mRNA_H-elongata_contig49750.12186.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: D7FN62_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN62_ECTSI) HSP 1 Score: 148 bits (373), Expect = 1.430e-38 Identity = 76/121 (62.81%), Postives = 89/121 (73.55%), Query Frame = 1
Query: 1 QINDRLEFPLELDMFPFTKEGRVAAVAAAAAAEGSVQVGKIGRFPSRRKSDNQTCDKAHDHYLYHLAGVVVHMGTANSGHYYSFIRTRNGDGDGEWLEFNDTVVSPFDVKDMAVECFGGEE 363
+INDRLEFP+EL+M+P+TKEGR A AAA+ G +VG G K + K ++Y YHLAGVVVHMGTANSGHYYS+IR R DG GEWLEFNDTVVS FDV+DM EC+GGEE
Sbjct: 1675 KINDRLEFPIELNMYPYTKEGRAATTAAASKEGGHEEVGTEGADAEVEKEEEPA--KPEEYYHYHLAGVVVHMGTANSGHYYSYIRPR--DGGGEWLEFNDTVVSTFDVEDMEAECYGGEE 1791
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: A0A6H5KLT8_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT8_9PHAE) HSP 1 Score: 147 bits (371), Expect = 2.630e-38 Identity = 76/121 (62.81%), Postives = 87/121 (71.90%), Query Frame = 1
Query: 1 QINDRLEFPLELDMFPFTKEGRVAAVAAAAAAEGSVQVGKIGRFPSRRKSDNQTCDKAHDHYLYHLAGVVVHMGTANSGHYYSFIRTRNGDGDGEWLEFNDTVVSPFDVKDMAVECFGGEE 363
+INDRLEFP+EL+M+P+TKEGR A AA G +VG G K + K ++Y YHLAGVVVHMGTANSGHYYS+IR R DG GEWLEFNDTVVS FDV+DM ECFGGEE
Sbjct: 919 KINDRLEFPIELNMYPYTKEGRAATTTAAGKEGGHEEVGTKGAGAEVEKEEEPA--KPEEYYHYHLAGVVVHMGTANSGHYYSYIRPR--DGGGEWLEFNDTVVSTFDVEDMEAECFGGEE 1035
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: I2CRD3_NANGC (Ubiquitin carboxyl-terminal hydrolase 7 n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRD3_NANGC) HSP 1 Score: 126 bits (316), Expect = 6.580e-31 Identity = 67/128 (52.34%), Postives = 85/128 (66.41%), Query Frame = 1
Query: 1 QINDRLEFPLELDMFPFTKEGRVAA------VAAAAAAEGSVQVGKIGRFPSRRKSDNQTCDKAHDHYLYHLAGVVVHMGTANSGHYYSFIRTRNGDGDGEWLEFNDTVVSPFDVKDMAVECFGGEET 366
+INDRLEFP++LDM+P+T EGR A +AAA AE S ++ R+ ++YLY LAGVV+HMGTANSGHYYS+IR R G+ G W EFNDTVV+ F+ D+ VECFGG+ET
Sbjct: 415 KINDRLEFPVDLDMYPYTLEGRTAVRKGGTGIAAAGNAEDSAEL---------RERTQSAAGHPPEYYLYRLAGVVIHMGTANSGHYYSYIRERGGERSG-WFEFNDTVVTDFNPADLEVECFGGQET 532
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: A0A4D9CLS1_9STRA (USP domain-containing protein n=5 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLS1_9STRA) HSP 1 Score: 124 bits (310), Expect = 4.400e-30 Identity = 65/128 (50.78%), Postives = 85/128 (66.41%), Query Frame = 1
Query: 1 QINDRLEFPLELDMFPFTKEGRVAA------VAAAAAAEGSVQVGKIGRFPSRRKSDNQTCDKAHDHYLYHLAGVVVHMGTANSGHYYSFIRTRNGDGDGEWLEFNDTVVSPFDVKDMAVECFGGEET 366
+INDRLEFP++LDM+P+T EGR A ++AA AE + ++ R+ ++YLY LAGVV+HMGTANSGHYYS+IR R G+ G W EFNDTVV+ F+ D+ VECFGG+ET
Sbjct: 2449 KINDRLEFPVDLDMYPYTLEGRTAVRKGGTGISAAGNAEDAAEL---------RERTQSAAGHPPEYYLYRLAGVVIHMGTANSGHYYSYIRERGGERSG-WFEFNDTVVTDFNPADLEVECFGGQET 2566
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: A0A8K1C2U9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2U9_PYTOL) HSP 1 Score: 108 bits (271), Expect = 7.840e-25 Identity = 56/121 (46.28%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 1 QINDRLEFPLELDMFPFTKEGRVAAVAAAAAAEGSVQVGKIGRFPSRRKSDNQTCDKAHDHYLYHLAGVVVHMGTANSGHYYSFIRTRNGDGDGE--WLEFNDTVVSPFDVKDMAVECFGG 357
+++DR EFP+ELDMF +TKEG+ A + + + S N +A ++Y Y L G VVHMGTA+SGHYYSF+R + G+ D E W EFNDT+V+PFD + VECFGG
Sbjct: 2153 KLHDRFEFPMELDMFEYTKEGQEEARRRRSRSTSGLD------DEQNDSSTNSDRSRAPEYYQYELVGTVVHMGTAHSGHYYSFLREQEGEADAEPRWYEFNDTMVTPFDPDQIPVECFGG 2267
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: K3WT18_GLOUD (USP domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WT18_GLOUD) HSP 1 Score: 108 bits (270), Expect = 1.060e-24 Identity = 57/126 (45.24%), Postives = 79/126 (62.70%), Query Frame = 1
Query: 1 QINDRLEFPLELDMFPFTKEGRVAA---VAAAAAAEGSVQVGKIGRFPSRRKSDNQTCDKAHDHYLYHLAGVVVHMGTANSGHYYSFIRTRNGDGD-GEWLEFNDTVVSPFDVKDMAVECFGGEET 366
+++DR EFP+ELDM+P+TK+G+ +++A+ G+ + S A ++ Y L G VVHMGTANSGHYYSF+R +NG D +W EFNDTVVS F+ + + ECFGGEET
Sbjct: 1929 KLHDRFEFPMELDMYPYTKQGQEEKRKRSSSSASNTGASDEASDXXXXXSKSSARDGRSTAPEYSQYELVGTVVHMGTANSGHYYSFLREQNGGNDYNQWYEFNDTVVSAFNPQQIPDECFGGEET 2054
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: A0A6A7FQH8_9CRUS (Ubiquitin domain containing protein (Fragment) n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FQH8_9CRUS) HSP 1 Score: 105 bits (261), Expect = 1.670e-23 Identity = 60/134 (44.78%), Postives = 76/134 (56.72%), Query Frame = 1
Query: 1 QINDRLEFPLELDMFPFTKEGRVAAVAAAAAAEGSVQ--------VGKIGRFPSRRKSDNQTCDKAHDHYLYHLAGVVVHMGTANSGHYYSFIRTRN-GDGD----GEWLEFNDTVVSPFDVKDMAVECFGGEE 363
++NDR EFP+ELDM P+TKE A A + + S GK G ++S+ +T +Y Y L GVVVHMG AN GHYYSFI+ R G+ + G W EFND VV D + +A ECFGGEE
Sbjct: 655 KVNDRCEFPIELDMRPYTKEALAAKEGAKSENDNSSSNYSQKDPSEGKNGGKGEGKESEEETVQHPDSYYQYRLVGVVVHMGIANGGHYYSFIKERTKGNAEVSNLGNWFEFNDAVVRAMDPETLADECFGGEE 788
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: M4B7Y8_HYAAE (USP domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B7Y8_HYAAE) HSP 1 Score: 105 bits (261), Expect = 1.740e-23 Identity = 57/122 (46.72%), Postives = 74/122 (60.66%), Query Frame = 1
Query: 1 QINDRLEFPLELDMFPFTKEGRVAAVAAAAAAEGSVQVGKIGRFPSRRKSDNQTCDKAHDHYLYHLAGVVVHMGTANSGHYYSFIRTRNGDGD-GEWLEFNDTVVSPFDVKDMAVECFGGEE 363
+++DR EFP ELDM+P+TKEG+ A A++ R +R S N A ++ Y L G VVH+GTA SGHYYSF+R + D +W EFNDTVV+PFD + ECFGGEE
Sbjct: 2202 KLHDRFEFPTELDMYPYTKEGQQEKRKALASSGDDGTTSHKIRLSTRSDSMNDRRTTAPEYSQYELVGTVVHLGTALSGHYYSFLRDQQVPRDKSQWYEFNDTVVTPFDPLQIPDECFGGEE 2323
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: A0A662WUW1_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUW1_9STRA) HSP 1 Score: 104 bits (260), Expect = 2.320e-23 Identity = 61/131 (46.56%), Postives = 81/131 (61.83%), Query Frame = 1
Query: 1 QINDRLEFPLELDMFPFTKEGRVAAVAAAAAAEGSVQVGKIGRFPSRRK--SDNQTCD---KAHDHYLYHLAGVVVHMGTANSGHYYSFIRT----RNGDGDGEWLEFNDTVVSPFDVKDMAVECFGGEET 366
+++DR EFP ELDM+P+TKEG+ A+++ IG +R SD T D A ++ Y L G VVH+GTA+SGHYYSF+R RN D +W EFNDT+V+PFD + + ECFGGEET
Sbjct: 564 KLHDRFEFPTELDMYPYTKEGQQEKRKRASSSADD----NIGSHEARLSTHSDGSTDDGRTTAPEYSQYELVGTVVHLGTAHSGHYYSFLRDQQTQRNKD---QWYEFNDTLVTPFDAEQIPEECFGGEET 687
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: A0A662WEI6_9STRA (USP domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WEI6_9STRA) HSP 1 Score: 104 bits (259), Expect = 3.240e-23 Identity = 60/131 (45.80%), Postives = 81/131 (61.83%), Query Frame = 1
Query: 1 QINDRLEFPLELDMFPFTKEGRVAAVAAAAAAEGSVQVGKIGRFPSRRK--SDNQTCD---KAHDHYLYHLAGVVVHMGTANSGHYYSFIRT----RNGDGDGEWLEFNDTVVSPFDVKDMAVECFGGEET 366
+++DR EFP ELDM+P+TKEG+ A+++ +G +R SD T D A ++ Y L G VVH+GTA+SGHYYSF+R RN D +W EFNDT+V+PFD + + ECFGGEET
Sbjct: 2262 KLHDRFEFPTELDMYPYTKEGQQEKRKRASSSADD----NVGSHEARLSTHSDGSTDDGRTTAPEYSQYELVGTVVHLGTAHSGHYYSFLRDQQTQRNKD---QWYEFNDTLVTPFDAEQIPEECFGGEET 2385 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49750.12186.1 >prot_H-elongata_contig49750.12186.1 ID=prot_H-elongata_contig49750.12186.1|Name=mRNA_H-elongata_contig49750.12186.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp QINDRLEFPLELDMFPFTKEGRVAAVAAAAAAEGSVQVGKIGRFPSRRKSback to top mRNA from alignment at H-elongata_contig49750:1351..2827+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49750.12186.1 ID=mRNA_H-elongata_contig49750.12186.1|Name=mRNA_H-elongata_contig49750.12186.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1477bp|location=Sequence derived from alignment at H-elongata_contig49750:1351..2827+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49750:1351..2827+ >mRNA_H-elongata_contig49750.12186.1 ID=mRNA_H-elongata_contig49750.12186.1|Name=mRNA_H-elongata_contig49750.12186.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig49750:1351..2827+ (Himanthalia elongata Himel1 dioecious)back to top |