prot_H-elongata_contig49868.12207.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49868.12207.1
Unique Nameprot_H-elongata_contig49868.12207.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length308
Homology
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BLAST of mRNA_H-elongata_contig49868.12207.1 vs. uniprot
Match: D7G1M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M6_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 2.600e-109
Identity = 209/315 (66.35%), Postives = 234/315 (74.29%), Query Frame = 0 
Query:    1 LSSKVNNTLPWALLLHLCFTCWFLGTESLKSEVITESLSSHAAHYNNDIIASYEAKYGILATRILRTNVFPLVVLTAGVFVWCTLEFVGKFFPLLAILGRGLQCVAEVFTGKTRTIAVMRPGKPNRSRWTSEVAAYTDVYFQYIPKNSDLTTAEKLEGWMVSHLADKSV----GWEMDEEAPPAGRGDAKLSWEVIRDNSVFTYRIDLHRFLS--ITILQEEERLYKEDLAAESEESSSSXDPXXXXXXXXXXXXXXXXXXXXQKGSSAVASKKKTEPEKKAFNPFDDFEAGAVD-EEAVETADYNPFADFVQGV 308
            L  +VNNTLPWALLLHLCFTCWFLGTESLKSEVITES+S    +   D+IASYE  YGIL +RI+RTNVFPL +LT GV VWC LEF+  +FPL  ILG+G + V    TGK RT+ VMRPGK  RSRWTSEVAAYTDVY+QYIPKN DLTTAEKLEGWMVSHLADKSV    GW+MDEE  P GRGDAK SWEVIRDNS+FTYRIDL    +  +  LQEEERLYKEDL AES++S +S   XXXXXXXXXXXXXXXXXXXX                  AFNPFDD   G  D ++A +   YNPFADF+ G+
Sbjct:  496 LQQQVNNTLPWALLLHLCFTCWFLGTESLKSEVITESISQVKPY--EDVIASYEEGYGILVSRIIRTNVFPLFLLTLGVLVWCVLEFLNGYFPLFVILGKGFRFVLGSCTGKKRTLEVMRPGKKIRSRWTSEVAAYTDVYYQYIPKNGDLTTAEKLEGWMVSHLADKSVVKKKGWDMDEEEAPPGRGDAKFSWEVIRDNSIFTYRIDLVPAYAEVMAALQEEERLYKEDLEAESDDSDASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA----AFNPFDDAGNGGADGDDAGDDDGYNPFADFMDGM 804
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49868.12207.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1M6_ECTSI2.600e-10966.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..308
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..24
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.719
NoneNo IPR availableTMHMMTMhelixcoord: 69..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49868contigH-elongata_contig49868:1395..3751 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49868.12207.1mRNA_H-elongata_contig49868.12207.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49868 1395..3751 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49868.12207.1 ID=prot_H-elongata_contig49868.12207.1|Name=mRNA_H-elongata_contig49868.12207.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=308bp
LSSKVNNTLPWALLLHLCFTCWFLGTESLKSEVITESLSSHAAHYNNDII
ASYEAKYGILATRILRTNVFPLVVLTAGVFVWCTLEFVGKFFPLLAILGR
GLQCVAEVFTGKTRTIAVMRPGKPNRSRWTSEVAAYTDVYFQYIPKNSDL
TTAEKLEGWMVSHLADKSVGWEMDEEAPPAGRGDAKLSWEVIRDNSVFTY
RIDLHRFLSITILQEEERLYKEDLAAESEESSSSSDPSGEKDGDVDEDGD
ETEDDGEQKGSSAVASKKKTEPEKKAFNPFDDFEAGAVDEEAVETADYNP
FADFVQGV
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