mRNA_H-elongata_contig49905.12212.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49905.12212.1
Unique NamemRNA_H-elongata_contig49905.12212.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 207 bits (528), Expect = 1.960e-58
Identity = 121/325 (37.23%), Postives = 186/325 (57.23%), Query Frame = 1
Query:    7 EPITMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE*IYVELP--EAYRDSRNQVGQLKKAMYGLVHAGLLW*KQFGVELEAKGFQRSQADPCVFRWILHGPVVVVIVVY--VDNLLVASVTKRDEEQVVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTRIVPSAAG-GKTLPKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFA 966
            +P ++ EA  S+EWP+WK AI +EM    + G + +VE PK   ++  + VF+ K   +  IE YK RLVAQGF QV GI   E+ +P     SI ++L++ A   WE  Q++V  AYL  D+EE IY++ P  +A     + V +LK+ +YGL  +G  + K+   EL + G  RS+ D CVF W+ +   V+++++   VD+  +A  TK       R++ + F + DLGE  + LG  + RDR+  TL   QH YI  +  RF +   + + +    G  L     P T  + E+M+ IPYRE++G+LM+AA  TRPDI++A
Sbjct:  111 DPASLNEAMQSTEWPKWKEAIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVF-WLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYA 433          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A6A3JRZ2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JRZ2_9STRA)

HSP 1 Score: 199 bits (507), Expect = 3.440e-58
Identity = 123/315 (39.05%), Postives = 179/315 (56.83%), Query Frame = 1
Query:   34 ASSEWPQWKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE*IYVELPEAYRDSRNQVGQLKKAMYGLVHAGLLW*KQFGVELEAKGFQRSQADPCVF-RWILHGPVVVVIVVYVDNLLVASVTKRDEEQVVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTRIV--PSAAGGKTLPKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAA 969
            AS +  QW+ A+  E+      G W +V R      +  R VF +K ++ GR+ +YK RLVA+GF+Q  GI   E+ SP     SIR+VLS+ AA  +   QL+ D A+L +++++ +Y+E+P    ++R+   QL KA+YGL  A   W K         GF+   AD CV+ +   +G + V +  YVD++++A+ T  D  +V   L + F +K+LG A + LG  I  D  AGTLK  Q +YI  V +RFG    + V  P AAG K L K+ SP TDAE   MR  PYR ++G L++  T TRPDI+F A
Sbjct:    2 ASDDAAQWREAMDAELLSHERNGTWTLVPRGTANRTIGCRWVFAKKRDQYGRVVRYKARLVAKGFKQKYGIDFFETYSPVANMNSIRVVLSVCAAYEYRMEQLDADTAFLNSELKDRVYMEVPFGIENARDYQYQLNKAIYGLKQAASAWNKTIHRVFLGNGFKSCGADQCVYVKRSKNGFIYVCL--YVDDMIIAAKTSEDIREVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTLKIKQTRYIDDVVKRFGQENAKPVDNPCAAGLK-LSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFMA 313          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 210 bits (535), Expect = 1.640e-57
Identity = 124/325 (38.15%), Postives = 187/325 (57.54%), Query Frame = 1
Query:    7 EPITMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE*IYVELP--EAYRDSRNQVGQLKKAMYGLVHAGLLW*KQFGVELEAKGFQRSQADPCVFRWILHGPVVVVIVVY--VDNLLVASVTKRDEEQVVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTRIVPSAAG-GKTLPKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFA 966
            +P ++ EA  S+EWP+WK AIA+EM    + G + +VE PK   ++  + VF+ K   +G IE YK RLVAQGF QV GI   E+ +P     SIR++L++ A   WE  Q++V  AYL  D+EE IY+  P  +A     + V +LK+ +YGL  +G  + K+   EL + G  RS+ D CVF W+ +   V+++++   VD+  +A  TK       R++ + F + DLGE  + LG  + RDR+A TL   Q  YI  +  RF +   + + +    G  L     P T  + E+M+ IPYRE +G+LM+AA  TRPDI++A
Sbjct:  921 DPASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVF-WLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYA 1243          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A2P6SMQ0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SMQ0_ROSCH)

HSP 1 Score: 201 bits (510), Expect = 5.950e-55
Identity = 119/326 (36.50%), Postives = 189/326 (57.98%), Query Frame = 1
Query:    1 DPEPITMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE*IYVELPEAYRDS--RNQVGQLKKAMYGLVHAGLLW*KQFGVELEAKGFQRSQADPCVFRWILHGPVVVVIVVYVDNLLVASVTKRDEEQVVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTRI--VPSAAGGKTLPKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFA 966
            D +P +  +A  S++   W +A+  E+D     GVW++V+  +    +  + VFK K +  G IE++K RLVA+GF Q +GI+  E+ SP   + S R++++++A    E  Q++V  A+L  ++EE I++  PE + ++   N V +LKK++YGL  A   W K+F   + + GF  +  D CV+  ++ G   + +++YVD++L+AS   +  +     L S F +K+LGEASY LG  I RDR  G L   Q  YI  + +RFG+       VP + G K L K+  P+T+ E  EM  IPY  +VG+LM+A   TRPD+SFA
Sbjct:  245 DNDPTSFKQATGSNDSDAWTQAMIAELDSMYKNGVWELVKPKENHKPIGCKWVFKTKRDVSGNIERHKARLVAKGFTQKEGIYFTETFSPVSTKDSFRIIMALVAHYDMELHQMDVKTAFLNGELEEEIFMVQPEGFIEAGKENMVCRLKKSIYGLKQASRQWYKKFDSVVSSFGFTENLVDECVYLKVV-GNNFIFLILYVDDILLASSNVKLLKDTKAFLSSNFDMKELGEASYVLGIEIKRDRKQGLLGLSQQNYISKILKRFGMETCANGEVPMSKGDK-LTKNQCPKTENEKTEMESIPYARLVGSLMYAQVCTRPDLSFA 568          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A401H6Z2_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H6Z2_9APHY)

HSP 1 Score: 202 bits (515), Expect = 7.350e-55
Identity = 121/325 (37.23%), Postives = 184/325 (56.62%), Query Frame = 1
Query:    7 EPITMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE*IYVELP--EAYRDSRNQVGQLKKAMYGLVHAGLLW*KQFGVELEAKGFQRSQADPCVFRWILHGPVVVVIVVY--VDNLLVASVTKRDEEQVVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTRIVPSAAG-GKTLPKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFA 966
            +P ++ EA  S+EWP+W  AIA+EM    + G + +VE PK   ++  + VF+ K   +G IE YK RLVAQGF QV GI   E+ +P     SIR++L++ A   WE  Q++V   YL  D+EE IY+  P  +A     + V +LK+ +YGL  +G  + K+   EL + G  RS+ D C+F W+ +   V+++++   VD+  +A  TK       R++   F + DLGE  + LG  + RDR+A TL   Q  YI  +  RF +   + + +    G  L     P T  + E+M+ IPYRE +G+LM+AA  TRPDI++A
Sbjct:  744 DPASLNEAMQSTEWPKWTEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILTLAAHYDWELHQMDVKGVYLNGDLEEEIYMWQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCIF-WLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISMHFEMSDLGEMHWILGIEVRRDRDARTLSLSQCAYIDMILARFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYA 1066          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 1.840e-54
Identity = 110/305 (36.07%), Postives = 177/305 (58.03%), Query Frame = 1
Query:   55 WKRAIAREMDGQTARGVWQVVE-RPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE*IYVELPEAYRDSRNQVGQLKKAMYGLVHAGLLW*KQFGVELEAKGFQRSQADPCVFRWILHGPVVVVIVVYVDNLLVASVTKRDEEQVVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTRIVPSAAGGKTLPKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFA 966
            W++A+  E +G    G +  V+  P+GR  +S +  F  K  K+G+I+ +K RLVA+GF Q+  +    SSSP P+  SI+++L++           +V  AY  A ++E ++++LP    D  +++ + ++A+YGL  +G  W       L   GF++ +ADPCVFR ++   VV++IV+YVD++LVA  +  D E+++  L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  T  +P+  G    PK +        EE  + P RE +G++MW +T +RPD+SFA
Sbjct:  752 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFA 1048          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 1.970e-54
Identity = 110/305 (36.07%), Postives = 177/305 (58.03%), Query Frame = 1
Query:   55 WKRAIAREMDGQTARGVWQVVE-RPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE*IYVELPEAYRDSRNQVGQLKKAMYGLVHAGLLW*KQFGVELEAKGFQRSQADPCVFRWILHGPVVVVIVVYVDNLLVASVTKRDEEQVVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTRIVPSAAGGKTLPKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFA 966
            W++A+  E +G    G +  V+  P+GR  +S +  F  K  K+G+I+ +K RLVA+GF Q+  +    SSSP P+  SI+++L++           +V  AY  A ++E ++++LP    D  +++ + ++A+YGL  +G  W       L   GF++ +ADPCVFR ++   VV++IV+YVD++LVA  +  D E+++  L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  T  +P+  G    PK +        EE  + P RE +G++MW +T +RPD+SFA
Sbjct: 1131 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFA 1427          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 1.980e-54
Identity = 110/305 (36.07%), Postives = 177/305 (58.03%), Query Frame = 1
Query:   55 WKRAIAREMDGQTARGVWQVVE-RPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE*IYVELPEAYRDSRNQVGQLKKAMYGLVHAGLLW*KQFGVELEAKGFQRSQADPCVFRWILHGPVVVVIVVYVDNLLVASVTKRDEEQVVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTRIVPSAAGGKTLPKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFA 966
            W++A+  E +G    G +  V+  P+GR  +S +  F  K  K+G+I+ +K RLVA+GF Q+  +    SSSP P+  SI+++L++           +V  AY  A ++E ++++LP    D  +++ + ++A+YGL  +G  W       L   GF++ +ADPCVFR ++   VV++IV+YVD++LVA  +  D E+++  L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  T  +P+  G    PK +        EE  + P RE +G++MW +T +RPD+SFA
Sbjct: 1151 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFA 1447          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 2.000e-54
Identity = 110/305 (36.07%), Postives = 177/305 (58.03%), Query Frame = 1
Query:   55 WKRAIAREMDGQTARGVWQVVE-RPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE*IYVELPEAYRDSRNQVGQLKKAMYGLVHAGLLW*KQFGVELEAKGFQRSQADPCVFRWILHGPVVVVIVVYVDNLLVASVTKRDEEQVVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTRIVPSAAGGKTLPKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFA 966
            W++A+  E +G    G +  V+  P+GR  +S +  F  K  K+G+I+ +K RLVA+GF Q+  +    SSSP P+  SI+++L++           +V  AY  A ++E ++++LP    D  +++ + ++A+YGL  +G  W       L   GF++ +ADPCVFR ++   VV++IV+YVD++LVA  +  D E+++  L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  T  +P+  G    PK +        EE  + P RE +G++MW +T +RPD+SFA
Sbjct: 1294 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFA 1590          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI)

HSP 1 Score: 194 bits (494), Expect = 2.880e-54
Identity = 115/323 (35.60%), Postives = 185/323 (57.28%), Query Frame = 1
Query:    7 EPITMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE*IYVELPEAYR--DSRNQVGQLKKAMYGLVHAGLLW*KQFGVELEAKGFQRSQADPCVFRWILHGPVVVVIVVYVDNLLVASVTKRDEEQVVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKTRI--VPSAAGGKTLPKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISF 963
            +PI++ + + SS   +W +A+  EM      GVW +VE PKG   +  + +FK K +  G I +YK RLVA+GF Q +GI  +E+ SP  ++ S R++++++A    E  Q++V  A+L  +++E IY+  PE +   DS+  V +LK+++YGL  A   W ++F   + + GF+ +  D C++     G   +++V+YVD++L+AS       + +R L S F +KDLG AS+ LG  I RDR+ G L   Q  YI  V  RFG++       P A G K       P+ + E ++M + PY   VG+LM+A   TRPDI++
Sbjct:    6 DPISLSQVKQSSNSEKWIKAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLK-FSGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNYAPGDTPVAKGDK-FSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAY 326          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GP19_9APHY1.960e-5837.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3JRZ2_9STRA3.440e-5839.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GN13_9APHY1.640e-5738.15Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A2P6SMQ0_ROSCH5.950e-5536.50Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A401H6Z2_9APHY7.350e-5537.23Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KSG8_9PHAE1.840e-5436.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.970e-5436.07Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.980e-5436.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.000e-5436.07Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A438HUL4_VITVI2.880e-5435.60Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49905contigH-elongata_contig49905:7..978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score89.0
Seed ortholog evalue1.7e-15
Seed eggNOG ortholog120017.I2FSS7
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size972
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49905.12212.1prot_H-elongata_contig49905.12212.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49905 595..960 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930822.2240787-UTR-H-elongata_contig49905:6..5941622930822.2240787-UTR-H-elongata_contig49905:6..594Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49905 7..594 -
1691679585.2510457-UTR-H-elongata_contig49905:6..5941691679585.2510457-UTR-H-elongata_contig49905:6..594Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49905 7..594 -
1622930822.249822-UTR-H-elongata_contig49905:960..9781622930822.249822-UTR-H-elongata_contig49905:960..978Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49905 961..978 -
1691679585.274034-UTR-H-elongata_contig49905:960..9781691679585.274034-UTR-H-elongata_contig49905:960..978Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49905 961..978 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930822.236271-CDS-H-elongata_contig49905:594..9601622930822.236271-CDS-H-elongata_contig49905:594..960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49905 595..960 -
1691679585.2658985-CDS-H-elongata_contig49905:594..9601691679585.2658985-CDS-H-elongata_contig49905:594..960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49905 595..960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49905.12212.1

>prot_H-elongata_contig49905.12212.1 ID=prot_H-elongata_contig49905.12212.1|Name=mRNA_H-elongata_contig49905.12212.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKR
KIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAA
LCWEARQLEVDMAYLEADVEE*
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mRNA from alignment at H-elongata_contig49905:7..978-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49905.12212.1 ID=mRNA_H-elongata_contig49905.12212.1|Name=mRNA_H-elongata_contig49905.12212.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=972bp|location=Sequence derived from alignment at H-elongata_contig49905:7..978- (Himanthalia elongata Himel1 dioecious)
GACCCAGAGCCGATAACCATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCC GCAATGGAAAAGGGCGATCGCGCGCGAGATGGATGGGCAAACTGCTCGAG GCGTGTGGCAGGTGGTGGAGCGCCCAAAAGGGAGGATGGTACTGAGCAAG AGAGTAGTTTTCAAGCGCAAAATTGAGAAGGATGGAAGGATAGAGAAGTA TAAATGTCGTCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGTATACACT GCGAGGAATCCTCTTCTCCGACGCCTGCGCAGGTCAGCATTAGAATGGTA CTCAGCATGATCGCGGCTCTCTGCTGGGAGGCGCGGCAGCTGGAGGTCGA CATGGCCTACCTGGAGGCCGATGTGGAGGAGTAAATCTACGTTGAGCTCC CGGAGGCATACCGTGACTCCAGGAATCAAGTCGGCCAACTAAAGAAGGCA ATGTACGGACTCGTCCATGCTGGGCTGCTGTGGTAAAAACAGTTCGGGGT CGAGCTCGAGGCGAAGGGTTTTCAGAGATCTCAAGCCGACCCATGCGTGT TCCGGTGGATTCTCCACGGGCCAGTGGTAGTCGTCATCGTAGTCTACGTC GACAACCTGCTGGTTGCTAGTGTGACGAAACGTGACGAAGAGCAAGTAGT GAGGGACCTGTGCTCCTGTTTCCCCATCAAGGATCTGGGGGAAGCTTCAT ATTACCTGGGATGTCACATCACGCGGGATCGGAACGCCGGGACACTGAAG TTCGACCAGCATCAGTACATACAGACTGTGGCGGAACGTTTTGGCGTTAC GAAGACCAGAATCGTCCCGTCTGCGGCAGGAGGAAAAACCCTTCCGAAAT CAGACAGCCCGCAAACGGACGCAGAGGTTGAAGAAATGCGCCAGATTCCC TACCGAGAAATCGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGGCC CGACATTTCATTCGCTGCGCAC
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Coding sequence (CDS) from alignment at H-elongata_contig49905:7..978-

>mRNA_H-elongata_contig49905.12212.1 ID=mRNA_H-elongata_contig49905.12212.1|Name=mRNA_H-elongata_contig49905.12212.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig49905:7..978- (Himanthalia elongata Himel1 dioecious)
ATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCCGCAATGGAAAAGGGCGAT
CGCGCGCGAGATGGATGGGCAAACTGCTCGAGGCGTGTGGCAGGTGGTGG
AGCGCCCAAAAGGGAGGATGGTACTGAGCAAGAGAGTAGTTTTCAAGCGC
AAAATTGAGAAGGATGGAAGGATAGAGAAGTATAAATGTCGTCTCGTGGC
GCAGGGTTTCAGGCAGGTCAAAGGTATACACTGCGAGGAATCCTCTTCTC
CGACGCCTGCGCAGGTCAGCATTAGAATGGTACTCAGCATGATCGCGGCT
CTCTGCTGGGAGGCGCGGCAGCTGGAGGTCGACATGGCCTACCTGGAGGC
CGATGTGGAGGAGTAAATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCCGC
AATGGAAAAGGGCGATCGCGCGCGAGATGGATGGGCAAACTGCTCGAGGC
GTGTGGCAGGTGGTGGAGCGCCCAAAAGGGAGGATGGTACTGAGCAAGAG
AGTAGTTTTCAAGCGCAAAATTGAGAAGGATGGAAGGATAGAGAAGTATA
AATGTCGTCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGTATACACTGC
GAGGAATCCTCTTCTCCGACGCCTGCGCAGGTCAGCATTAGAATGGTACT
CAGCATGATCGCGGCTCTCTGCTGGGAGGCGCGGCAGCTGGAGGTCGACA
TGGCCTACCTGGAGGCCGATGTGGAGGAGTAA
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