mRNA_H-elongata_contig49774.12190.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49774.12190.1
Unique NamemRNA_H-elongata_contig49774.12190.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49774.12190.1 vs. uniprot
Match: D8LLA6_ECTSI (Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLA6_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.410e-37
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 SSQMLYHLAKQEGGFTPKRYFSIDRVFRNETMDATHLCEFHQVEGLVADRNLCLGDLIGVIKTFFYKIGIKQ 216
            SSQML+ +A QEGGFTPKRYFSIDRVFRNETMDATHLCEFHQVEG++ADRNLCLGDLIGVIKTFF+KIGI Q
Sbjct:  340 SSQMLHRIANQEGGFTPKRYFSIDRVFRNETMDATHLCEFHQVEGMIADRNLCLGDLIGVIKTFFHKIGITQ 411
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BLAST of mRNA_H-elongata_contig49774.12190.1 vs. uniprot
Match: A0A7S3LAA3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LAA3_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.760e-35
Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    1 SSQMLYHLAKQEGGFTPKRYFSIDRVFRNETMDATHLCEFHQVEGLVADRNLCLGDLIGVIKTFFYKIGIKQ 216
            SSQMLY LA Q GGFTP RYFSIDRVFRNETMDATHLCEFHQVEGLVAD +L LGDLIG I+TFF KIGI Q
Sbjct:   25 SSQMLYKLANQPGGFTPARYFSIDRVFRNETMDATHLCEFHQVEGLVADYDLSLGDLIGTIETFFNKIGITQ 96
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BLAST of mRNA_H-elongata_contig49774.12190.1 vs. uniprot
Match: A0A7S1FLS1_9STRA (Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FLS1_9STRA)

HSP 1 Score: 128 bits (321), Expect = 3.690e-35
Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    1 SSQMLYHLAKQEGGFTPKRYFSIDRVFRNETMDATHLCEFHQVEGLVADRNLCLGDLIGVIKTFFYKIGIKQ 216
            SSQMLY LA QEGGF P+RYFSIDRVFRNETMDATHLCEFHQVEGLVAD NL LGDLIG I+TFF KIGI Q
Sbjct:  117 SSQMLYKLANQEGGFKPQRYFSIDRVFRNETMDATHLCEFHQVEGLVADYNLSLGDLIGTIETFFNKIGITQ 188
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BLAST of mRNA_H-elongata_contig49774.12190.1 vs. uniprot
Match: A0A7S2Y5I1_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5I1_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.750e-34
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    1 SSQMLYHLAKQEGGFTPKRYFSIDRVFRNETMDATHLCEFHQVEGLVADRNLCLGDLIGVIKTFFYKIGIKQ 216
            SSQMLY LA QEGGF P+RYFSIDRVFRNETMDATHLCEFHQVEGLVAD +L LGDLIG I+TFF KIGI Q
Sbjct:   74 SSQMLYKLANQEGGFQPQRYFSIDRVFRNETMDATHLCEFHQVEGLVADYDLSLGDLIGTIETFFKKIGITQ 145
[Close]
BLAST of mRNA_H-elongata_contig49774.12190.1 vs. uniprot
Match: A0A812V904_SYMMI (Phenylalanine--tRNA ligase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V904_SYMMI)

HSP 1 Score: 127 bits (318), Expect = 2.120e-34
Identity = 60/72 (83.33%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:    1 SSQMLYHLAKQEGGFTPKRYFSIDRVFRNETMDATHLCEFHQVEGLVADRNLCLGDLIGVIKTFFYKIGIKQ 216
            S+QML+ LA QEGGFTP++YFSIDRVFRNETMDATHLCEFHQVEGLVADRNL LG LIG I+TFF KIGI Q
Sbjct:  118 SAQMLHRLANQEGGFTPQKYFSIDRVFRNETMDATHLCEFHQVEGLVADRNLTLGHLIGTIRTFFEKIGITQ 189
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BLAST of mRNA_H-elongata_contig49774.12190.1 vs. uniprot
Match: A0A6V2DUX8_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2DUX8_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.920e-34
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:    1 SSQMLYHLAKQEGGFTPKRYFSIDRVFRNETMDATHLCEFHQVEGLVADRNLCLGDLIGVIKTFFYKIGIKQ 216
            SSQMLY LA QEGGFTP+RYFSIDRVFRNETMDATHLCEFHQVEGLVAD NL LGDLIG I+TFF KIGI Q
Sbjct:  337 SSQMLYKLANQEGGFTPQRYFSIDRVFRNETMDATHLCEFHQVEGLVADYNLSLGDLIGTIETFFKKIGITQ 408
[Close]
BLAST of mRNA_H-elongata_contig49774.12190.1 vs. uniprot
Match: A0A7S2XV42_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S2XV42_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.260e-33
Identity = 60/72 (83.33%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:    1 SSQMLYHLAKQEGGFTPKRYFSIDRVFRNETMDATHLCEFHQVEGLVADRNLCLGDLIGVIKTFFYKIGIKQ 216
            SSQMLY LA Q+GGFTP+RYFSIDRVFRNETMDATHLCEFHQVEG+VAD +L LGDLIG I+TFF KIGI Q
Sbjct:  166 SSQMLYKLANQKGGFTPQRYFSIDRVFRNETMDATHLCEFHQVEGMVADYDLSLGDLIGTIETFFNKIGITQ 237
[Close]
BLAST of mRNA_H-elongata_contig49774.12190.1 vs. uniprot
Match: A0A835YKG3_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKG3_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.990e-33
Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    1 SSQMLYHLAKQEGGFTPKRYFSIDRVFRNETMDATHLCEFHQVEGLVADRNLCLGDLIGVIKTFFYKIGIKQ 216
            SSQMLY LA QEGGF PKRYFSIDRVFRNE+MDATHLCEFHQVEGLVADRNL LGDLIG IK FF +IGI Q
Sbjct:  337 SSQMLYKLANQEGGFQPKRYFSIDRVFRNESMDATHLCEFHQVEGLVADRNLSLGDLIGTIKFFFERIGITQ 408
[Close]
BLAST of mRNA_H-elongata_contig49774.12190.1 vs. uniprot
Match: W7T7M1_9STRA (Phenylalanyl-trna synthetase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7M1_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.540e-33
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:   10 MLYHLAKQEGGFTPKRYFSIDRVFRNETMDATHLCEFHQVEGLVADRNLCLGDLIGVIKTFFYKIGIKQ 216
            MLY LA Q GGF+P++YFSIDRVFRNE+MDATHLCEFHQVEGLVADRNL LGDLIG IKTFF +IGI  
Sbjct:    1 MLYQLATQPGGFSPRKYFSIDRVFRNESMDATHLCEFHQVEGLVADRNLTLGDLIGTIKTFFERIGITD 69
[Close]
BLAST of mRNA_H-elongata_contig49774.12190.1 vs. uniprot
Match: A0A7S4J9R1_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J9R1_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.920e-33
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:    1 SSQMLYHLAKQEGGFTPKRYFSIDRVFRNETMDATHLCEFHQVEGLVADRNLCLGDLIGVIKTFFYKIGIKQ 216
            SSQMLY LA QEGGFTP+RYFSIDRVFRNETMDATHLCEFHQVEGLVAD +L LGDLIG I+TFF KIGI++
Sbjct:  337 SSQMLYKLANQEGGFTPQRYFSIDRVFRNETMDATHLCEFHQVEGLVADYDLSLGDLIGTIETFFKKIGIEK 408
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49774.12190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLA6_ECTSI1.410e-3788.89Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxI... [more]
A0A7S3LAA3_9STRA1.760e-3584.72Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S1FLS1_9STRA3.690e-3586.11Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Core... [more]
A0A7S2Y5I1_9STRA1.750e-3484.72Phenylalanine--tRNA ligase n=1 Tax=Amphiprora palu... [more]
A0A812V904_SYMMI2.120e-3483.33Phenylalanine--tRNA ligase n=1 Tax=Symbiodinium mi... [more]
A0A6V2DUX8_9STRA3.920e-3487.50Phenylalanine--tRNA ligase n=1 Tax=Ditylum brightw... [more]
A0A7S2XV42_9STRA1.260e-3383.33Phenylalanine--tRNA ligase n=2 Tax=Bacillariophyta... [more]
A0A835YKG3_9STRA1.990e-3386.11Phenylalanine--tRNA ligase n=2 Tax=Tribonema minus... [more]
W7T7M1_9STRA3.540e-3381.16Phenylalanyl-trna synthetase n=1 Tax=Nannochlorops... [more]
A0A7S4J9R1_9STRA3.920e-3384.72Phenylalanine--tRNA ligase n=2 Tax=Odontella aurit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49774contigH-elongata_contig49774:106..804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue4.1e-30
Seed eggNOG ortholog2880.D8LLA6
Preferred nameFARSA
KEGG rclassRC00055,RC00523
KEGG koko:K01889
KEGG ReactionR03660
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000122,GO:0002161,GO:0002181,GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006450,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016787,GO:0016788,GO:0016874,GO:0016875,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051259,GO:0051262,GO:0051290,GO:0051291,GO:0052689,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.phenylalanyl-tRNA aminoacylation
EggNOG OGsCOG0016@1,KOG2784@2759
EC6.1.1.20
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size220
Cds size210
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49774.12190.1prot_H-elongata_contig49774.12190.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49774 115..804 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930819.9232595-UTR-H-elongata_contig49774:105..1141622930819.9232595-UTR-H-elongata_contig49774:105..114Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49774 106..114 +
1691679584.194705-UTR-H-elongata_contig49774:105..1141691679584.194705-UTR-H-elongata_contig49774:105..114Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49774 106..114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930819.940653-CDS-H-elongata_contig49774:114..2311622930819.940653-CDS-H-elongata_contig49774:114..231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49774 115..231 +
1691679584.2059605-CDS-H-elongata_contig49774:114..2311691679584.2059605-CDS-H-elongata_contig49774:114..231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49774 115..231 +
1622930819.9530752-CDS-H-elongata_contig49774:711..8041622930819.9530752-CDS-H-elongata_contig49774:711..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49774 712..804 +
1691679584.2180383-CDS-H-elongata_contig49774:711..8041691679584.2180383-CDS-H-elongata_contig49774:711..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49774 712..804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49774.12190.1

>prot_H-elongata_contig49774.12190.1 ID=prot_H-elongata_contig49774.12190.1|Name=mRNA_H-elongata_contig49774.12190.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MLYHLAKQEGGFTPKRYFSIDRVFRNETMDATHLCEFHQVEGLVADRNLC
LGDLIGVIKTFFYKIGIKQA
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mRNA from alignment at H-elongata_contig49774:106..804+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49774.12190.1 ID=mRNA_H-elongata_contig49774.12190.1|Name=mRNA_H-elongata_contig49774.12190.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=699bp|location=Sequence derived from alignment at H-elongata_contig49774:106..804+ (Himanthalia elongata Himel1 dioecious)
TCTTCGCAGATGCTTTACCACCTGGCTAAGCAAGAAGGCGGTTTCACTCC
GAAACGCTACTTTTCCATCGACAGGGTCTTCCGGAATGAAACCATGGACG
CGACGCACCTCTGCGAGTTCCACCAGGTACGATTCAAGTTGAATAGCACG
AACCGGACCGCAGTAAGACCCCGGGAATTTTATTGGATTTTTTTTTTGGT
GATTTGCTGGTACGGTTCAAGCTCGAACACGTAGGGCGAAGGAAGACCCC
GCGAATTTTCTTGGTCTGCGAGTTTCAACAGGCACCGATGGATACCCTGC
GATCGTTTTTGGATTTTTTTCTCGGTGAAGAGGGTGGAGAACGGTGGGCC
GACGCAGCCGTACTCCGTCCCATACGGTGCCGTTGAAGGGTTTGTGTCAT
AGGTAGGGAATCAATGAGGGAGGGGATGATTAATAATTATACGCACAAGA
AAAGGAGGAGACCCTCTCTCCCCTGAGAGACGCACGTTTGCGTTGTTGTT
TTTGCGCGTGTTTGCTTTTTTTTGTGTGTTGTAGCCGTAATCAAGGCCTT
TCGTAGATGTATGTCCCAAGCAGGAGCTCGTTTTCCGTCGGATTTTTTCA
ACACAGGTGGAAGGCCTGGTCGCCGACCGCAATCTCTGCCTCGGAGACCT
GATCGGCGTCATCAAGACCTTCTTTTACAAGATTGGCATCAAACAGGCA
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Coding sequence (CDS) from alignment at H-elongata_contig49774:106..804+

>mRNA_H-elongata_contig49774.12190.1 ID=mRNA_H-elongata_contig49774.12190.1|Name=mRNA_H-elongata_contig49774.12190.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig49774:106..804+ (Himanthalia elongata Himel1 dioecious)
ATGCTTTACCACCTGGCTAAGCAAGAAGGCGGTTTCACTCCGAAACGCTA
CTTTTCCATCGACAGGGTCTTCCGGAATGAAACCATGGACGCGACGCACC
TCTGCGAGTTCCACCAGATGCTTTACCACCTGGCTAAGCAAGAAGGCGGT
TTCACTCCGAAACGCTACTTTTCCATCGACAGGGTCTTCCGGAATGAAAC
CATGGACGCGACGCACCTCTGCGAGTTCCACCAGGTGGAAGGCCTGGTCG
CCGACCGCAATCTCTGCCTCGGAGACCTGATCGGCGTCATCAAGACCTTC
TTTTACAAGATTGGCATCAAACAGGCAGTGGAAGGCCTGGTCGCCGACCG
CAATCTCTGCCTCGGAGACCTGATCGGCGTCATCAAGACCTTCTTTTACA
AGATTGGCATCAAACAGGCA
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