mRNA_H-elongata_contig49750.12186.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49750.12186.1
Unique NamemRNA_H-elongata_contig49750.12186.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: D7FN62_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN62_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.430e-38
Identity = 76/121 (62.81%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    1 QINDRLEFPLELDMFPFTKEGRVAAVAAAAAAEGSVQVGKIGRFPSRRKSDNQTCDKAHDHYLYHLAGVVVHMGTANSGHYYSFIRTRNGDGDGEWLEFNDTVVSPFDVKDMAVECFGGEE 363
            +INDRLEFP+EL+M+P+TKEGR A  AAA+   G  +VG  G      K +     K  ++Y YHLAGVVVHMGTANSGHYYS+IR R  DG GEWLEFNDTVVS FDV+DM  EC+GGEE
Sbjct: 1675 KINDRLEFPIELNMYPYTKEGRAATTAAASKEGGHEEVGTEGADAEVEKEEEPA--KPEEYYHYHLAGVVVHMGTANSGHYYSYIRPR--DGGGEWLEFNDTVVSTFDVEDMEAECYGGEE 1791          
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: A0A6H5KLT8_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT8_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.630e-38
Identity = 76/121 (62.81%), Postives = 87/121 (71.90%), Query Frame = 1
Query:    1 QINDRLEFPLELDMFPFTKEGRVAAVAAAAAAEGSVQVGKIGRFPSRRKSDNQTCDKAHDHYLYHLAGVVVHMGTANSGHYYSFIRTRNGDGDGEWLEFNDTVVSPFDVKDMAVECFGGEE 363
            +INDRLEFP+EL+M+P+TKEGR A   AA    G  +VG  G      K +     K  ++Y YHLAGVVVHMGTANSGHYYS+IR R  DG GEWLEFNDTVVS FDV+DM  ECFGGEE
Sbjct:  919 KINDRLEFPIELNMYPYTKEGRAATTTAAGKEGGHEEVGTKGAGAEVEKEEEPA--KPEEYYHYHLAGVVVHMGTANSGHYYSYIRPR--DGGGEWLEFNDTVVSTFDVEDMEAECFGGEE 1035          
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: I2CRD3_NANGC (Ubiquitin carboxyl-terminal hydrolase 7 n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRD3_NANGC)

HSP 1 Score: 126 bits (316), Expect = 6.580e-31
Identity = 67/128 (52.34%), Postives = 85/128 (66.41%), Query Frame = 1
Query:    1 QINDRLEFPLELDMFPFTKEGRVAA------VAAAAAAEGSVQVGKIGRFPSRRKSDNQTCDKAHDHYLYHLAGVVVHMGTANSGHYYSFIRTRNGDGDGEWLEFNDTVVSPFDVKDMAVECFGGEET 366
            +INDRLEFP++LDM+P+T EGR A       +AAA  AE S ++         R+          ++YLY LAGVV+HMGTANSGHYYS+IR R G+  G W EFNDTVV+ F+  D+ VECFGG+ET
Sbjct:  415 KINDRLEFPVDLDMYPYTLEGRTAVRKGGTGIAAAGNAEDSAEL---------RERTQSAAGHPPEYYLYRLAGVVIHMGTANSGHYYSYIRERGGERSG-WFEFNDTVVTDFNPADLEVECFGGQET 532          
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: A0A4D9CLS1_9STRA (USP domain-containing protein n=5 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLS1_9STRA)

HSP 1 Score: 124 bits (310), Expect = 4.400e-30
Identity = 65/128 (50.78%), Postives = 85/128 (66.41%), Query Frame = 1
Query:    1 QINDRLEFPLELDMFPFTKEGRVAA------VAAAAAAEGSVQVGKIGRFPSRRKSDNQTCDKAHDHYLYHLAGVVVHMGTANSGHYYSFIRTRNGDGDGEWLEFNDTVVSPFDVKDMAVECFGGEET 366
            +INDRLEFP++LDM+P+T EGR A       ++AA  AE + ++         R+          ++YLY LAGVV+HMGTANSGHYYS+IR R G+  G W EFNDTVV+ F+  D+ VECFGG+ET
Sbjct: 2449 KINDRLEFPVDLDMYPYTLEGRTAVRKGGTGISAAGNAEDAAEL---------RERTQSAAGHPPEYYLYRLAGVVIHMGTANSGHYYSYIRERGGERSG-WFEFNDTVVTDFNPADLEVECFGGQET 2566          
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: A0A8K1C2U9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2U9_PYTOL)

HSP 1 Score: 108 bits (271), Expect = 7.840e-25
Identity = 56/121 (46.28%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 QINDRLEFPLELDMFPFTKEGRVAAVAAAAAAEGSVQVGKIGRFPSRRKSDNQTCDKAHDHYLYHLAGVVVHMGTANSGHYYSFIRTRNGDGDGE--WLEFNDTVVSPFDVKDMAVECFGG 357
            +++DR EFP+ELDMF +TKEG+  A    + +   +             S N    +A ++Y Y L G VVHMGTA+SGHYYSF+R + G+ D E  W EFNDT+V+PFD   + VECFGG
Sbjct: 2153 KLHDRFEFPMELDMFEYTKEGQEEARRRRSRSTSGLD------DEQNDSSTNSDRSRAPEYYQYELVGTVVHMGTAHSGHYYSFLREQEGEADAEPRWYEFNDTMVTPFDPDQIPVECFGG 2267          
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: K3WT18_GLOUD (USP domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WT18_GLOUD)

HSP 1 Score: 108 bits (270), Expect = 1.060e-24
Identity = 57/126 (45.24%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    1 QINDRLEFPLELDMFPFTKEGRVAA---VAAAAAAEGSVQVGKIGRFPSRRKSDNQTCDKAHDHYLYHLAGVVVHMGTANSGHYYSFIRTRNGDGD-GEWLEFNDTVVSPFDVKDMAVECFGGEET 366
            +++DR EFP+ELDM+P+TK+G+       +++A+  G+            + S       A ++  Y L G VVHMGTANSGHYYSF+R +NG  D  +W EFNDTVVS F+ + +  ECFGGEET
Sbjct: 1929 KLHDRFEFPMELDMYPYTKQGQEEKRKRSSSSASNTGASDEASDXXXXXSKSSARDGRSTAPEYSQYELVGTVVHMGTANSGHYYSFLREQNGGNDYNQWYEFNDTVVSAFNPQQIPDECFGGEET 2054          
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: A0A6A7FQH8_9CRUS (Ubiquitin domain containing protein (Fragment) n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FQH8_9CRUS)

HSP 1 Score: 105 bits (261), Expect = 1.670e-23
Identity = 60/134 (44.78%), Postives = 76/134 (56.72%), Query Frame = 1
Query:    1 QINDRLEFPLELDMFPFTKEGRVAAVAAAAAAEGSVQ--------VGKIGRFPSRRKSDNQTCDKAHDHYLYHLAGVVVHMGTANSGHYYSFIRTRN-GDGD----GEWLEFNDTVVSPFDVKDMAVECFGGEE 363
            ++NDR EFP+ELDM P+TKE   A   A +  + S           GK G     ++S+ +T      +Y Y L GVVVHMG AN GHYYSFI+ R  G+ +    G W EFND VV   D + +A ECFGGEE
Sbjct:  655 KVNDRCEFPIELDMRPYTKEALAAKEGAKSENDNSSSNYSQKDPSEGKNGGKGEGKESEEETVQHPDSYYQYRLVGVVVHMGIANGGHYYSFIKERTKGNAEVSNLGNWFEFNDAVVRAMDPETLADECFGGEE 788          
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: M4B7Y8_HYAAE (USP domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B7Y8_HYAAE)

HSP 1 Score: 105 bits (261), Expect = 1.740e-23
Identity = 57/122 (46.72%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 QINDRLEFPLELDMFPFTKEGRVAAVAAAAAAEGSVQVGKIGRFPSRRKSDNQTCDKAHDHYLYHLAGVVVHMGTANSGHYYSFIRTRNGDGD-GEWLEFNDTVVSPFDVKDMAVECFGGEE 363
            +++DR EFP ELDM+P+TKEG+     A A++          R  +R  S N     A ++  Y L G VVH+GTA SGHYYSF+R +    D  +W EFNDTVV+PFD   +  ECFGGEE
Sbjct: 2202 KLHDRFEFPTELDMYPYTKEGQQEKRKALASSGDDGTTSHKIRLSTRSDSMNDRRTTAPEYSQYELVGTVVHLGTALSGHYYSFLRDQQVPRDKSQWYEFNDTVVTPFDPLQIPDECFGGEE 2323          
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: A0A662WUW1_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUW1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.320e-23
Identity = 61/131 (46.56%), Postives = 81/131 (61.83%), Query Frame = 1
Query:    1 QINDRLEFPLELDMFPFTKEGRVAAVAAAAAAEGSVQVGKIGRFPSRRK--SDNQTCD---KAHDHYLYHLAGVVVHMGTANSGHYYSFIRT----RNGDGDGEWLEFNDTVVSPFDVKDMAVECFGGEET 366
            +++DR EFP ELDM+P+TKEG+      A+++        IG   +R    SD  T D    A ++  Y L G VVH+GTA+SGHYYSF+R     RN D   +W EFNDT+V+PFD + +  ECFGGEET
Sbjct:  564 KLHDRFEFPTELDMYPYTKEGQQEKRKRASSSADD----NIGSHEARLSTHSDGSTDDGRTTAPEYSQYELVGTVVHLGTAHSGHYYSFLRDQQTQRNKD---QWYEFNDTLVTPFDAEQIPEECFGGEET 687          
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Match: A0A662WEI6_9STRA (USP domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WEI6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 3.240e-23
Identity = 60/131 (45.80%), Postives = 81/131 (61.83%), Query Frame = 1
Query:    1 QINDRLEFPLELDMFPFTKEGRVAAVAAAAAAEGSVQVGKIGRFPSRRK--SDNQTCD---KAHDHYLYHLAGVVVHMGTANSGHYYSFIRT----RNGDGDGEWLEFNDTVVSPFDVKDMAVECFGGEET 366
            +++DR EFP ELDM+P+TKEG+      A+++        +G   +R    SD  T D    A ++  Y L G VVH+GTA+SGHYYSF+R     RN D   +W EFNDT+V+PFD + +  ECFGGEET
Sbjct: 2262 KLHDRFEFPTELDMYPYTKEGQQEKRKRASSSADD----NVGSHEARLSTHSDGSTDDGRTTAPEYSQYELVGTVVHLGTAHSGHYYSFLRDQQTQRNKD---QWYEFNDTLVTPFDAEQIPEECFGGEET 2385          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49750.12186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN62_ECTSI1.430e-3862.81USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KLT8_9PHAE2.630e-3862.81USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
I2CRD3_NANGC6.580e-3152.34Ubiquitin carboxyl-terminal hydrolase 7 n=2 Tax=Na... [more]
A0A4D9CLS1_9STRA4.400e-3050.78USP domain-containing protein n=5 Tax=Monodopsidac... [more]
A0A8K1C2U9_PYTOL7.840e-2546.28Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WT18_GLOUD1.060e-2445.24USP domain-containing protein n=1 Tax=Globisporang... [more]
A0A6A7FQH8_9CRUS1.670e-2344.78Ubiquitin domain containing protein (Fragment) n=2... [more]
M4B7Y8_HYAAE1.740e-2346.72USP domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A662WUW1_9STRA2.320e-2346.56USP domain-containing protein (Fragment) n=1 Tax=N... [more]
A0A662WEI6_9STRA3.240e-2345.80USP domain-containing protein n=1 Tax=Nothophytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49750contigH-elongata_contig49750:1351..2827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.7
Seed ortholog evalue2.1e-33
Seed eggNOG ortholog2880.D7FN62
KEGG koko:K11840,ko:K11869
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size423
Cds size423
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49750.12186.1prot_H-elongata_contig49750.12186.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49750 1351..2827 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930819.3831131-CDS-H-elongata_contig49750:1350..15131622930819.3831131-CDS-H-elongata_contig49750:1350..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49750 1351..1513 +
1691679583.8958104-CDS-H-elongata_contig49750:1350..15131691679583.8958104-CDS-H-elongata_contig49750:1350..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49750 1351..1513 +
1622930819.3999932-CDS-H-elongata_contig49750:1761..19281622930819.3999932-CDS-H-elongata_contig49750:1761..1928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49750 1762..1928 +
1691679583.9077911-CDS-H-elongata_contig49750:1761..19281691679583.9077911-CDS-H-elongata_contig49750:1761..1928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49750 1762..1928 +
1622930819.4130406-CDS-H-elongata_contig49750:2734..28271622930819.4130406-CDS-H-elongata_contig49750:2734..2827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49750 2735..2827 +
1691679583.919634-CDS-H-elongata_contig49750:2734..28271691679583.919634-CDS-H-elongata_contig49750:2734..2827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49750 2735..2827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49750.12186.1

>prot_H-elongata_contig49750.12186.1 ID=prot_H-elongata_contig49750.12186.1|Name=mRNA_H-elongata_contig49750.12186.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
QINDRLEFPLELDMFPFTKEGRVAAVAAAAAAEGSVQVGKIGRFPSRRKS
DNQTCDKAHDHYLYHLAGVVVHMGTANSGHYYSFIRTRNGDGDGEWLEFN
DTVVSPFDVKDMAVECFGGEETSRRGGGSSSSSSAVVYSAP
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mRNA from alignment at H-elongata_contig49750:1351..2827+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49750.12186.1 ID=mRNA_H-elongata_contig49750.12186.1|Name=mRNA_H-elongata_contig49750.12186.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1477bp|location=Sequence derived from alignment at H-elongata_contig49750:1351..2827+ (Himanthalia elongata Himel1 dioecious)
CAGATCAACGATCGCTTGGAGTTCCCCTTGGAGCTGGACATGTTCCCTTT CACCAAGGAGGGACGCGTCGCGGCAGTTGCAGCTGCAGCGGCTGCGGAAG GCTCAGTGCAGGTGGGGAAAATAGGACGTTTTCCCTCGAGACGTAAGTCA GATAATCAAACGTGTACCATCGACACTTCGTATAGCACTTGATACACCAT CGACACTTCGAATGAGTGATGAACGATGAGTGATGATGCTCGTACGTTAT GCTCCGCCGGAGTCCAATCCAATCGAGTGCAGCCCTTCACAAACGTCCAG AATGTGACCTCCCTCTCTCTCTCTCTCTCTCTTTATCTCTCCGCGATGTC TTTGGTGGTAATGATTGCGGTGGTGGTTGACAGTCCCGTCAGGGTGGTGG GCGTACCACAGGCGACAAGGCGCATGATCACTACCTGTACCACCTTGCGG GGGTAGTGGTACACATGGGCACGGCTAACTCCGGCCACTATTACAGCTTC ATTCGAACGAGGAACGGTGACGGAGACGGAGAGTGGCTAGAGTTCAACGA CACCGTTGTCTCGCCCTTCGACGTCAAGGTGCGCGGCAGGAGGGCATGTA TCTAGTGTGCCGCAGTGTACGCAGTAGGGCATAGACTGTGGGTGCAAAGC TTCGTGTGTTTTCGCGTGTTTGTGAAGATGAGGGGCGGGAGAGAAACAAG GCGGACTTTATTTTCTTTCTTTTTCCACCTTCATCCCCACTTACACTTCC ACCTTCCAGTATTGTTTTCGGCCTGGTGTATTGTCTAGCGCTTGTTTGTC GTTGGAAATGTTTCATTTGTAGCCTCGTCGTCTCTTTTGACGACCGAGAA TATCATTAGTGACGGCAATCTCTCCTGCTCTCCTGGGCGTCACCACTCTG TAAAAATATGAAGTTCCTTCGCGTGCTTTACTCGCGTGCTGTACACGCTG GCTTTAGGCGTAACCCCAGCCCCCATTCCCCCTCTTTATGTACCCCACCC GTCATAGCCCAAAATCACAAATCAACCCCGAGGATGGAGTAATGAAATTT CCTTATTTTTGTGATGCGCACGGCAATGCCTAGCATTTGGCGTTTTGCAT CATGTTTATGGCGTATGAGATTATACCAGCGTCGCTCTCATTAGCTACTA ATTGCAATTTTGGCTGAGGCCGTTTGTGGCTGTGGCTGTTCGTTCTTGAC TCATATATAATAGTGATGATATATAGGATCGATGATCACGAAGGTTTGTG CAGTGCTTCTGCGTGCGCCCACCACCGTCTTTGCTTGATCAAGCCTTTTG AAGCCTAGTCAAGTCTACTCTCAAGCATCAAATCCTCGAGTCAAAGTTAT GTCAGCTGTTTCTCGCGTGCTGTATCAAACGTAGGACATGGCGGTCGAAT GTTTCGGTGGTGAGGAGACCTCCCGGCGCGGCGGTGGCAGCAGCAGCAGC AGCAGCGCCGTTGTCTATTCGGCGCCG
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Coding sequence (CDS) from alignment at H-elongata_contig49750:1351..2827+

>mRNA_H-elongata_contig49750.12186.1 ID=mRNA_H-elongata_contig49750.12186.1|Name=mRNA_H-elongata_contig49750.12186.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig49750:1351..2827+ (Himanthalia elongata Himel1 dioecious)
CAGATCAACGATCGCTTGGAGTTCCCCTTGGAGCTGGACATGTTCCCTTT
CACCAAGGAGGGACGCGTCGCGGCAGTTGCAGCTGCAGCGGCTGCGGAAG
GCTCAGTGCAGGTGGGGAAAATAGGACGTTTTCCCTCGAGACGTAAGTCA
GATAATCAAACGTCAGATCAACGATCGCTTGGAGTTCCCCTTGGAGCTGG
ACATGTTCCCTTTCACCAAGGAGGGACGCGTCGCGGCAGTTGCAGCTGCA
GCGGCTGCGGAAGGCTCAGTGCAGGTGGGGAAAATAGGACGTTTTCCCTC
GAGACGTAAGTCAGATAATCAAACGTGCGACAAGGCGCATGATCACTACC
TGTACCACCTTGCGGGGGTAGTGGTACACATGGGCACGGCTAACTCCGGC
CACTATTACAGCTTCATTCGAACGAGGAACGGTGACGGAGACGGAGAGTG
GCTAGAGTTCAACGACACCGTTGTCTCGCCCTTCGACGTCAAGGCGACAA
GGCGCATGATCACTACCTGTACCACCTTGCGGGGGTAGTGGTACACATGG
GCACGGCTAACTCCGGCCACTATTACAGCTTCATTCGAACGAGGAACGGT
GACGGAGACGGAGAGTGGCTAGAGTTCAACGACACCGTTGTCTCGCCCTT
CGACGTCAAGGACATGGCGGTCGAATGTTTCGGTGGTGAGGAGACCTCCC
GGCGCGGCGGTGGCAGCAGCAGCAGCAGCAGCGCCGTTGTCTATTCGGCG
CCGGACATGGCGGTCGAATGTTTCGGTGGTGAGGAGACCTCCCGGCGCGG
CGGTGGCAGCAGCAGCAGCAGCAGCGCCGTTGTCTATTCGGCGCCG
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