mRNA_H-elongata_contig49590.12158.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49590.12158.1
Unique NamemRNA_H-elongata_contig49590.12158.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49590.12158.1 vs. uniprot
Match: D8LFP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP2_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 4.740e-27
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:    1 QVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQTVFFGSLGDQSANIISYL 183
            QVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQ VFFG LGD S+N+ISYL
Sbjct:  941 QVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQVVFFGPLGDNSSNLISYL 1001
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BLAST of mRNA_H-elongata_contig49590.12158.1 vs. uniprot
Match: A0A6H5K7U8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U8_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.050e-25
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 QVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQTVFFGSLGDQSANIISYL 183
            QVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQ VFFG LG+ S N+I YL
Sbjct:  245 QVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQVVFFGPLGENSTNLICYL 305
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BLAST of mRNA_H-elongata_contig49590.12158.1 vs. uniprot
Match: D8LFN4_ECTSI (Pleiotropic drug resistance transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN4_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.070e-25
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 QVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQTVFFGSLGDQSANIISYL 183
            QVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQ VFFG LG+ S N+I YL
Sbjct: 1029 QVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQVVFFGPLGENSTNLICYL 1089
[Close]
BLAST of mRNA_H-elongata_contig49590.12158.1 vs. uniprot
Match: D7FQN0_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN0_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 6.300e-25
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    1 QVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQTVFFGSLGDQSANIISYL 183
            QVVMRAIRKVAAT RAVICTIHQPSTYLFEMFD+LLLLKKGGQTVFFG LG +S+ +ISYL
Sbjct:  178 QVVMRAIRKVAATGRAVICTIHQPSTYLFEMFDSLLLLKKGGQTVFFGELGAESSKLISYL 238
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BLAST of mRNA_H-elongata_contig49590.12158.1 vs. uniprot
Match: A0A835ZIR5_9STRA (ABC-2 type transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIR5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.460e-20
Identity = 45/61 (73.77%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 QVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQTVFFGSLGDQSANIISYL 183
            QVV+RAIRKVA+T RAVICTIHQPSTYLFEMFD+LLLLKKGG+ V+FG LG  S+ +I+++
Sbjct:  886 QVVLRAIRKVASTGRAVICTIHQPSTYLFEMFDSLLLLKKGGEVVYFGELGVHSSALIAHI 946
[Close]
BLAST of mRNA_H-elongata_contig49590.12158.1 vs. uniprot
Match: A0A835Z0F1_9STRA (ABC-2 type transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0F1_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.460e-20
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 QVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQTVFFGSLGDQSANIISYL 183
            QVV+RAIRKVA T R ++CTIHQPSTYLFEMFD +LLLKKGG+TV+FG LG  S+ +IS+L
Sbjct:  960 QVVVRAIRKVATTGRTIVCTIHQPSTYLFEMFDLMLLLKKGGETVYFGELGTHSSALISHL 1020
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BLAST of mRNA_H-elongata_contig49590.12158.1 vs. uniprot
Match: A0A485KDB1_9STRA (Aste57867_4588 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDB1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.840e-18
Identity = 40/60 (66.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 QVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQTVFFGSLGDQSANIISY 180
            ++VM  IRK+A+T R V+CTIHQPS  +FEMFD+LLLLK+GGQTVFFG LG ++AN+I Y
Sbjct:   32 KIVMSGIRKIASTGRTVVCTIHQPSAEVFEMFDSLLLLKRGGQTVFFGDLGVRAANLIDY 91
[Close]
BLAST of mRNA_H-elongata_contig49590.12158.1 vs. uniprot
Match: A0A485KFN2_9STRA (Aste57867_4589 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KFN2_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.140e-18
Identity = 40/60 (66.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 QVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQTVFFGSLGDQSANIISY 180
            ++VM  IRK+A+T R V+CTIHQPS  +FEMFD+LLLLK+GGQTVFFG LG ++AN+I Y
Sbjct:  923 KIVMSGIRKIASTGRTVVCTIHQPSAEVFEMFDSLLLLKRGGQTVFFGDLGVRAANLIDY 982
[Close]
BLAST of mRNA_H-elongata_contig49590.12158.1 vs. uniprot
Match: A0A1V9ZBF3_9STRA (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZBF3_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.920e-18
Identity = 38/60 (63.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 QVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQTVFFGSLGDQSANIISY 180
            +++M  IRK+A+T R V+CTIHQPST +FEMFD+LLLLK+GG+TVFFG LG Q++++I Y
Sbjct:  920 KIIMTGIRKIASTGRTVVCTIHQPSTEVFEMFDSLLLLKRGGETVFFGDLGHQASHLIEY 979
[Close]
BLAST of mRNA_H-elongata_contig49590.12158.1 vs. uniprot
Match: A0A067CIH3_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CIH3_SAPPC)

HSP 1 Score: 86.3 bits (212), Expect = 2.920e-18
Identity = 39/60 (65.00%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 QVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQTVFFGSLGDQSANIISY 180
            +++M  IRK+A+T R V+CTIHQPST +FEMFD+LLLLK+GG+TVFFG LG  + N+ISY
Sbjct:  925 KIIMTGIRKIASTGRTVVCTIHQPSTEVFEMFDSLLLLKRGGETVFFGDLGANAINMISY 984
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49590.12158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFP2_ECTSI4.740e-2791.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7U8_9PHAE1.050e-2588.52ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LFN4_ECTSI1.070e-2588.52Pleiotropic drug resistance transporter n=1 Tax=Ec... [more]
D7FQN0_ECTSI6.300e-2586.89ABC transporter domain-containing protein n=1 Tax=... [more]
A0A835ZIR5_9STRA1.460e-2073.77ABC-2 type transporter-domain-containing protein n... [more]
A0A835Z0F1_9STRA1.460e-2072.13ABC-2 type transporter-domain-containing protein n... [more]
A0A485KDB1_9STRA1.840e-1866.67Aste57867_4588 protein n=1 Tax=Aphanomyces stellat... [more]
A0A485KFN2_9STRA2.140e-1866.67Aste57867_4589 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1V9ZBF3_9STRA2.920e-1863.33ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ach... [more]
A0A067CIH3_SAPPC2.920e-1865.00Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49590contigH-elongata_contig49590:2186..2368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue7.5e-22
Seed eggNOG ortholog2880.D8LFP2
EggNOG free text desc.ATPase activity
EggNOG OGsCOG1131@1,KOG0065@2759
Ec32 ortholog descriptionpleiotropic drug resistance transporter
Ec32 orthologEc-04_001470.2
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size183
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930816.6712427-CDS-H-elongata_contig49590:2185..23591622930816.6712427-CDS-H-elongata_contig49590:2185..2359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49590 2186..2359 -
1691679582.6394782-CDS-H-elongata_contig49590:2185..23591691679582.6394782-CDS-H-elongata_contig49590:2185..2359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49590 2186..2359 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930816.6873748-UTR-H-elongata_contig49590:2359..23681622930816.6873748-UTR-H-elongata_contig49590:2359..2368Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49590 2360..2368 -
1691679582.6486678-UTR-H-elongata_contig49590:2359..23681691679582.6486678-UTR-H-elongata_contig49590:2359..2368Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49590 2360..2368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49590.12158.1prot_H-elongata_contig49590.12158.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49590 2186..2359 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49590.12158.1

>prot_H-elongata_contig49590.12158.1 ID=prot_H-elongata_contig49590.12158.1|Name=mRNA_H-elongata_contig49590.12158.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQTVFFGSLGDQ
SANIISYL
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mRNA from alignment at H-elongata_contig49590:2186..2368-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49590.12158.1 ID=mRNA_H-elongata_contig49590.12158.1|Name=mRNA_H-elongata_contig49590.12158.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig49590:2186..2368- (Himanthalia elongata Himel1 dioecious)
CAGGTGGTGATGCGAGCCATCCGCAAGGTAGCGGCGACGCAACGCGCGGT
GATCTGCACTATCCACCAGCCATCCACGTACCTGTTTGAGATGTTCGACG
CGTTGCTTCTTCTCAAAAAGGGCGGACAGACCGTGTTCTTCGGCTCCCTG
GGGGACCAGAGCGCCAATATAATATCTTATCTC
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Coding sequence (CDS) from alignment at H-elongata_contig49590:2186..2368-

>mRNA_H-elongata_contig49590.12158.1 ID=mRNA_H-elongata_contig49590.12158.1|Name=mRNA_H-elongata_contig49590.12158.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig49590:2186..2368- (Himanthalia elongata Himel1 dioecious)
ATGCGAGCCATCCGCAAGGTAGCGGCGACGCAACGCGCGGTGATCTGCAC
TATCCACCAGCCATCCACGTACCTGTTTGAGATGTTCGACGCGTTGCTTC
TTCTCAAAAAGGGCGGACAGACCGTGTTCTTCGGCTCCCTGGGGGACCAG
AGCGCCAATATAATATCTTATCTCATGCGAGCCATCCGCAAGGTAGCGGC
GACGCAACGCGCGGTGATCTGCACTATCCACCAGCCATCCACGTACCTGT
TTGAGATGTTCGACGCGTTGCTTCTTCTCAAAAAGGGCGGACAGACCGTG
TTCTTCGGCTCCCTGGGGGACCAGAGCGCCAATATAATATCTTATCTC
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