mRNA_H-elongata_contig49868.12207.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49868.12207.1
Unique NamemRNA_H-elongata_contig49868.12207.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49868.12207.1 vs. uniprot
Match: D7G1M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M6_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 2.600e-109
Identity = 209/315 (66.35%), Postives = 234/315 (74.29%), Query Frame = 1 
Query:    1 LSSKVNNTLPWALLLHLCFTCWFLGTESLKSEVITESLSSHAAHYNNDIIASYEAKYGILATRILRTNVFPLVVLTAGVFVWCTLEFVGKFFPLLAILGRGLQCVAEVFTGKTRTIAVMRPGKPNRSRWTSEVAAYTDVYFQYIPKNSDLTTAEKLEGWMVSHLADKSV----GWEMDEEAPPAGRGDAKLSWEVIRDNSVFTYRIDLHRFLS--ITILQEEERLYKEDLAAESEESSSSXDPXXXXXXXXXXXXXXXXXXXXQKGSSAVASKKKTEPEKKAFNPFDDFEAGAVD-EEAVETADYNPFADFVQGV 924
            L  +VNNTLPWALLLHLCFTCWFLGTESLKSEVITES+S    +   D+IASYE  YGIL +RI+RTNVFPL +LT GV VWC LEF+  +FPL  ILG+G + V    TGK RT+ VMRPGK  RSRWTSEVAAYTDVY+QYIPKN DLTTAEKLEGWMVSHLADKSV    GW+MDEE  P GRGDAK SWEVIRDNS+FTYRIDL    +  +  LQEEERLYKEDL AES++S +S   XXXXXXXXXXXXXXXXXXXX                  AFNPFDD   G  D ++A +   YNPFADF+ G+
Sbjct:  496 LQQQVNNTLPWALLLHLCFTCWFLGTESLKSEVITESISQVKPY--EDVIASYEEGYGILVSRIIRTNVFPLFLLTLGVLVWCVLEFLNGYFPLFVILGKGFRFVLGSCTGKKRTLEVMRPGKKIRSRWTSEVAAYTDVYYQYIPKNGDLTTAEKLEGWMVSHLADKSVVKKKGWDMDEEEAPPGRGDAKFSWEVIRDNSIFTYRIDLVPAYAEVMAALQEEERLYKEDLEAESDDSDASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA----AFNPFDDAGNGGADGDDAGDDDGYNPFADFMDGM 804
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49868.12207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1M6_ECTSI2.600e-10966.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49868contigH-elongata_contig49868:1395..3751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score345.1
Seed ortholog evalue3.3e-92
Seed eggNOG ortholog2880.D7G1M6
KEGG rclassRC02795
KEGG koko:K03015
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
EggNOG OGs28SCF@1,2QZ1Z@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03019,ko03021,ko03400
Hectar predicted targeting categorysignal peptide
Exons6
Model size924
Cds size924
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49868.12207.1prot_H-elongata_contig49868.12207.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49868 1395..3751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.522827-CDS-H-elongata_contig49868:1394..15621622930821.522827-CDS-H-elongata_contig49868:1394..1562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49868 1395..1562 -
1691679584.8983078-CDS-H-elongata_contig49868:1394..15621691679584.8983078-CDS-H-elongata_contig49868:1394..1562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49868 1395..1562 -
1622930821.5345001-CDS-H-elongata_contig49868:1812..19561622930821.5345001-CDS-H-elongata_contig49868:1812..1956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49868 1813..1956 -
1691679584.910086-CDS-H-elongata_contig49868:1812..19561691679584.910086-CDS-H-elongata_contig49868:1812..1956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49868 1813..1956 -
1622930821.5479276-CDS-H-elongata_contig49868:2116..22211622930821.5479276-CDS-H-elongata_contig49868:2116..2221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49868 2117..2221 -
1691679584.9209282-CDS-H-elongata_contig49868:2116..22211691679584.9209282-CDS-H-elongata_contig49868:2116..2221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49868 2117..2221 -
1622930821.5641153-CDS-H-elongata_contig49868:2453..25771622930821.5641153-CDS-H-elongata_contig49868:2453..2577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49868 2454..2577 -
1691679584.9303584-CDS-H-elongata_contig49868:2453..25771691679584.9303584-CDS-H-elongata_contig49868:2453..2577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49868 2454..2577 -
1622930821.580181-CDS-H-elongata_contig49868:2821..30241622930821.580181-CDS-H-elongata_contig49868:2821..3024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49868 2822..3024 -
1691679584.9420364-CDS-H-elongata_contig49868:2821..30241691679584.9420364-CDS-H-elongata_contig49868:2821..3024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49868 2822..3024 -
1622930821.5944626-CDS-H-elongata_contig49868:3571..37511622930821.5944626-CDS-H-elongata_contig49868:3571..3751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49868 3572..3751 -
1691679584.9529352-CDS-H-elongata_contig49868:3571..37511691679584.9529352-CDS-H-elongata_contig49868:3571..3751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49868 3572..3751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49868.12207.1

>prot_H-elongata_contig49868.12207.1 ID=prot_H-elongata_contig49868.12207.1|Name=mRNA_H-elongata_contig49868.12207.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=308bp
LSSKVNNTLPWALLLHLCFTCWFLGTESLKSEVITESLSSHAAHYNNDII
ASYEAKYGILATRILRTNVFPLVVLTAGVFVWCTLEFVGKFFPLLAILGR
GLQCVAEVFTGKTRTIAVMRPGKPNRSRWTSEVAAYTDVYFQYIPKNSDL
TTAEKLEGWMVSHLADKSVGWEMDEEAPPAGRGDAKLSWEVIRDNSVFTY
RIDLHRFLSITILQEEERLYKEDLAAESEESSSSSDPSGEKDGDVDEDGD
ETEDDGEQKGSSAVASKKKTEPEKKAFNPFDDFEAGAVDEEAVETADYNP
FADFVQGV
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mRNA from alignment at H-elongata_contig49868:1395..3751-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49868.12207.1 ID=mRNA_H-elongata_contig49868.12207.1|Name=mRNA_H-elongata_contig49868.12207.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2357bp|location=Sequence derived from alignment at H-elongata_contig49868:1395..3751- (Himanthalia elongata Himel1 dioecious)
CTTTCTTCCAAGGTAAACAACACGCTGCCATGGGCGCTTCTCCTGCACTT
ATGCTTCACCTGCTGGTTTCTTGGAACAGAATCGCTGAAGAGCGAGGTCA
TCACGGAGTCACTCTCTTCCCATGCTGCCCACTACAACAATGATATTATT
GCGTCTTACGAAGCCAAGTATGGCATTCTGGTAAGTGGGAGGCCGGCAAG
AGAGATTTGAGGTAGGAGTAGTAGCATTCTGATATTTTTTCTCCCATTTA
TTGTGGACACCAGAAGACTTGTGGACGCACTGGCCGGGGCTACACACAGG
AGGAAGGTCACACCGGATTTCTCCACCTTCCTTCTGTGGTACTTGTCTTA
ATTTTTAAGAAGGATTCAGGAGTCCCTTTCACTCGTCGACCGTGAAGTCG
AATATTATTGTGTACGGACGAAATTATCGTTCTCCACTACTTGTTGGGTG
TTGGGTGAGATAAAAACCCAGTTCGTCGTGTGATTGCACCGAGATTCGAA
CTTACGTCCCAACGTCAAAAGGTTTCGAGGTTACCAATTCAACCACGGGG
CGACCGGTCTCCGTAGATATTTAACGACTTCAAAGTTACGAGTTAGATAA
GGCGGCAGGGTGCAAAGCATTTTTACTATTGATGTAGTATGTGGTTTATG
TATACAAAGTACTTTTCAGCACAGCGTCAGACAACAAAATGTCCCTTCCT
CCTACTTTTCATCTACCTTTTGCACAGGCAACACGGATCCTTCGAACAAA
CGTTTTCCCTTTGGTTGTCCTGACGGCGGGGGTGTTTGTGTGGTGCACGC
TGGAGTTCGTCGGCAAGTTTTTCCCTTTACTAGCGATTCTGGGCAGGGGC
CTTCAGTGTGTGGCTGAGGTGTTCACAGGAAAGACAAGAACTATCGCTGT
TATGCGGCCTGGAAAGCCGAACAGAAGCAGGTAGGTGTGCTCGTTAAGAG
CTATCAGCTTTGGCGGGAATAATCTTGGTCGTTCATTATGCTTGCTGTGG
GTTTTGTGAATCAGATATAATTTATCAAACCACAACGTATAAATTTCTCA
TTCATTCCACCCGTAGATTATAAGTCTAGGAATTATGGCATGCAGCCATA
CGGCGTCCCATTATCTGCTTCTTTCTTCAGGAACGAACTTAACCGTGTTC
ATCCAATTCACATGCGATTTGTAGATGGACATCGGAGGTGGCCGCTTACA
CAGACGTGTACTTTCAGTACATCCCAAAGAACAGCGACTTAACGACGGCA
GAGAAACTCGAAGGCTGGATGGTCAGCCACCTGGCGGATAAATCCGTGGT
CAAGAAAAAGGCGAGATCAATCAAGAACGCCTGGTAGAAGCTCGAGTTTC
CTTTTTTTTGTCGTTTGTATAGTTATATCGACCACCCATAAACGAAGTTG
GCAATCACTACATACAGTAGTAGTAGTAGTGGGTGCTTCGTAATTGATAC
TATTGTGTTGAAGGGTCCCCTCAGACTACCCCGCACGGCTAAATCCAACA
CGAACTTGCTCAATAACACTTTGTGGACAGGGGTGGGAAATGGACGAAGA
GGCGCCCCCGGCAGGGCGGGGGGATGCTAAGTTATCCTGGGAGGTTATCA
GAGATAACTCAGTCTTCACATACCGCATCGACCTCGTGCCAGCCTATGCC
GAGATCATGACTGCGCTTAAGGCGAGCCATATATAACGGCAAAATATATA
AAAACGAAAACGAGCGTTGTACCTTAGCCACCGTACAATTTGCGACCCTC
TCTTCTACTATTACTAGTAACTACCGCGCATGTGTGGGATAACAGCATCG
ATTTTTATCAATAACCATCCTACAGGAAGAAGAACGGCTATACAAAGAGG
ACTTGGCGGCGGAGAGCGAAGAAAGTAGTAGTAGTAGCGACCCCAGCGGG
GAAAAGGATGGTGATGTGGATGAGGATGGAGACGAAACGGTACCACGTGG
TGTCCGACTTGCTATACATCCACGATGATGTAGGATAGACATTAAAAGCG
GAACATTTATATTATTTCTAGTAGTCTAGAAGTTCAAAGCACGGAGCTGG
TACAATGGGTATATCATACGCGAAATACTGACTCATTCGACGAAACTCTA
GACTACTATTATTTATTGCACGAGCCACGAATGGTTTTATTTTACGGTGA
CATGAATGCGCATCGACGCCCCTGTCAACAACAACGTAGGAGGATGACGG
GGAGCAGAAAGGATCATCTGCCGTGGCAAGCAAGAAAAAGACGGAGCCCG
AGAAGAAGGCCTTCAACCCTTTTGATGATTTCGAAGCTGGTGCGGTGGAT
GAGGAAGCAGTGGAAACTGCTGACTACAACCCGTTCGCAGATTTCGTGCA
AGGGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig49868:1395..3751-

>mRNA_H-elongata_contig49868.12207.1 ID=mRNA_H-elongata_contig49868.12207.1|Name=mRNA_H-elongata_contig49868.12207.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1848bp|location=Sequence derived from alignment at H-elongata_contig49868:1395..3751- (Himanthalia elongata Himel1 dioecious)
CTTTCTTCCAAGGTAAACAACACGCTGCCATGGGCGCTTCTCCTGCACTT
ATGCTTCACCTGCTGGTTTCTTGGAACAGAATCGCTGAAGAGCGAGGTCA
TCACGGAGTCACTCTCTTCCCATGCTGCCCACTACAACAATGATATTATT
GCGTCTTACGAAGCCAAGTATGGCATTCTGCTTTCTTCCAAGGTAAACAA
CACGCTGCCATGGGCGCTTCTCCTGCACTTATGCTTCACCTGCTGGTTTC
TTGGAACAGAATCGCTGAAGAGCGAGGTCATCACGGAGTCACTCTCTTCC
CATGCTGCCCACTACAACAATGATATTATTGCGTCTTACGAAGCCAAGTA
TGGCATTCTGGCAACACGGATCCTTCGAACAAACGTTTTCCCTTTGGTTG
TCCTGACGGCGGGGGTGTTTGTGTGGTGCACGCTGGAGTTCGTCGGCAAG
TTTTTCCCTTTACTAGCGATTCTGGGCAGGGGCCTTCAGTGTGTGGCTGA
GGTGTTCACAGGAAAGACAAGAACTATCGCTGTTATGCGGCCTGGAAAGC
CGAACAGAAGCAGGCAACACGGATCCTTCGAACAAACGTTTTCCCTTTGG
TTGTCCTGACGGCGGGGGTGTTTGTGTGGTGCACGCTGGAGTTCGTCGGC
AAGTTTTTCCCTTTACTAGCGATTCTGGGCAGGGGCCTTCAGTGTGTGGC
TGAGGTGTTCACAGGAAAGACAAGAACTATCGCTGTTATGCGGCCTGGAA
AGCCGAACAGAAGCAGATGGACATCGGAGGTGGCCGCTTACACAGACGTG
TACTTTCAGTACATCCCAAAGAACAGCGACTTAACGACGGCAGAGAAACT
CGAAGGCTGGATGGTCAGCCACCTGGCGGATAAATCCGTGATGGACATCG
GAGGTGGCCGCTTACACAGACGTGTACTTTCAGTACATCCCAAAGAACAG
CGACTTAACGACGGCAGAGAAACTCGAAGGCTGGATGGTCAGCCACCTGG
CGGATAAATCCGTGGGGTGGGAAATGGACGAAGAGGCGCCCCCGGCAGGG
CGGGGGGATGCTAAGTTATCCTGGGAGGTTATCAGAGATAACTCAGTCTT
CACATACCGCATCGACCTCGGGTGGGAAATGGACGAAGAGGCGCCCCCGG
CAGGGCGGGGGGATGCTAAGTTATCCTGGGAGGTTATCAGAGATAACTCA
GTCTTCACATACCGCATCGACCTCCATCGATTTTTATCAATAACCATCCT
ACAGGAAGAAGAACGGCTATACAAAGAGGACTTGGCGGCGGAGAGCGAAG
AAAGTAGTAGTAGTAGCGACCCCAGCGGGGAAAAGGATGGTGATGTGGAT
GAGGATGGAGACGAAACGCATCGATTTTTATCAATAACCATCCTACAGGA
AGAAGAACGGCTATACAAAGAGGACTTGGCGGCGGAGAGCGAAGAAAGTA
GTAGTAGTAGCGACCCCAGCGGGGAAAAGGATGGTGATGTGGATGAGGAT
GGAGACGAAACGGAGGATGACGGGGAGCAGAAAGGATCATCTGCCGTGGC
AAGCAAGAAAAAGACGGAGCCCGAGAAGAAGGCCTTCAACCCTTTTGATG
ATTTCGAAGCTGGTGCGGTGGATGAGGAAGCAGTGGAAACTGCTGACTAC
AACCCGTTCGCAGATTTCGTGCAAGGGGTGGAGGATGACGGGGAGCAGAA
AGGATCATCTGCCGTGGCAAGCAAGAAAAAGACGGAGCCCGAGAAGAAGG
CCTTCAACCCTTTTGATGATTTCGAAGCTGGTGCGGTGGATGAGGAAGCA
GTGGAAACTGCTGACTACAACCCGTTCGCAGATTTCGTGCAAGGGGTG
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