mRNA_H-elongata_contig49784.12194.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE) HSP 1 Score: 317 bits (811), Expect = 2.130e-97 Identity = 157/208 (75.48%), Postives = 181/208 (87.02%), Query Frame = 2
Query: 2 ALMDEILRELEAEGHHFSVTNKAPVATDFPVLVLPSGVIVGDPVKANQDSPCLKAAVDAIRMQAEANGNAIGLDIEWEISSAGAPVNPPATIQLAAGKTVVIFHVLHGQRSVPADLPDQLANLLEDEKLTKTGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGLRRGLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQKK 625
AL++EI EL +EGH FSVTN P+A++ PVL LP V++G+PVKANQDSPCLKAAVDAIRMQAEAN + LDIEWEIS+AGAP NPPATIQLAAGK VVIFHVLHGQRSVPA+LPD L +LLED KLTKTGVGIKGDCTRL++ YGVEVA A+DLRSLAVERKVE+GLRRGLA+LCVHLLG +LPK+ TVR+S+WN LS +QK+
Sbjct: 184 ALLNEIFEELASEGHQFSVTNSVPIASECPVLHLPPDVVLGEPVKANQDSPCLKAAVDAIRMQAEANNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQKR 391
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A6H5KFL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL9_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 1.390e-18 Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 2
Query: 2 ALMDEILRELEAEGHHFSVTNKAPVATDFPVLVLPSGVIVGDPVKANQDSPCLKAAVDAIRMQA 193
AL+++I EL +EGH FSVTN P+A++ PVL LP V++G+PVKANQDSPCLKAAVD RMQA
Sbjct: 205 ALLNDIFEELASEGHQFSVTNSVPIASECPVLQLPPDVVLGEPVKANQDSPCLKAAVDTTRMQA 268
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A426YFX4_ENSVE (PH domain-containing protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426YFX4_ENSVE) HSP 1 Score: 88.2 bits (217), Expect = 4.550e-18 Identity = 55/137 (40.15%), Postives = 77/137 (56.20%), Query Frame = 2
Query: 212 IGLDIEWEISSAGAPVNPPATIQLAAGKTVVIFHVLHGQRSVPADLPDQLANLLEDEKLTKTGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGLRR-GLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQ 619
+GLD EW S + NP A +QL G+ ++F +LH VPA L D LA D++ T GVGI GD RL + +++A A+DLR+LA +R GL+ GLA L ++G + K V MS W+ L+ EQ
Sbjct: 54 VGLDAEWRPSFSPTQ-NPVAVVQLCVGRRCLLFLILHADY-VPASLSDFLA----DDRFTFVGVGIDGDADRLDDEQNLQIANAVDLRTLAADRMGRRGLKNAGLALLAAQVMGVNVWKPKRVTMSHWDRRYLTYEQ 184
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A4S8J3Z7_MUSBA (PH domain-containing protein n=2 Tax=Musa TaxID=4640 RepID=A0A4S8J3Z7_MUSBA) HSP 1 Score: 85.5 bits (210), Expect = 4.790e-17 Identity = 50/137 (36.50%), Postives = 75/137 (54.74%), Query Frame = 2
Query: 212 IGLDIEWEISSAGAPVNPPATIQLAAGKTVVIFHVLHGQRSVPADLPDQLANLLEDEKLTKTGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGLRR-GLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQ 619
+GLD EW S + NP A +QL G+ ++F +LH +P+ LA+ L D + T GVG+ GD RL +++A A+DLR+LA ++ GL+ GLA L ++G + K V MS W+ L+ EQ
Sbjct: 54 VGLDAEWRPSFSPTQ-NPVAVLQLCVGRRCLLFLLLHADY-----VPNSLADFLADHRFTFVGVGVDGDAERLDEEQNLQIANAVDLRTLAADKMGRRGLKNAGLARLAAEVMGLDVWKPKRVTMSHWDRRYLTYEQ 184
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A811QX23_9POAL (Hypothetical protein n=2 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811QX23_9POAL) HSP 1 Score: 85.5 bits (210), Expect = 7.380e-17 Identity = 48/137 (35.04%), Postives = 71/137 (51.82%), Query Frame = 2
Query: 212 IGLDIEWEISSAGAPVNPPATIQLAAGKTVVIFHVLHGQRSVPADLPDQLANLLEDEKLTKTGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGL-RRGLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQ 619
+GLD+EW + V P A +Q+ G +IF +LH +P+ L L D++ T GVG+ D +L +G+EV RA+DLRSLA + L GL L ++G ++ K VR S W+ LS +Q
Sbjct: 53 VGLDVEWHPCTYRGDVQPVAVLQICVGHRCLIFQILHADY-----IPESLFGFLADDRFTFVGVGVHDDAAKLRLDHGLEVGRAVDLRSLAANTLKQPALGTAGLQALVSEVMGVKMEKPQHVRRSAWDARNLSSDQ 184
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 1.580e-16 Identity = 59/160 (36.88%), Postives = 82/160 (51.25%), Query Frame = 2
Query: 146 DSPCLKAAVDAIRMQAEANGNAIGLDIEWEISSAGAPVNPPATIQLAAGK-TVVIFHVLHG-QRSVPADLPDQLANLLEDEKLTKTGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGLRRGLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQ 619
D + AV + G+ +G+D EWE G+ T+QLA T +FH+ G +R+ P+ L LL D +TK GV +KGD +RL YGVE +DLRS A V++ R LA + LG L K +VR SRW+ A+L+Q Q
Sbjct: 68 DEKAINLAVMEFVEGCKQQGHVLGMDCEWEPPFDGSSEGAVCTLQLALPDGTAYLFHLQRGTRRTRPSTFNRSLKVLLNDPTITKVGVAVKGDGSRLQRDYGVETCGMVDLRSYARTCWVDLPCR-SLAGMVATALGKSLSKNPSVRFSRWSQAELTQNQ 226
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 3.630e-16 Identity = 58/156 (37.18%), Postives = 85/156 (54.49%), Query Frame = 2
Query: 167 AVDAIRMQAEANGNAIGLDIEWEISSAGAPVNPPATIQLAAGK-TVVIFHVLH---GQRSVPADLPDQLANLLEDEKLTK-TGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGLRRGLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQ 619
AV + + G+ +GLD EWE + GA NP +T+QL+ T FH LH + + + +P L +LLE+ + GV + D + L YGV+VA ID+R+ A E VE R LA + L+G LPK+ T+R+SRW+ L+ EQ
Sbjct: 140 AVAELAKGCQDQGDVLGLDCEWEPALGGATPNPVSTLQLSLPDGTAYCFH-LHRRTNRATATSTIPKVLQSLLENVPSQRYVGVNVNSDASLLERYYGVKVANMIDVRTHARECWVETS-SRSLAGMASSLVGKALPKDPTIRLSRWSNPSLTDEQ 293
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A484MTK5_9ASTE (3'-5' exonuclease domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484MTK5_9ASTE) HSP 1 Score: 79.7 bits (195), Expect = 7.820e-15 Identity = 51/137 (37.23%), Postives = 69/137 (50.36%), Query Frame = 2
Query: 212 IGLDIEWEISSAGAPVNPPATIQLAAGKTVVIFHVLHGQRSVPADLPDQLANLLEDEKLTKTGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGLRR-GLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQ 619
+GLD+EW NP AT+QL G +IF +L+ + +PD L L D T GVGI D L Y +EVA A+DLR++A + L R GL +L V +GA + K V +S W L+ EQ
Sbjct: 56 VGLDVEWRPIRYRGESNPVATLQLCVGHRCLIFQLLYCSQ-----IPDALQRFLSDSNYTFVGVGIHTDLELLVQDYELEVANAVDLRTIAANEFNDRSLERVGLKHLAVTYMGAEMDKPRRVTLSDWARDSLTLEQ 187
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A328DVM0_9ASTE (3'-5' exonuclease domain-containing protein n=2 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328DVM0_9ASTE) HSP 1 Score: 79.0 bits (193), Expect = 2.980e-14 Identity = 50/137 (36.50%), Postives = 71/137 (51.82%), Query Frame = 2
Query: 212 IGLDIEWEISSAGAPVNPPATIQLAAGKTVVIFHVLHGQRSVPADLPDQLANLLEDEKLTKTGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGLRR-GLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQ 619
+GLD+EW + NP AT+QL G +IF L+ + +PD L L D T GVGI D L+ + +EVA A+DLR++A + + L R GL +L V +GA + K V +S W L+ EQ
Sbjct: 56 VGLDVEWRPNRYRGESNPVATLQLCVGHRCLIFQPLYCSQ-----IPDALHRFLSDSNYTFVGVGIHTDLELLAQDHELEVANAVDLRTIAANQFNDRSLERVGLKHLAVTYMGAEMDKPRRVTLSDWARDSLTLEQ 187
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A1E5VPQ2_9POAL (3'-5' exonuclease domain-containing protein n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5VPQ2_9POAL) HSP 1 Score: 77.4 bits (189), Expect = 4.660e-13 Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 2
Query: 263 PPATIQLAAGKTVVIFHVLHGQRSVPADLPDQLANLLEDEKLTKTGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGLR-RGLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQKK 625
P A +QL G+ ++F +L +PD L L D+++T GVG+ D +L YG+EVARA+DLR LAV L GL L ++G ++ K VR+S W+ +LS+ Q K
Sbjct: 252 PVAVLQLCVGRRCLVFQILRADY-----VPDALVGFLADDRITFVGVGVHNDAAKLREGYGLEVARAVDLRRLAVVELGNPALHGAGLQALVWEVMGLQMEKPHHVRVSAWDARRLSKAQLK 368 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49784.12194.1 >prot_H-elongata_contig49784.12194.1 ID=prot_H-elongata_contig49784.12194.1|Name=mRNA_H-elongata_contig49784.12194.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp MDEILRELEAEGHHFSVTNKAPVATDFPVLVLPSGVIVGDPVKANQDSPCback to top mRNA from alignment at H-elongata_contig49784:3123..3750+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49784.12194.1 ID=mRNA_H-elongata_contig49784.12194.1|Name=mRNA_H-elongata_contig49784.12194.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=628bp|location=Sequence derived from alignment at H-elongata_contig49784:3123..3750+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49784:3123..3750+ >mRNA_H-elongata_contig49784.12194.1 ID=mRNA_H-elongata_contig49784.12194.1|Name=mRNA_H-elongata_contig49784.12194.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at H-elongata_contig49784:3123..3750+ (Himanthalia elongata Himel1 dioecious)back to top |