prot_H-elongata_contig49704.12179.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49704.12179.1
Unique Nameprot_H-elongata_contig49704.12179.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length64
Homology
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: D7G487_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G487_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.660e-22
Identity = 42/64 (65.62%), Postives = 56/64 (87.50%), Query Frame = 0
Query:    1 MSSRKTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILRVRNIT 64
            MSSRKTRLAS+K+ +N+TRRG+VP+GK++ K+TGY+VGP LL FFLFVV+GSS+FQ+L+    T
Sbjct:    1 MSSRKTRLASEKHLQNVTRRGSVPKGKIENKKTGYAVGPCLLFFFLFVVLGSSLFQVLKAAGAT 64          
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: A0A3M6VCY0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCY0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.670e-12
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 0
Query:    5 KTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILRVRNI 63
            K RL S+K+  NIT+RG V + + ++K  GYSVGP LL FF+FV+VGSSI QILR  N+
Sbjct:    6 KIRLRSEKHLANITKRGLVSQPEKEEK--GYSVGPLLLGFFVFVLVGSSIIQILRTANL 62          
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: A0A4D9DDX7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDX7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.940e-12
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 0
Query:    3 SRKTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILR 59
            SR TRL S+K+ KN+T+RG VP GK  ++     V P LL FF+FVVVGS+ FQI+R
Sbjct:    4 SRATRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIR 60          
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: A0A835YYR5_9STRA (Ribosome associated membrane protein RAMP4-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYR5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.770e-12
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 0
Query:    3 SRKTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILRVRN 62
            SRKTRLAS+KYA N+T+RG V  G+   K  G  + PY+LAF +FV+VGS++FQI+ +  
Sbjct:    4 SRKTRLASEKYAANVTKRGVVS-GRSKDKDGGSRLNPYVLAFIIFVMVGSTVFQIINMMQ 62          
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: A0A8J1ZMH4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1ZMH4_9DINO)

HSP 1 Score: 63.5 bits (153), Expect = 6.080e-12
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 0
Query:    3 SRKTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQIL 58
            +RKT+L SD++A+NI  RG V     ++ ++G+ VGP +LAFFLFVVVGS+I QI+
Sbjct:    4 TRKTKLKSDQFARNIRHRGNVATSDREKSKSGFRVGPLVLAFFLFVVVGSAILQII 59          
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: A0A1Y1IIN1_KLENI (Ribosome associated membrane protein RAMP4 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IIN1_KLENI)

HSP 1 Score: 63.2 bits (152), Expect = 8.420e-12
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 0
Query:    1 MSSRKTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILR 59
            +S+R T++ SDK+ KNI +RG VP  K  +K   Y VGP +L FFLFVVVGS+I QI+R
Sbjct:    3 VSTRHTKVKSDKFQKNILKRGEVP--KTSKKEAKYPVGPIVLGFFLFVVVGSAILQIIR 59          
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: A0A2D4BJU9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJU9_PYTIN)

HSP 1 Score: 62.0 bits (149), Expect = 1.890e-11
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 0
Query:    7 RLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILRVRNI 63
            RL S+K+  NIT+RG V   + D+K +GY+VGP LL FF+FV+VGSS+ QILR   +
Sbjct:    2 RLRSEKHLANITKRGLV--SQPDKKESGYTVGPVLLGFFIFVLVGSSVIQILRTAQL 56          
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: D0MTV7_PHYIT (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=D0MTV7_PHYIT)

HSP 1 Score: 61.2 bits (147), Expect = 4.410e-11
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 0
Query:    5 KTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILRVRNI 63
            K RL S+K+  NIT+RG V + + + K  GYSVGP L+ FFLFV+VGSS+ QILR   +
Sbjct:    6 KMRLRSEKHLANITKRGQVSQPQKEDK--GYSVGPILMGFFLFVLVGSSVIQILRTAQL 62          
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: W7U255_9STRA (Endoplasmic reticulum, stress-associated Ramp4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U255_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.120e-10
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 0
Query:    3 SRKTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILR 59
            SR  RL S+K+ KN+T+RG VP GK  ++     V P LL FF+FVVVGS+ FQI+R
Sbjct:   69 SRAIRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIR 125          
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Match: K3WKY6_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WKY6_GLOUD)

HSP 1 Score: 60.1 bits (144), Expect = 1.260e-10
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 0
Query:    5 KTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVVGSSIFQILR 59
            K RL S+K+  NIT+RG V   K ++  +GY VGP LL FF+FV+VGSS+ QILR
Sbjct:    6 KMRLRSEKHLANITKRGMV--SKPEKNESGYGVGPVLLGFFVFVLVGSSVIQILR 58          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49704.12179.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G487_ECTSI1.660e-2265.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3M6VCY0_9STRA2.670e-1257.63Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A4D9DDX7_9STRA2.940e-1256.14Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835YYR5_9STRA5.770e-1253.33Ribosome associated membrane protein RAMP4-domain-... [more]
A0A8J1ZMH4_9DINO6.080e-1253.57Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A1Y1IIN1_KLENI8.420e-1255.93Ribosome associated membrane protein RAMP4 n=1 Tax... [more]
A0A2D4BJU9_PYTIN1.890e-1154.39Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
D0MTV7_PHYIT4.410e-1154.24Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
W7U255_9STRA1.120e-1054.39Endoplasmic reticulum, stress-associated Ramp4 n=1... [more]
K3WKY6_GLOUD1.260e-1056.36Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010580Stress-associated endoplasmic reticulum proteinPFAMPF06624RAMP4coord: 2..60
e-value: 2.8E-22
score: 78.5
IPR010580Stress-associated endoplasmic reticulum proteinPANTHERPTHR15601STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4coord: 2..61
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..58
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 59..64
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..36
NoneNo IPR availableTMHMMTMhelixcoord: 35..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49704contigH-elongata_contig49704:101..3854 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49704.12179.1mRNA_H-elongata_contig49704.12179.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49704 101..3854 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49704.12179.1 ID=prot_H-elongata_contig49704.12179.1|Name=mRNA_H-elongata_contig49704.12179.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MSSRKTRLASDKYAKNITRRGTVPRGKMDQKRTGYSVGPYLLAFFLFVVV
GSSIFQILRVRNIT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010580ER_stress-assoc