mRNA_H-elongata_contig49606.12161.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49606.12161.1
Unique NamemRNA_H-elongata_contig49606.12161.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49606.12161.1 vs. uniprot
Match: D7G359_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G359_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.970e-7
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 LVLLLDEPLEKLPIEACSGLNGMQAVARDFSLNILRHR 114
            LVLL+DE LEKLP+EAC+ + G+ +V+RDFSL++L HR
Sbjct: 2953 LVLLMDEKLEKLPVEACAAVGGISSVSRDFSLHMLCHR 2990
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49606.12161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G359_ECTSI1.970e-763.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49606contigH-elongata_contig49606:2066..2182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930816.9385257-CDS-H-elongata_contig49606:2065..21821622930816.9385257-CDS-H-elongata_contig49606:2065..2182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49606 2066..2182 -
1691679582.7644193-CDS-H-elongata_contig49606:2065..21821691679582.7644193-CDS-H-elongata_contig49606:2065..2182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49606 2066..2182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49606.12161.1prot_H-elongata_contig49606.12161.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49606 2066..2182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49606.12161.1

>prot_H-elongata_contig49606.12161.1 ID=prot_H-elongata_contig49606.12161.1|Name=mRNA_H-elongata_contig49606.12161.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
LVLLLDEPLEKLPIEACSGLNGMQAVARDFSLNILRHR*
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mRNA from alignment at H-elongata_contig49606:2066..2182-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49606.12161.1 ID=mRNA_H-elongata_contig49606.12161.1|Name=mRNA_H-elongata_contig49606.12161.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=117bp|location=Sequence derived from alignment at H-elongata_contig49606:2066..2182- (Himanthalia elongata Himel1 dioecious)
TTAGTCCTTTTGTTGGATGAGCCGCTAGAGAAACTACCAATCGAAGCATG
CTCGGGCCTGAACGGAATGCAGGCTGTAGCTCGCGACTTCAGCCTGAACA
TACTTCGGCACCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig49606:2066..2182-

>mRNA_H-elongata_contig49606.12161.1 ID=mRNA_H-elongata_contig49606.12161.1|Name=mRNA_H-elongata_contig49606.12161.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig49606:2066..2182- (Himanthalia elongata Himel1 dioecious)
TTAGTCCTTTTGTTGGATGAGCCGCTAGAGAAACTACCAATCGAAGCATG
CTCGGGCCTGAACGGAATGCAGGCTGTAGCTCGCGACTTCAGCCTGAACA
TACTTCGGCACCGGTGATTAGTCCTTTTGTTGGATGAGCCGCTAGAGAAA
CTACCAATCGAAGCATGCTCGGGCCTGAACGGAATGCAGGCTGTAGCTCG
CGACTTCAGCCTGAACATACTTCGGCACCGGTGA
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