930822.555727-UTR-H-elongata_contig49938:2898..29011622930822.555727-UTR-H-elongata_contig49938:2898..2901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49938 2899..2901 -
1691679585.4413202-UTR-H-elongata_contig49938:2898..29011691679585.4413202-UTR-H-elongata_contig49938:2898..2901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49938 2899..2901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49938.12215.1

>prot_H-elongata_contig49938.12215.1 ID=prot_H-elongata_contig49938.12215.1|Name=mRNA_H-elongata_contig49938.12215.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp
MENIRLVRPEHMGAVRSWRMRGLQKSARSLTPLGVAVLHNHEDIAKWLMG
YGSEDPGCVACKRENLFREENRDLALVVKTWPELLPEVLQGFEVEDSRPK
SSWDTDDKRKVTSTGWSERIYDLKLLYGSPEVSANRSPLAIFLSAGHPEM
FDVKVVQMVVALKWSIFGQRYYLWELVRFLVLSMTFILGFIIWSESPNWV
GHIEPGDDRLHVSG
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mRNA from alignment at H-elongata_contig49938:433..2901-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49938.12215.1 ID=mRNA_H-elongata_contig49938.12215.1|Name=mRNA_H-elongata_contig49938.12215.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2469bp|location=Sequence derived from alignment at H-elongata_contig49938:433..2901- (Himanthalia elongata Himel1 dioecious)
CAGATGGAGAACATCCGCCTTGTAAGGCCCGAGCACATGGGTGCGGTGAG ATCTTGGCGCATGAGGGGGTTGCAGAAGAGCGCTCGCTCGCTGACACCCC TAGGTGTGGCTGTCCTCCACAACCACGAGGACATCGCCAAGTGGCTCATG GGGTGAGATGGTATGAGAGGCTTATGATGAAGGAGGTGGGGGGGGAGGGC AAAAGAGAGATTGATGAAAAAATGTAAGAATAACTGGTGCGGAAAAAACA AAATCGTGGAACAAAGAAAAAAAACTTGGAAAGAGAAAAAAACGACAAGA ATCAAACATGGGAAAGTGAGGAACTTAAAAAAGATGAAAGTATCTATATA AAAAGAGACAAGGTAGAGAAAGAGGCATCTAAGGAAAGCAAAAAGCTAAT GTGGATAAGGTGTGCTCTTGGTTCCCGCGCCGGGACGTCACGCGGACGAT GCCCCCCCCCCAACCCAAATGGGGACAGGTACGGATCGGAGGATCCCGGG TGTGTCGCGTGCAAGCGGGAAAACCTCTTCAGGGAGGAAAATAGGGACCT CGCTCTTGTCGTCAAGACATGGCCCGAGCTTCTGCCTGAGGTGACCTACC GCATTCTCAAAAGGGTGGGGGGGGGTGAAGTGCTGTAGTTCACCGTATTT TTAGCGTAATGTTTTCGGTTCGAGTTTCTGTCGTCGTGTACGCTGACGGC TGCACGGCTGCACCAAAAGCCCTTGGCGAGGTCCCTCGACAGAATCTGGA GACGCGCGAGGCAAGGGAAATGGGTGATGTCATCGCCGCCTTGTTTCCTT GGCAATCTTAACCATTGTCTCTTAATGGTATCTAATCTTACTAAGCGTAA CTTCCCGGTGGACAGGCGGGTCGAGGGTCTAGAGCAGACGCGTCGCTCGG CTATAATCTTGGACGGACCGAGTGTCTGTGGCGACGACGACAAACGATAA GCATCACCAGAAATGCCTGGAGGGAAGGGGGGGGCGGGGGGATGAATGAA TCCCCCCCCTCCCCCTCTCCAGGCGAGACCGATCCCCCCTCACGTGCATG TCTTATCCTTTTCCTAGTGCGCTAGATTTTATACACACAGTGCTTCGCCG CCCCGTCTTCTCCCCGCCTTCCCGCCTTCTCCCTTCGTCGTTTTGGCTCG CCCGCCAGGTGCTGCAGGGGTTCGAGGTGGAGGACAGCAGGCCAAAATCC TCGTGGGACACGGATGACAAGCGAAAGGTGACCTCCACAGGCTGGTCGGA GCGGATTTATGACCTGAAGCTCCTCTATGGCTCTCCGGAGGTGGGTGGGC GAGGAACAGCACACTTGTGTCTGTTTTTGTTTGTTTCCTGGTGGCGGGGT TTCCTCCAGGGCTTTGATCGCTCCGCGCTTGGGATGGGTGATGGGTACCG TTCAGCGTGGGACAGGAGGACTTGAGGTTCGATTATTCGACGTATCAGGG AGGGGGAGGCTTGTCCCTAGGCCCCCTCTCTAGCGTGGTAAGAGCCGATT CTGGGCAAAAACAGTTTGCCAACCCTCGCATTCGTATAATGCCATGTACC TCGGGTTGGCTCCCTTCCTGTTGCTCTTGAAGTTCCTACGAGTGCCAGTT TGGCGGAGTTCGAATGTTCGCATCTCGGCATCGTGTCGCGCGTTGCGTCG CAGGTTTCCGCGAACCGCTCGCCCCTGGCTATCTTCCTCAGCGCAGGGCA CCCGGAGATGTTCGATGTGAAGGTGGTCCAGATGGTCGTGGCACTCAAGT GGTCCATCTTTGGGCAGAGGTGAATGAAAAATGCCACCCTCCACGACACA TTTACGAAACCCCGCGTCCGTTTCGCGCTCCACCGTGCACAGCAATGTAC CAGGTACTATTTACAGTAACGAGGTGTTTGGCGGTTTAAGGTACAATTTA CCAGGTACGAGTTATATACTGTAGTAAACATATAATAGGTGGAGCGATGA ACAAGAACGATGTCATCACCACCGTCTGTTTTGTTTTGATGAGTGGAAGG CTCGCGAAGGCGCCAGGCCATGAGTGGGTGGGTGACTGGGGGTCGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGTTGGGGGAGTAGTTGTATCCCTTTGA ATCTGTGTTGTGGTGATAGCCGCGGCGCGGGCGCGGATGTATGTCGAGCG GTCCTGTCTTTTTCTCTTTTGAGGTGGCGCCGCCTGCGAATGGAAAACGA CCCTTCACCTCCTTCCCCTCCTTCCCCTCCATCGCCGTGACGGCTTGGTC GGATCGGATCGGTTCGGGTCCGTTTGATACTTCCAGGTACTACCTTTGGG AGCTGGTGCGGTTCTTGGTGCTCTCAATGACCTTCATTCTTGGCTTCATC ATATGGAGCGAGTCGCCCAACTGGGTCGGGCACATCGAGCCCGGAGATGA TCGCCTGCACGTGAGCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig49938:433..2901-

>mRNA_H-elongata_contig49938.12215.1 ID=mRNA_H-elongata_contig49938.12215.1|Name=mRNA_H-elongata_contig49938.12215.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig49938:433..2901- (Himanthalia elongata Himel1 dioecious)
ATGGAGAACATCCGCCTTGTAAGGCCCGAGCACATGGGTGCGGTGAGATC
TTGGCGCATGAGGGGGTTGCAGAAGAGCGCTCGCTCGCTGACACCCCTAG
GTGTGGCTGTCCTCCACAACCACGAGGACATCGCCAAGTGGCTCATGGGA
TGGAGAACATCCGCCTTGTAAGGCCCGAGCACATGGGTGCGGTGAGATCT
TGGCGCATGAGGGGGTTGCAGAAGAGCGCTCGCTCGCTGACACCCCTAGG
TGTGGCTGTCCTCCACAACCACGAGGACATCGCCAAGTGGCTCATGGGGT
ACGGATCGGAGGATCCCGGGTGTGTCGCGTGCAAGCGGGAAAACCTCTTC
AGGGAGGAAAATAGGGACCTCGCTCTTGTCGTCAAGACATGGCCCGAGCT
TCTGCCTGAGGTACGGATCGGAGGATCCCGGGTGTGTCGCGTGCAAGCGG
GAAAACCTCTTCAGGGAGGAAAATAGGGACCTCGCTCTTGTCGTCAAGAC
ATGGCCCGAGCTTCTGCCTGAGGTGCTGCAGGGGTTCGAGGTGGAGGACA
GCAGGCCAAAATCCTCGTGGGACACGGATGACAAGCGAAAGGTGACCTCC
ACAGGCTGGTCGGAGCGGATTTATGACCTGAAGCTCCTCTATGGCTCTCC
GGAGGTGCTGCAGGGGTTCGAGGTGGAGGACAGCAGGCCAAAATCCTCGT
GGGACACGGATGACAAGCGAAAGGTGACCTCCACAGGCTGGTCGGAGCGG
ATTTATGACCTGAAGCTCCTCTATGGCTCTCCGGAGGTTTCCGCGAACCG
CTCGCCCCTGGCTATCTTCCTCAGCGCAGGGCACCCGGAGATGTTCGATG
TGAAGGTGGTCCAGATGGTCGTGGCACTCAAGTGGTCCATCTTTGGGCAG
AGGTTTCCGCGAACCGCTCGCCCCTGGCTATCTTCCTCAGCGCAGGGCAC
CCGGAGATGTTCGATGTGAAGGTGGTCCAGATGGTCGTGGCACTCAAGTG
GTCCATCTTTGGGCAGAGGTACTACCTTTGGGAGCTGGTGCGGTTCTTGG
TGCTCTCAATGACCTTCATTCTTGGCTTCATCATATGGAGCGAGTCGCCC
AACTGGGTCGGGCACATCGAGCCCGGAGATGATCGCCTGCACGTGAGCGG
GGTACTACCTTTGGGAGCTGGTGCGGTTCTTGGTGCTCTCAATGACCTTC
ATTCTTGGCTTCATCATATGGAGCGAGTCGCCCAACTGGGTCGGGCACAT
CGAGCCCGGAGATGATCGCCTGCACGTGAGCGGG
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