prot_H-elongata_contig49784.12194.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49784.12194.1
Unique Nameprot_H-elongata_contig49784.12194.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length207
Homology
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 3.710e-96
Identity = 155/206 (75.24%), Postives = 179/206 (86.89%), Query Frame = 0
Query:    1 MDEILRELEAEGHHFSVTNKAPVATDFPVLVLPSGVIVGDPVKANQDSPCLKAAVDAIRMQAEANGNAIGLDIEWEISSAGAPVNPPATIQLAAGKTVVIFHVLHGQRSVPADLPDQLANLLEDEKLTKTGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGLRRGLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQKK 206
            ++EI  EL +EGH FSVTN  P+A++ PVL LP  V++G+PVKANQDSPCLKAAVDAIRMQAEAN   + LDIEWEIS+AGAP NPPATIQLAAGK VVIFHVLHGQRSVPA+LPD L +LLED KLTKTGVGIKGDCTRL++ YGVEVA A+DLRSLAVERKVE+GLRRGLA+LCVHLLG +LPK+ TVR+S+WN   LS +QK+
Sbjct:  186 LNEIFEELASEGHQFSVTNSVPIASECPVLHLPPDVVLGEPVKANQDSPCLKAAVDAIRMQAEANNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQKR 391          
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A426YFX4_ENSVE (PH domain-containing protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426YFX4_ENSVE)

HSP 1 Score: 88.2 bits (217), Expect = 4.320e-18
Identity = 55/137 (40.15%), Postives = 77/137 (56.20%), Query Frame = 0
Query:   69 IGLDIEWEISSAGAPVNPPATIQLAAGKTVVIFHVLHGQRSVPADLPDQLANLLEDEKLTKTGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGLRR-GLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQ 204
            +GLD EW  S +    NP A +QL  G+  ++F +LH    VPA L D LA    D++ T  GVGI GD  RL +   +++A A+DLR+LA +R    GL+  GLA L   ++G  + K   V MS W+   L+ EQ
Sbjct:   54 VGLDAEWRPSFSPTQ-NPVAVVQLCVGRRCLLFLILHADY-VPASLSDFLA----DDRFTFVGVGIDGDADRLDDEQNLQIANAVDLRTLAADRMGRRGLKNAGLALLAAQVMGVNVWKPKRVTMSHWDRRYLTYEQ 184          
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A6H5KFL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL9_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.610e-17
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = 0
Query:    1 MDEILRELEAEGHHFSVTNKAPVATDFPVLVLPSGVIVGDPVKANQDSPCLKAAVDAIRMQA 62
            +++I  EL +EGH FSVTN  P+A++ PVL LP  V++G+PVKANQDSPCLKAAVD  RMQA
Sbjct:  207 LNDIFEELASEGHQFSVTNSVPIASECPVLQLPPDVVLGEPVKANQDSPCLKAAVDTTRMQA 268          
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A4S8J3Z7_MUSBA (PH domain-containing protein n=2 Tax=Musa TaxID=4640 RepID=A0A4S8J3Z7_MUSBA)

HSP 1 Score: 85.5 bits (210), Expect = 4.550e-17
Identity = 50/137 (36.50%), Postives = 75/137 (54.74%), Query Frame = 0
Query:   69 IGLDIEWEISSAGAPVNPPATIQLAAGKTVVIFHVLHGQRSVPADLPDQLANLLEDEKLTKTGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGLRR-GLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQ 204
            +GLD EW  S +    NP A +QL  G+  ++F +LH        +P+ LA+ L D + T  GVG+ GD  RL     +++A A+DLR+LA ++    GL+  GLA L   ++G  + K   V MS W+   L+ EQ
Sbjct:   54 VGLDAEWRPSFSPTQ-NPVAVLQLCVGRRCLLFLLLHADY-----VPNSLADFLADHRFTFVGVGVDGDAERLDEEQNLQIANAVDLRTLAADKMGRRGLKNAGLARLAAEVMGLDVWKPKRVTMSHWDRRYLTYEQ 184          
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A811QX23_9POAL (Hypothetical protein n=2 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811QX23_9POAL)

HSP 1 Score: 85.5 bits (210), Expect = 7.010e-17
Identity = 48/137 (35.04%), Postives = 71/137 (51.82%), Query Frame = 0
Query:   69 IGLDIEWEISSAGAPVNPPATIQLAAGKTVVIFHVLHGQRSVPADLPDQLANLLEDEKLTKTGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGL-RRGLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQ 204
            +GLD+EW   +    V P A +Q+  G   +IF +LH        +P+ L   L D++ T  GVG+  D  +L   +G+EV RA+DLRSLA     +  L   GL  L   ++G ++ K   VR S W+   LS +Q
Sbjct:   53 VGLDVEWHPCTYRGDVQPVAVLQICVGHRCLIFQILHADY-----IPESLFGFLADDRFTFVGVGVHDDAAKLRLDHGLEVGRAVDLRSLAANTLKQPALGTAGLQALVSEVMGVKMEKPQHVRRSAWDARNLSSDQ 184          
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.500e-16
Identity = 59/160 (36.88%), Postives = 82/160 (51.25%), Query Frame = 0
Query:   47 DSPCLKAAVDAIRMQAEANGNAIGLDIEWEISSAGAPVNPPATIQLAAGK-TVVIFHVLHG-QRSVPADLPDQLANLLEDEKLTKTGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGLRRGLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQ 204
            D   +  AV       +  G+ +G+D EWE    G+      T+QLA    T  +FH+  G +R+ P+     L  LL D  +TK GV +KGD +RL   YGVE    +DLRS A    V++  R  LA +    LG  L K  +VR SRW+ A+L+Q Q
Sbjct:   68 DEKAINLAVMEFVEGCKQQGHVLGMDCEWEPPFDGSSEGAVCTLQLALPDGTAYLFHLQRGTRRTRPSTFNRSLKVLLNDPTITKVGVAVKGDGSRLQRDYGVETCGMVDLRSYARTCWVDLPCR-SLAGMVATALGKSLSKNPSVRFSRWSQAELTQNQ 226          
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.440e-16
Identity = 58/156 (37.18%), Postives = 85/156 (54.49%), Query Frame = 0
Query:   54 AVDAIRMQAEANGNAIGLDIEWEISSAGAPVNPPATIQLAAGK-TVVIFHVLH---GQRSVPADLPDQLANLLEDEKLTK-TGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGLRRGLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQ 204
            AV  +    +  G+ +GLD EWE +  GA  NP +T+QL+    T   FH LH    + +  + +P  L +LLE+    +  GV +  D + L   YGV+VA  ID+R+ A E  VE    R LA +   L+G  LPK+ T+R+SRW+   L+ EQ
Sbjct:  140 AVAELAKGCQDQGDVLGLDCEWEPALGGATPNPVSTLQLSLPDGTAYCFH-LHRRTNRATATSTIPKVLQSLLENVPSQRYVGVNVNSDASLLERYYGVKVANMIDVRTHARECWVETS-SRSLAGMASSLVGKALPKDPTIRLSRWSNPSLTDEQ 293          
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A484MTK5_9ASTE (3'-5' exonuclease domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484MTK5_9ASTE)

HSP 1 Score: 79.7 bits (195), Expect = 7.450e-15
Identity = 51/137 (37.23%), Postives = 69/137 (50.36%), Query Frame = 0
Query:   69 IGLDIEWEISSAGAPVNPPATIQLAAGKTVVIFHVLHGQRSVPADLPDQLANLLEDEKLTKTGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGLRR-GLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQ 204
            +GLD+EW         NP AT+QL  G   +IF +L+  +     +PD L   L D   T  GVGI  D   L   Y +EVA A+DLR++A     +  L R GL +L V  +GA + K   V +S W    L+ EQ
Sbjct:   56 VGLDVEWRPIRYRGESNPVATLQLCVGHRCLIFQLLYCSQ-----IPDALQRFLSDSNYTFVGVGIHTDLELLVQDYELEVANAVDLRTIAANEFNDRSLERVGLKHLAVTYMGAEMDKPRRVTLSDWARDSLTLEQ 187          
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A328DVM0_9ASTE (3'-5' exonuclease domain-containing protein n=2 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328DVM0_9ASTE)

HSP 1 Score: 79.0 bits (193), Expect = 2.840e-14
Identity = 50/137 (36.50%), Postives = 71/137 (51.82%), Query Frame = 0
Query:   69 IGLDIEWEISSAGAPVNPPATIQLAAGKTVVIFHVLHGQRSVPADLPDQLANLLEDEKLTKTGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGLRR-GLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQ 204
            +GLD+EW  +      NP AT+QL  G   +IF  L+  +     +PD L   L D   T  GVGI  D   L+  + +EVA A+DLR++A  +  +  L R GL +L V  +GA + K   V +S W    L+ EQ
Sbjct:   56 VGLDVEWRPNRYRGESNPVATLQLCVGHRCLIFQPLYCSQ-----IPDALHRFLSDSNYTFVGVGIHTDLELLAQDHELEVANAVDLRTIAANQFNDRSLERVGLKHLAVTYMGAEMDKPRRVTLSDWARDSLTLEQ 187          
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Match: A0A1E5VPQ2_9POAL (3'-5' exonuclease domain-containing protein n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5VPQ2_9POAL)

HSP 1 Score: 77.4 bits (189), Expect = 4.440e-13
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 0
Query:   86 PPATIQLAAGKTVVIFHVLHGQRSVPADLPDQLANLLEDEKLTKTGVGIKGDCTRLSNAYGVEVARAIDLRSLAVERKVEVGLR-RGLANLCVHLLGARLPKESTVRMSRWNTAKLSQEQKK 206
            P A +QL  G+  ++F +L         +PD L   L D+++T  GVG+  D  +L   YG+EVARA+DLR LAV       L   GL  L   ++G ++ K   VR+S W+  +LS+ Q K
Sbjct:  252 PVAVLQLCVGRRCLVFQILRADY-----VPDALVGFLADDRITFVGVGVHNDAAKLREGYGLEVARAVDLRRLAVVELGNPALHGAGLQALVWEVMGLQMEKPHHVRVSAWDARRLSKAQLK 368          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49784.12194.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE3.710e-9675.243'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A426YFX4_ENSVE4.320e-1840.15PH domain-containing protein n=2 Tax=Ensete ventri... [more]
A0A6H5KFL9_9PHAE2.610e-1764.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4S8J3Z7_MUSBA4.550e-1736.50PH domain-containing protein n=2 Tax=Musa TaxID=46... [more]
A0A811QX23_9POAL7.010e-1735.04Hypothetical protein n=2 Tax=Miscanthus lutariorip... [more]
A0A6H5JRJ6_9PHAE1.500e-1636.883'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JCK3_9PHAE3.440e-1637.183'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A484MTK5_9ASTE7.450e-1537.233'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A328DVM0_9ASTE2.840e-1436.503'-5' exonuclease domain-containing protein n=2 Ta... [more]
A0A1E5VPQ2_9POAL4.440e-1336.893'-5' exonuclease domain-containing protein n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 56..204
e-value: 3.0E-10
score: 40.1
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 37..206
e-value: 3.7E-35
score: 122.9
NoneNo IPR availablePANTHERPTHR13620:SF65coord: 64..204
NoneNo IPR availablePANTHERPTHR136203-5 EXONUCLEASEcoord: 64..204
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 65..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49784contigH-elongata_contig49784:3130..3750 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49784.12194.1mRNA_H-elongata_contig49784.12194.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49784 3123..3750 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49784.12194.1 ID=prot_H-elongata_contig49784.12194.1|Name=mRNA_H-elongata_contig49784.12194.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp
MDEILRELEAEGHHFSVTNKAPVATDFPVLVLPSGVIVGDPVKANQDSPC
LKAAVDAIRMQAEANGNAIGLDIEWEISSAGAPVNPPATIQLAAGKTVVI
FHVLHGQRSVPADLPDQLANLLEDEKLTKTGVGIKGDCTRLSNAYGVEVA
RAIDLRSLAVERKVEVGLRRGLANLCVHLLGARLPKESTVRMSRWNTAKL
SQEQKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf