prot_H-elongata_contig49885.12208.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49885.12208.1
Unique Nameprot_H-elongata_contig49885.12208.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length51
Homology
[Close]
BLAST of mRNA_H-elongata_contig49885.12208.1 vs. uniprot
Match: D8LAZ3_ECTSI (L-type lectin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ3_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 8.870e-19
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 0 
Query:    1 VDSKNIGVWRKCISARLDDMPEGWLDKAGVAITAKTGKEVSNNHDVMSLEV 51
            VD++N+GVWRKCI+ ++ DMPEGWLD+AGV +  +T +EVSNNHDVMSLEV
Sbjct:  248 VDARNVGVWRKCITTKVTDMPEGWLDRAGVIVVGETSREVSNNHDVMSLEV 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49885.12208.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAZ3_ECTSI8.870e-1968.63L-type lectin-like domain-containing protein n=2 T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.120.200coord: 1..51
e-value: 3.0E-6
score: 28.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49885contigH-elongata_contig49885:614..766 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49885.12208.1mRNA_H-elongata_contig49885.12208.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49885 614..766 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49885.12208.1 ID=prot_H-elongata_contig49885.12208.1|Name=mRNA_H-elongata_contig49885.12208.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
VDSKNIGVWRKCISARLDDMPEGWLDKAGVAITAKTGKEVSNNHDVMSLE
V
back to top