mRNA_H-elongata_contig49631.12164.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49631.12164.1
Unique NamemRNA_H-elongata_contig49631.12164.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49631.12164.1 vs. uniprot
Match: D7G096_ECTSI (Ubiquitin-conjugating enzyme type E2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G096_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 1.440e-63
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 1 
Query:    1 MLSMSPSKRRDTDMMKLMMSDFEVYIPDESSMHDFLVAFPGPVDTPYEGGVWKVHVTLPKEYPFKSPSIGFENRIFHPNVDEMSGSVCLDVINQTWSPMF 300
            MLSMSPSKRRDTDMMKLMMSDFEV+IPDESSMHDFLVAFPGP DTPY+GGVWKVHVTLPKEYPFKSPSIGFENR+FHPNVDEMSGSVCLDVINQTWSPMF
Sbjct:    1 MLSMSPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGVWKVHVTLPKEYPFKSPSIGFENRMFHPNVDEMSGSVCLDVINQTWSPMF 100
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BLAST of mRNA_H-elongata_contig49631.12164.1 vs. uniprot
Match: A0A835Z4W6_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W6_9STRA)

HSP 1 Score: 183 bits (465), Expect = 8.200e-57
Identity = 83/96 (86.46%), Postives = 92/96 (95.83%), Query Frame = 1 
Query:   13 SPSKRRDTDMMKLMMSDFEVYIPDESSMHDFLVAFPGPVDTPYEGGVWKVHVTLPKEYPFKSPSIGFENRIFHPNVDEMSGSVCLDVINQTWSPMF 300
            SP+KRRD DMMKLMMSDF V+IPDE SMHDF+VAFPGP +TPYEGGVWKVHV+LP+EYP++SPSIGFENRI+HPNVDEMSGSVCLDVINQTWSPMF
Sbjct:    3 SPTKRRDMDMMKLMMSDFAVHIPDECSMHDFMVAFPGPANTPYEGGVWKVHVSLPREYPYRSPSIGFENRIYHPNVDEMSGSVCLDVINQTWSPMF 98
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BLAST of mRNA_H-elongata_contig49631.12164.1 vs. uniprot
Match: A0A7S2AI11_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AI11_9STRA)

HSP 1 Score: 172 bits (436), Expect = 8.850e-54
Identity = 79/96 (82.29%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:   13 SPSKRRDTDMMKLMMSDFEVYIPDESSMHDFLVAFPGPVDTPYEGGVWKVHVTLPKEYPFKSPSIGFENRIFHPNVDEMSGSVCLDVINQTWSPMF 300
            +P+KRR  DMMKLMMSD+EV IPDESSMHDF V F GP DTPYEGGVWK+HVTLP  YPFKSPSIGF+NR+FHPNVD++SGSVCLDVINQTWSPMF
Sbjct:    6 TPNKRRHQDMMKLMMSDYEVNIPDESSMHDFFVKFEGPPDTPYEGGVWKIHVTLPPAYPFKSPSIGFKNRMFHPNVDDISGSVCLDVINQTWSPMF 101
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BLAST of mRNA_H-elongata_contig49631.12164.1 vs. uniprot
Match: A0A7S2AI60_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AI60_9STRA)

HSP 1 Score: 172 bits (436), Expect = 1.270e-52
Identity = 79/96 (82.29%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:   13 SPSKRRDTDMMKLMMSDFEVYIPDESSMHDFLVAFPGPVDTPYEGGVWKVHVTLPKEYPFKSPSIGFENRIFHPNVDEMSGSVCLDVINQTWSPMF 300
            +P+KRR  DMMKLMMSD+EV IPDESSMHDF V F GP DTPYEGGVWK+HVTLP  YPFKSPSIGF+NR+FHPNVD++SGSVCLDVINQTWSPMF
Sbjct:    6 TPNKRRHQDMMKLMMSDYEVNIPDESSMHDFFVKFEGPPDTPYEGGVWKIHVTLPPAYPFKSPSIGFKNRMFHPNVDDISGSVCLDVINQTWSPMF 101
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BLAST of mRNA_H-elongata_contig49631.12164.1 vs. uniprot
Match: A0A7S2BA17_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BA17_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.860e-49
Identity = 75/96 (78.12%), Postives = 85/96 (88.54%), Query Frame = 1 
Query:   13 SPSKRRDTDMMKLMMSDFEVYIPDESSMHDFLVAFPGPVDTPYEGGVWKVHVTLPKEYPFKSPSIGFENRIFHPNVDEMSGSVCLDVINQTWSPMF 300
            +P+KRR  DMMKLMMSD+EV IPDES MHDF V F GP +TPYE G WK+HVTLP +YPFKSPSIGF+NR+FHPNVD++SGSVCLDVINQTWSPMF
Sbjct:   65 NPNKRRHQDMMKLMMSDYEVLIPDESCMHDFFVKFDGPAETPYENGSWKIHVTLPADYPFKSPSIGFKNRMFHPNVDDISGSVCLDVINQTWSPMF 160
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BLAST of mRNA_H-elongata_contig49631.12164.1 vs. uniprot
Match: A0A7S3XS74_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS74_HETAK)

HSP 1 Score: 167 bits (422), Expect = 2.140e-49
Identity = 77/99 (77.78%), Postives = 87/99 (87.88%), Query Frame = 1 
Query:    4 LSMSPSKRRDTDMMKLMMSDFEVYIPDESSMHDFLVAFPGPVDTPYEGGVWKVHVTLPKEYPFKSPSIGFENRIFHPNVDEMSGSVCLDVINQTWSPMF 300
            LS SPSKRRD D+++LMMSD+EV +PDE  ++DF VAF GP  TPYEGGVW VHVTLP EYP+KSPSIGF NR+FHPNVD+MSGSVCLDVINQTWSPMF
Sbjct:   80 LSSSPSKRRDNDLVRLMMSDYEVTLPDEDKIYDFHVAFHGPEKTPYEGGVWDVHVTLPPEYPYKSPSIGFSNRLFHPNVDDMSGSVCLDVINQTWSPMF 178
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BLAST of mRNA_H-elongata_contig49631.12164.1 vs. uniprot
Match: A0A8K1C4X5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4X5_PYTOL)

HSP 1 Score: 162 bits (409), Expect = 5.510e-49
Identity = 74/96 (77.08%), Postives = 86/96 (89.58%), Query Frame = 1 
Query:   13 SPSKRRDTDMMKLMMSDFEVYIPDESSMHDFLVAFPGPVDTPYEGGVWKVHVTLPKEYPFKSPSIGFENRIFHPNVDEMSGSVCLDVINQTWSPMF 300
            S +KRR+TD+MKLMMSD+EV + DE+  +DF V F GP +TPYEGGVWK+HV+LPKEYPFKSPSIGF NRI+HPNVD+MSGSVCLDVINQTWSPMF
Sbjct:    3 SMNKRRETDVMKLMMSDYEVQLTDETKTNDFHVKFHGPAETPYEGGVWKIHVSLPKEYPFKSPSIGFVNRIYHPNVDDMSGSVCLDVINQTWSPMF 98
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BLAST of mRNA_H-elongata_contig49631.12164.1 vs. uniprot
Match: A0A7S2W0L0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0L0_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.610e-48
Identity = 73/94 (77.66%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:   19 SKRRDTDMMKLMMSDFEVYIPDESSMHDFLVAFPGPVDTPYEGGVWKVHVTLPKEYPFKSPSIGFENRIFHPNVDEMSGSVCLDVINQTWSPMF 300
            SKR   DMMKLMMSD+EV+IP+E S+H+F V F GP +TPYEGGVWKVHV LP++YPFKSPSIGF+NRI+HPNVD++SGSVCLDVINQTWSPMF
Sbjct:   20 SKRMHRDMMKLMMSDYEVHIPNEQSVHEFFVKFHGPAETPYEGGVWKVHVMLPRDYPFKSPSIGFKNRIYHPNVDDLSGSVCLDVINQTWSPMF 113
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BLAST of mRNA_H-elongata_contig49631.12164.1 vs. uniprot
Match: M2Y2Q8_GALSU (Ubiquitin-conjugating enzyme E2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y2Q8_GALSU)

HSP 1 Score: 161 bits (407), Expect = 2.930e-48
Identity = 74/96 (77.08%), Postives = 85/96 (88.54%), Query Frame = 1 
Query:   13 SPSKRRDTDMMKLMMSDFEVYIPDESSMHDFLVAFPGPVDTPYEGGVWKVHVTLPKEYPFKSPSIGFENRIFHPNVDEMSGSVCLDVINQTWSPMF 300
            SPSKRR+TD+MKLMM+++EV + +   + DF V F GPVDTPYEGGVWKVHVTLP+ YP+KSPSIGF NRI+HPNVDEMSGSVCLDVINQTWSPMF
Sbjct:    3 SPSKRRETDLMKLMMAEYEVELAENDRVGDFFVKFCGPVDTPYEGGVWKVHVTLPEAYPYKSPSIGFVNRIYHPNVDEMSGSVCLDVINQTWSPMF 98
[Close]
BLAST of mRNA_H-elongata_contig49631.12164.1 vs. uniprot
Match: A0A2D4C6N9_PYTIN (Ubiquitin-conjugating enzyme E2, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6N9_PYTIN)

HSP 1 Score: 160 bits (404), Expect = 3.080e-48
Identity = 73/97 (75.26%), Postives = 87/97 (89.69%), Query Frame = 1 
Query:   10 MSPSKRRDTDMMKLMMSDFEVYIPDESSMHDFLVAFPGPVDTPYEGGVWKVHVTLPKEYPFKSPSIGFENRIFHPNVDEMSGSVCLDVINQTWSPMF 300
            MS +KRR+ D+MKLMMS+++V++ DES  +DF V F GP DTPYEGG+WK+HV+LPKEYPFKSPSIGF NRI+HPNVD+MSGSVCLDVINQTWSPMF
Sbjct:    1 MSSNKRREKDVMKLMMSNYDVHLTDESRANDFHVKFHGPKDTPYEGGLWKIHVSLPKEYPFKSPSIGFVNRIYHPNVDDMSGSVCLDVINQTWSPMF 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49631.12164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G096_ECTSI1.440e-6396.00Ubiquitin-conjugating enzyme type E2 n=1 Tax=Ectoc... [more]
A0A835Z4W6_9STRA8.200e-5786.46Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A7S2AI11_9STRA8.850e-5482.29Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2AI60_9STRA1.270e-5282.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2BA17_9STRA1.860e-4978.13Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3XS74_HETAK2.140e-4977.78Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A8K1C4X5_PYTOL5.510e-4977.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2W0L0_9STRA1.610e-4877.66Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
M2Y2Q8_GALSU2.930e-4877.08Ubiquitin-conjugating enzyme E2 n=1 Tax=Galdieria ... [more]
A0A2D4C6N9_PYTIN3.080e-4875.26Ubiquitin-conjugating enzyme E2, putative n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49631contigH-elongata_contig49631:72..1408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.3
Seed ortholog evalue1.3e-50
Seed eggNOG ortholog2880.D7G096
Preferred nameUBC4
KEGG koko:K10576
KEGG Pathwayko04120,map04120
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006109,GO:0006111,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031625,GO:0032446,GO:0036211,GO:0043161,GO:0043170,GO:0043255,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051603,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0062012,GO:0062014,GO:0065007,GO:0070647,GO:0070936,GO:0070979,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsKOG0416@1,KOG0416@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size300
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49631.12164.1prot_H-elongata_contig49631.12164.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49631 72..1408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930817.0875037-CDS-H-elongata_contig49631:71..2381622930817.0875037-CDS-H-elongata_contig49631:71..238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49631 72..238 -
1691679582.8067546-CDS-H-elongata_contig49631:71..2381691679582.8067546-CDS-H-elongata_contig49631:71..238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49631 72..238 -
1622930817.1046498-CDS-H-elongata_contig49631:941..10241622930817.1046498-CDS-H-elongata_contig49631:941..1024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49631 942..1024 -
1691679582.8238292-CDS-H-elongata_contig49631:941..10241691679582.8238292-CDS-H-elongata_contig49631:941..1024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49631 942..1024 -
1622930817.1235435-CDS-H-elongata_contig49631:1358..14081622930817.1235435-CDS-H-elongata_contig49631:1358..1408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49631 1359..1408 -
1691679582.839741-CDS-H-elongata_contig49631:1358..14081691679582.839741-CDS-H-elongata_contig49631:1358..1408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49631 1359..1408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49631.12164.1

>prot_H-elongata_contig49631.12164.1 ID=prot_H-elongata_contig49631.12164.1|Name=mRNA_H-elongata_contig49631.12164.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MLSMSPSKRRDTDMMKLMMSDFEVYIPDESSMHDFLVAFPGPVDTPYEGG
VWKVHVTLPKEYPFKSPSIGFENRIFHPNVDEMSGSVCLDVINQTWSPMF
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mRNA from alignment at H-elongata_contig49631:72..1408-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49631.12164.1 ID=mRNA_H-elongata_contig49631.12164.1|Name=mRNA_H-elongata_contig49631.12164.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1337bp|location=Sequence derived from alignment at H-elongata_contig49631:72..1408- (Himanthalia elongata Himel1 dioecious)
ATGCTGAGCATGTCCCCTTCCAAGCGTAGGGACACGGATATGATGAAGCT
GTGAGTTAACCCTAAAGTGGAACGTATGCATGCTTTCGGGAAGTGCTCTA
CCATGCCTCGAGTTAGGTTTACCCTTTCTTTTCGATGTCGTTGCGGATCG
GCGTACGTCTCAGCCGGGCGCCTGAAGATATCACTTTAGCTCATTTTCCA
CCTCATGTTTGCCCAGTGTCGTGGGCCCTTCCGTCCCTGTCACGATTTCT
TGAAAAAGGTTTTGCACGCTGAAGTGTACGTATTCCGCAATCTTACCCCT
GTTGAACGAACACTCGTGCCCAGAGATTCCCTTTATTTTCCCCCTACAAT
TCCCTGATATGTTTCCGTGTCCGTGCCAAACCAGGATGATGAGCGACTTT
GAGGTATACATCCCGGACGAGTCAAGCATGCATGATTTCCTCGTCGCATT
CCCCGGACCCGTGGACAGTGAGTCAGGCGCCTCTGGCCCAACAAGCTTCA
TTTCGAACCTGCCACTCTATTTTGCCTTCTCTCTTACTGCAGGCCTGCAG
GTACAACGTACGTTGATTTTCTTCAAACTTTCCGCCCCTTTCTTCTATCA
CCAGCAAAATGTTTGTCTTTTTTAATTAAAATTACAGCAGACAGACTCGC
GCATTTTCTAGTCAGCCGTATAGTCCCCGCCCGCATCTCCTACAGACTCA
TCCTACACCGGCGATGCCTCGTGCGGCTTGTTGCTACGCGTCCGCCGTGC
GGTTCATCGTTGTAGCCTCTCAATCATATCCTTACTTCGATGTATTTAAG
TCTCGTGACAAATTCTGCGCGAGCGAAAACGAGCCTTACTCCCTTTTGAA
GTACATATATATATATATATATTTGAGATTTTGGAGCGGGCTCCATTTTT
TGGTTTGTTTCTCCAATGAGTTGGGGGGGGGCTGGTCGTGTGTGGAAATT
ATGCGGGAATTGCTACGTGACTGACTGACACTGACTCTGATAACACGACT
ATTTTTTCCATTTTCCGATGTTATTTGGTTGTGTAAAAATCATCGGAGCT
AGTATTTTTTCTTTTTTTTCCACTCTCATCCTCCTTCCGCGGACCGTGCG
CCATTCCACTTCGCAACTGTGCTGCTACCGCTGTGGTGTAAACACATGGG
AAACGCTAAACCACGCACAGCTCCCTACGAGGGAGGAGTCTGGAAGGTCC
ACGTGACGCTGCCGAAGGAATACCCCTTCAAGTCGCCATCGATCGGCTTC
GAAAATCGTATATTTCACCCTAATGTTGACGAGATGTCTGGGTCCGTTTG
CCTGGACGTCATCAACCAGACGTGGAGCCCGATGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig49631:72..1408-

>mRNA_H-elongata_contig49631.12164.1 ID=mRNA_H-elongata_contig49631.12164.1|Name=mRNA_H-elongata_contig49631.12164.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig49631:72..1408- (Himanthalia elongata Himel1 dioecious)
ATGCTGAGCATGTCCCCTTCCAAGCGTAGGGACACGGATATGATGAAGCT
ATGCTGAGCATGTCCCCTTCCAAGCGTAGGGACACGGATATGATGAAGCT
GATGATGAGCGACTTTGAGGTATACATCCCGGACGAGTCAAGCATGCATG
ATTTCCTCGTCGCATTCCCCGGACCCGTGGACAGATGATGAGCGACTTTG
AGGTATACATCCCGGACGAGTCAAGCATGCATGATTTCCTCGTCGCATTC
CCCGGACCCGTGGACACTCCCTACGAGGGAGGAGTCTGGAAGGTCCACGT
GACGCTGCCGAAGGAATACCCCTTCAAGTCGCCATCGATCGGCTTCGAAA
ATCGTATATTTCACCCTAATGTTGACGAGATGTCTGGGTCCGTTTGCCTG
GACGTCATCAACCAGACGTGGAGCCCGATGTTCCTCCCTACGAGGGAGGA
GTCTGGAAGGTCCACGTGACGCTGCCGAAGGAATACCCCTTCAAGTCGCC
ATCGATCGGCTTCGAAAATCGTATATTTCACCCTAATGTTGACGAGATGT
CTGGGTCCGTTTGCCTGGACGTCATCAACCAGACGTGGAGCCCGATGTTC
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