mRNA_H-elongata_contig49704.12179.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: D7G487_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G487_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 1.660e-22 Identity = 42/64 (65.62%), Postives = 56/64 (87.50%), Query Frame = 1
Query: 1 MSSRKTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILRVRNIT 192
MSSRKTRLAS+K+ +N+TRRG+VP+GK++ K+TGY+VGP LL FFLFVV+GSS+FQ+L+ T
Sbjct: 1 MSSRKTRLASEKHLQNVTRRGSVPKGKIENKKTGYAVGPCLLFFFLFVVLGSSLFQVLKAAGAT 64
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: A0A3M6VCY0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCY0_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 2.670e-12 Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 13 KTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILRVRNI 189
K RL S+K+ NIT+RG V + + ++K GYSVGP LL FF+FV+VGSSI QILR N+
Sbjct: 6 KIRLRSEKHLANITKRGLVSQPEKEEK--GYSVGPLLLGFFVFVLVGSSIIQILRTANL 62
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: A0A4D9DDX7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDX7_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 2.940e-12 Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 7 SRKTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILR 177
SR TRL S+K+ KN+T+RG VP GK ++ V P LL FF+FVVVGS+ FQI+R
Sbjct: 4 SRATRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIR 60
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: A0A835YYR5_9STRA (Ribosome associated membrane protein RAMP4-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYR5_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 5.770e-12 Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query: 7 SRKTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILRVRN 186
SRKTRLAS+KYA N+T+RG V G+ K G + PY+LAF +FV+VGS++FQI+ +
Sbjct: 4 SRKTRLASEKYAANVTKRGVVS-GRSKDKDGGSRLNPYVLAFIIFVMVGSTVFQIINMMQ 62
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: A0A8J1ZMH4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1ZMH4_9DINO) HSP 1 Score: 63.5 bits (153), Expect = 6.080e-12 Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 1
Query: 7 SRKTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQIL 174
+RKT+L SD++A+NI RG V ++ ++G+ VGP +LAFFLFVVVGS+I QI+
Sbjct: 4 TRKTKLKSDQFARNIRHRGNVATSDREKSKSGFRVGPLVLAFFLFVVVGSAILQII 59
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: A0A1Y1IIN1_KLENI (Ribosome associated membrane protein RAMP4 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IIN1_KLENI) HSP 1 Score: 63.2 bits (152), Expect = 8.420e-12 Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 1 MSSRKTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILR 177
+S+R T++ SDK+ KNI +RG VP K +K Y VGP +L FFLFVVVGS+I QI+R
Sbjct: 3 VSTRHTKVKSDKFQKNILKRGEVP--KTSKKEAKYPVGPIVLGFFLFVVVGSAILQIIR 59
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: A0A2D4BJU9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJU9_PYTIN) HSP 1 Score: 62.0 bits (149), Expect = 1.890e-11 Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 19 RLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILRVRNI 189
RL S+K+ NIT+RG V + D+K +GY+VGP LL FF+FV+VGSS+ QILR +
Sbjct: 2 RLRSEKHLANITKRGLV--SQPDKKESGYTVGPVLLGFFIFVLVGSSVIQILRTAQL 56
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: D0MTV7_PHYIT (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=D0MTV7_PHYIT) HSP 1 Score: 61.2 bits (147), Expect = 4.410e-11 Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1
Query: 13 KTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILRVRNI 189
K RL S+K+ NIT+RG V + + + K GYSVGP L+ FFLFV+VGSS+ QILR +
Sbjct: 6 KMRLRSEKHLANITKRGQVSQPQKEDK--GYSVGPILMGFFLFVLVGSSVIQILRTAQL 62
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: W7U255_9STRA (Endoplasmic reticulum, stress-associated Ramp4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U255_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.120e-10 Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1
Query: 7 SRKTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILR 177
SR RL S+K+ KN+T+RG VP GK ++ V P LL FF+FVVVGS+ FQI+R
Sbjct: 69 SRAIRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIR 125
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: K3WKY6_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WKY6_GLOUD) HSP 1 Score: 60.1 bits (144), Expect = 1.260e-10 Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 13 KTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILR 177
K RL S+K+ NIT+RG V K ++ +GY VGP LL FF+FV+VGSS+ QILR
Sbjct: 6 KMRLRSEKHLANITKRGMV--SKPEKNESGYGVGPVLLGFFVFVLVGSSVIQILR 58 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49704.12179.1 >prot_H-elongata_contig49704.12179.1 ID=prot_H-elongata_contig49704.12179.1|Name=mRNA_H-elongata_contig49704.12179.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp MSSRKTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVback to top mRNA from alignment at H-elongata_contig49704:101..3854- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49704.12179.1 ID=mRNA_H-elongata_contig49704.12179.1|Name=mRNA_H-elongata_contig49704.12179.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3754bp|location=Sequence derived from alignment at H-elongata_contig49704:101..3854- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49704:101..3854- >mRNA_H-elongata_contig49704.12179.1 ID=mRNA_H-elongata_contig49704.12179.1|Name=mRNA_H-elongata_contig49704.12179.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig49704:101..3854- (Himanthalia elongata Himel1 dioecious)back to top |