mRNA_H-elongata_contig49885.12208.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49885.12208.1
Unique NamemRNA_H-elongata_contig49885.12208.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49885.12208.1 vs. uniprot
Match: D8LAZ3_ECTSI (L-type lectin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ3_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 8.870e-19
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 VDSKNIGVWRKCISARLDDMPEGWLDKAGVAITAKTGKEVSNNHDVMSLEV 153
            VD++N+GVWRKCI+ ++ DMPEGWLD+AGV +  +T +EVSNNHDVMSLEV
Sbjct:  248 VDARNVGVWRKCITTKVTDMPEGWLDRAGVIVVGETSREVSNNHDVMSLEV 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49885.12208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAZ3_ECTSI8.870e-1968.63L-type lectin-like domain-containing protein n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49885contigH-elongata_contig49885:614..766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue6e-15
Seed eggNOG ortholog2880.D8LAZ3
EggNOG OGs2EVAS@1,2SXBA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionConcanavalin A-like lectin/glucanase domain
Ec32 orthologEc-27_005860.1
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.6503816-CDS-H-elongata_contig49885:613..7661622930821.6503816-CDS-H-elongata_contig49885:613..766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49885 614..766 -
1691679584.9637527-CDS-H-elongata_contig49885:613..7661691679584.9637527-CDS-H-elongata_contig49885:613..766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49885 614..766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49885.12208.1prot_H-elongata_contig49885.12208.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49885 614..766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49885.12208.1

>prot_H-elongata_contig49885.12208.1 ID=prot_H-elongata_contig49885.12208.1|Name=mRNA_H-elongata_contig49885.12208.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
VDSKNIGVWRKCISARLDDMPEGWLDKAGVAITAKTGKEVSNNHDVMSLE
V
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mRNA from alignment at H-elongata_contig49885:614..766-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49885.12208.1 ID=mRNA_H-elongata_contig49885.12208.1|Name=mRNA_H-elongata_contig49885.12208.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig49885:614..766- (Himanthalia elongata Himel1 dioecious)
GTGGACTCGAAGAACATCGGGGTCTGGAGAAAGTGCATCTCCGCGCGGTT
GGACGACATGCCTGAGGGGTGGCTGGACAAAGCTGGGGTTGCCATCACCG
CGAAGACGGGAAAAGAGGTGTCGAACAATCATGACGTCATGAGCTTGGAG
GTG
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Coding sequence (CDS) from alignment at H-elongata_contig49885:614..766-

>mRNA_H-elongata_contig49885.12208.1 ID=mRNA_H-elongata_contig49885.12208.1|Name=mRNA_H-elongata_contig49885.12208.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig49885:614..766- (Himanthalia elongata Himel1 dioecious)
GTGGACTCGAAGAACATCGGGGTCTGGAGAAAGTGCATCTCCGCGCGGTT
GGACGACATGCCTGAGGGGTGGCTGGACAAAGCTGGGGTTGCCATCACCG
CGAAGACGGGAAAAGAGGTGTCGAACAATCATGACGTCATGAGCTTGGAG
GTGGTGGACTCGAAGAACATCGGGGTCTGGAGAAAGTGCATCTCCGCGCG
GTTGGACGACATGCCTGAGGGGTGGCTGGACAAAGCTGGGGTTGCCATCA
CCGCGAAGACGGGAAAAGAGGTGTCGAACAATCATGACGTCATGAGCTTG
GAGGTG
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