prot_H-elongata_contig49905.12212.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49905.12212.1
Unique Nameprot_H-elongata_contig49905.12212.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length122
Homology
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 94.0 bits (232), Expect = 6.780e-20
Identity = 49/119 (41.18%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    3 EAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE 121
            EA  S +WPQW++AI +EM        + +VE P+   V+  + VF+ K   +G+IE YK RLVAQGF Q+ GI   ++ +P     SIR++L++ A   W+  Q++V  AYL AD+EE
Sbjct:  965 EAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEE 1083          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA)

HSP 1 Score: 87.4 bits (215), Expect = 3.010e-19
Identity = 41/109 (37.61%), Postives = 69/109 (63.30%), Query Frame = 0
Query:   13 WKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE 121
            W+ A+  E +    +G W++V  P+ R V+  + V+K K ++DG++ +YK RLVAQGF Q  G+  +E+ SP     ++R+VLS+ A   W+ RQL+V  A+L  +++E
Sbjct:   65 WRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVLSLAAMNKWDLRQLDVKNAFLHGELQE 173          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI)

HSP 1 Score: 90.5 bits (223), Expect = 1.100e-18
Identity = 44/119 (36.97%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    3 EAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE 121
            EA+  S+W +W +A+  +MD       W +V+ P GR  +  R V+K K++++G+ +++K RLVAQGF QV G+   E+ +P     S+R++L++ A   W   Q++V  AYL  D+EE
Sbjct:  737 EARRRSDWEKWNKAMDEQMDALVGMHTWDLVQLPPGRKAIGSRWVYKLKLDEEGKADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFGWVIHQVDVVTAYLNGDLEE 855          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: UPI001CB79F24 (hypothetical protein n=1 Tax=Blastococcus sp. CPCC 205250 TaxID=2732513 RepID=UPI001CB79F24)

HSP 1 Score: 86.7 bits (213), Expect = 1.170e-18
Identity = 50/119 (42.02%), Postives = 70/119 (58.82%), Query Frame = 0
Query:    3 EAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE 121
            EA+AS +  QW+ A+  EM        W +V+ PK R  +  + VFKRK + +G+I KYK RLVA+G+ Q++G+   E  SP     SIR VLS  AA   E  Q++V  A+L  D+EE
Sbjct:   83 EARASEDANQWEEAMKDEMKSLDQNHTWNLVKLPKDRKAIGCKWVFKRKQDAEGKIGKYKARLVAKGYAQIEGVDYAEIFSPVAKLTSIRTVLSAAAAYDLEIEQMDVKTAFLHGDLEE 201          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A5N6LDN8_9ASTR (Integrase catalytic domain-containing protein n=5 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LDN8_9ASTR)

HSP 1 Score: 90.1 bits (222), Expect = 1.470e-18
Identity = 50/119 (42.02%), Postives = 71/119 (59.66%), Query Frame = 0
Query:    3 EAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE 121
            +A  + E PQWK AI  E+D       W++V+ P G   L  R +FKRK+E DG I+KYK RLV +GFRQ +G+   ++ SP     SIR+VL++ A    E  Q++V   +L  D+EE
Sbjct:  276 DAVTTLEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMEADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTTFLNGDLEE 394          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A5C3E5T1_9BASI (Uncharacterized protein n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E5T1_9BASI)

HSP 1 Score: 90.1 bits (222), Expect = 1.510e-18
Identity = 44/119 (36.97%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    3 EAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE 121
            EA+   +WP W+ AI +E+   +  G W + + P GR  +  + VFK K++ DG ++KYK RLVAQGF Q  G+  +E+ +P     ++R+++++ A   W A Q++V  AYL  ++EE
Sbjct:  835 EAKRRPDWPHWETAIKKELASLSENGTWTLEDLPPGRRAVGSKWVFKIKLKADGTVDKYKARLVAQGFTQQHGVDYDETFAPVLKFATLRLLIALAAQEGWLAHQMDVITAYLNGNLEE 953          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A2C5X5E6_9PEZI (Copia protein n=1 Tax=Ceratocystis fimbriata CBS 114723 TaxID=1035309 RepID=A0A2C5X5E6_9PEZI)

HSP 1 Score: 84.3 bits (207), Expect = 2.610e-18
Identity = 41/109 (37.61%), Postives = 69/109 (63.30%), Query Frame = 0
Query:   13 WKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE 121
            W+RAI RE++  T  G W+ V +P+G + +  R VF +K + DG++EKYK RLV +GFRQ  G++  ES +PTP   ++R+ L+ +     E  Q++   A+ ++ ++E
Sbjct:   24 WRRAIERELNTLTEFGTWRFVPKPEGCVPIDTRFVFAKKYDLDGKLEKYKARLVVRGFRQEYGVNFFESFAPTPGSATLRLFLASVCQYDLECHQIDACNAFAQSRLKE 132          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 83.6 bits (205), Expect = 5.740e-18
Identity = 44/106 (41.51%), Postives = 65/106 (61.32%), Query Frame = 0
Query:    3 EAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQL 108
            EA  S +  +WK A+  E++       W +V RP+GR V+  + VFKRK+ KDG++E+YK RLVA+G+ QV+GI  +E+ SP     SIR +L+      W+  QL
Sbjct:   36 EALTSPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDWQVHQL 141          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 88.2 bits (217), Expect = 7.150e-18
Identity = 46/119 (38.66%), Postives = 74/119 (62.18%), Query Frame = 0
Query:    3 EAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE 121
            +A +  +  +W++A   E++     GV++ V RP+ R ++  + VFK K   DG++EKYK RLVAQGF QV+GI   E+ +P     SIR++L++ A   WE  Q++V  A+L  ++EE
Sbjct: 1000 DAMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEE 1118          
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 87.8 bits (216), Expect = 9.580e-18
Identity = 42/109 (38.53%), Postives = 67/109 (61.47%), Query Frame = 0
Query:   13 WKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKRKIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAALCWEARQLEVDMAYLEADVEE 121
            W+ A+A+E++       W+VV+ P  +  +  + ++K K   DG IE+YK RLVAQGF Q++GI  +E  SP     S+R  L+++ A  WE  Q++V+ A+L  D+EE
Sbjct:  565 WREAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEE 673          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49905.12212.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GQU1_9APHY6.780e-2041.18Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
A0A540NMU0_MALBA3.010e-1937.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177U1E5_9BASI1.100e-1836.97Integrase catalytic domain-containing protein n=2 ... [more]
UPI001CB79F241.170e-1842.02hypothetical protein n=1 Tax=Blastococcus sp. CPCC... [more]
A0A5N6LDN8_9ASTR1.470e-1842.02Integrase catalytic domain-containing protein n=5 ... [more]
A0A5C3E5T1_9BASI1.510e-1836.97Uncharacterized protein n=2 Tax=Ustilago trichopho... [more]
A0A2C5X5E6_9PEZI2.610e-1837.61Copia protein n=1 Tax=Ceratocystis fimbriata CBS 1... [more]
UPI0015A81C6A5.740e-1841.51uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A0C2WN23_AMAMK7.150e-1838.66Integrase catalytic domain-containing protein (Fra... [more]
A0A438E4T4_VITVI9.580e-1838.53Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 105..121
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 3..113
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 29..121
e-value: 9.4E-20
score: 71.3
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..113

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49905contigH-elongata_contig49905:595..960 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49905.12212.1mRNA_H-elongata_contig49905.12212.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49905 7..978 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49905.12212.1 ID=prot_H-elongata_contig49905.12212.1|Name=mRNA_H-elongata_contig49905.12212.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGRMVLSKRVVFKR
KIEKDGRIEKYKCRLVAQGFRQVKGIHCEESSSPTPAQVSIRMVLSMIAA
LCWEARQLEVDMAYLEADVEE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like